Research Output

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2020

Guide to transcranial imaging of sound-evoked activity in the auditory cortex of GCAMP6s mice in vivo

Yudintsev, G., Lee, C. M., Asilador, A. R. & Llano, D. A., Jan 1 2020, Neuromethods. Humana Press Inc., p. 45-68 24 p. (Neuromethods; vol. 152).

Research output: Chapter in Book/Report/Conference proceedingChapter

Injection of adeno-associated virus containing optogenetic and chemogenetic probes into the neonatal mouse brain

Huynh, N. C., Ibrahim, B. A., Lee, C. M., Key, M. N. & Llano, D. A., Jan 1 2020, Neuromethods. Humana Press Inc., p. 19-43 25 p. (Neuromethods; vol. 152).

Research output: Chapter in Book/Report/Conference proceedingChapter

2019

Neuropeptidomics of the mammalian brain

Xie, F., Anapindi, K. D. B., Romanova, E. V. & Sweedler, J. V., Jan 1 2019, Neuromethods. Humana Press Inc., p. 161-177 17 p. (Neuromethods; vol. 146).

Research output: Chapter in Book/Report/Conference proceedingChapter

The physiology and biochemistry of low temperature adaptations in polar marine ectotherms

Devries, A. L., Jan 1 2019, Polar Research: To the Present, and the Future. Taylor and Francis, p. 175-202 28 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Open Access
2018

Bioinformatics for prohormone and neuropeptide discovery

Southey, B. R., Romanova, E. V., Rodriguez-Zas, S. L. & Sweedler, J. V., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 71-96 26 p. (Methods in Molecular Biology; vol. 1719).

Research output: Chapter in Book/Report/Conference proceedingChapter

Gonadotropin receptors

Eckstrum, K. S. & Raetzman, L. T., Jan 1 2018, Encyclopedia of Reproduction. Elsevier, p. 137-141 5 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Non-targeted identification of d-amino acid-containing peptides through enzymatic screening, chiral amino acid analysis, and LC-MS

Tai, H. C., Checco, J. W. & Sweedler, J. V., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 107-118 12 p. (Methods in Molecular Biology; vol. 1719).

Research output: Chapter in Book/Report/Conference proceedingChapter

Progesterone signaling in the endometrium

Dávila, J., Bagchi, I. C. & Bagchi, M. K., Jan 1 2018, Encyclopedia of Reproduction. Elsevier, p. 184-189 6 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Uterus: Growth factors and cytokines

Bhurke, A., Bagchi, M. K. & Bagchi, I. C., Jan 1 2018, Encyclopedia of Reproduction. Elsevier, p. 333-338 6 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2017

Integrated cantilever-based biosensors for the detection of chemical and biological entities

Corbin, E. A., YekrangSafakar, A., Adeniba, O., Gupta, A., Park, K. & Bashir, R., Jan 1 2017, Nanotechnology in Biology and Medicine: Methods, Devices, and Applications, Second Edition. CRC Press, p. 469-529 61 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2016

Detection of endogenous selective estrogen receptor modulators such as 27-hydroxycholesterol

Nelson, E. R., Jan 1 2016, Methods in Molecular Biology. Humana Press Inc., p. 431-443 13 p. (Methods in Molecular Biology; vol. 1366).

Research output: Chapter in Book/Report/Conference proceedingChapter

Free D-aspartate in nonmammalian animals: Detection, localization, metabolism, and function

Patel, A. V., Kawai, T., Rubakhin, S. & Sweedler, J. V., Jan 1 2016, D-Amino Acids: Physiology, Metabolism, and Application. Springer Japan, p. 173-197 25 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Mass spectrometry of proteins

Romanova, E. V., Annangudi, S. P., Tai, H. C. & Sweedler, J. V., Jan 1 2016, The Curated Reference Collection in Neuroscience and Biobehavioral Psychology. Elsevier Science Ltd., p. 681-687 7 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2015

Biophotonics for assessing breast cancer

Erickson-Bhatt, S. J. & Boppart, S. A., Jun 25 2015, Biophotonics for Medical Applications. Elsevier Inc., p. 175-214 40 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Data analysis and signal postprocessing for optical coherence tomography

Ralston, T. S., Marks, D. L., Ahmad, A. & Boppart, S. A., Jan 1 2015, Optical Coherence Tomography: Technology and Applications, Second Edition. Springer International Publishing, p. 407-436 30 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Development of microfluidic devices for the manipulation of neuronal synapses

Jain, A. & Gillette, M. U., Mar 10 2015, Microfluidic and Compartmentalized Platforms for Neurobiological Research. Springer New York, Vol. 103. p. 127-137 11 p. (Neuromethods).

Research output: Chapter in Book/Report/Conference proceedingChapter

DSP technology and methods for OCT

Ali, M., Ahmad, A. & Boppart, S. A., Jan 1 2015, Optical Coherence Tomography: Technology and Applications, Second Edition. Springer International Publishing, p. 437-458 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Impedance microbiology and microbial screening strategy for detecting pathogens in food

Flint, S., Naila, A. & Bashir, R., Jan 1 2015, High Throughput Screening for Food Safety Assessment: Biosensor Technologies, Hyperspectral Imaging and Practical Applications. Elsevier Inc., p. 285-300 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Interferometric synthetic aperture microscopy (ISAM)

Adie, S. G., Shemonski, N. D., Ralston, T. S., Carney, P. S. & Boppart, S. A., Jan 1 2015, Optical Coherence Tomography: Technology and Applications, Second Edition. Springer International Publishing, p. 965-1004 40 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Intraoperative OCT in surgical oncology

South, F. A., Marjanovic, M. & Boppart, S. A., Jan 1 2015, Optical Coherence Tomography: Technology and Applications, Second Edition. Springer International Publishing, p. 2393-2412 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Molecular optical coherence tomography contrast enhancement and imaging

Oldenburg, A. L., Applegate, B. E., Tucker-Schwartz, J. M., Skala, M. C., Kim, J. & Boppart, S. A., Jan 1 2015, Optical Coherence Tomography: Technology and Applications, Second Edition. Springer International Publishing, p. 1429-1454 26 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Nonlinear interferometric vibrational imaging (NIVI) with novel optical sources

Boppart, S. A., King, M. D., Liu, Y., Tu, H. & Gruebele, M., Jan 1 2015, Optical Coherence Tomography: Technology and Applications, Second Edition. Springer International Publishing, p. 1237-1256 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Optical coherence elastography

Kennedy, B. F., Kennedy, K. M., Oldenburg, A. L., Adie, S. G., Boppart, S. A. & Sampson, D. D., Jan 1 2015, Optical Coherence Tomography: Technology and Applications, Second Edition. Springer International Publishing, p. 1007-1054 48 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Optical coherence tomography in tissue engineering

Zhao, Y., Yang, Y., Wang, R. K. & Boppart, S. A., Jan 1 2015, Optical Coherence Tomography: Technology and Applications, Second Edition. Springer International Publishing, p. 1965-2001 37 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Pharmacotherapy for Aphasia

Llano, D. A. & Small, S. L., Jan 1 2015, Neurobiology of Language. Elsevier Inc., p. 1067-1083 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Stereolithographic 3D bioprinting for biomedical applications

Raman, R. & Bashir, R., Aug 7 2015, Essentials of 3D Biofabrication and Translation. Elsevier Inc., p. 89-121 33 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

The Thalamus and Language

Llano, D. A., Jan 1 2015, Neurobiology of Language. Elsevier Inc., p. 95-114 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2014

Nonlinear interferometric vibrational imaging and spectroscopy

Tu, H., Jiang, Z., Chowdary, P. D., Benalcazar, W., Chaney, E. J., Marks, D. L., Gruebele, M. & Boppart, S. A., Jan 1 2014, Biomedical Photonics Handbook, Second Edition: Therapeutics and Advanced Biophotonics. CRC Press, p. 273-293 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Synaptogenesis and development of pyramidal neuron dendritic morphology in the chimpanzee neocortex resembles humans

Bianchi, S., Stimpson, C. D., Duka, T., Larsen, M. D., Janssen, W. G. M., Collins, Z., Bauernfeind, A. L., Schapiro, S. J., Baze, W. B., Mcarthur, M. J., Hopkins, W. D., Wildman, D. E., Lipovich, L., Kuzawa, C. W., Jacobs, B., Hof, P. R. & Sherwood, C. C., Jun 19 2014, The Human Mental Machinery. National Academies Press, Vol. 7. p. 135-152 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Ultrasound and optical methods for dynamic viscoelastic imaging

Wang, Y., Adie, S. G., Boppart, S. A. & Insana, M. F., Jan 1 2014, Handbook of Imaging in Biological Mechanics. CRC Press, p. 83-96 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2013

Imaging and tracking of bone marrow-derived immune and stem cells

Zhao, Y., Bower, A. J., Graf, B. W., Boppart, M. D. & Boppart, S. A., Sep 4 2013, Imaging and Tracking Stem Cells: Methods and Protocols. p. 57-76 20 p. (Methods in Molecular Biology; vol. 1052).

Research output: Chapter in Book/Report/Conference proceedingChapter

New Mass Spectrometric Approaches for Uncovering Neuropeptides

Hou, X. & Sweedler, J. V., Aug 29 2013, Handbook of Biologically Active Peptides. Elsevier Inc., p. 1749-1756 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Placental development, evolution, and epigenetics of primate pregnancies

Sterner, K. N., Jameson, N. M. & Wildman, D. E., Jan 1 2013, Building Babies: Primate Development in Proximate and Ultimate Perspective. Springer New York, p. 55-81 27 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Reproduction and placentation in neotropical carnivores

McGowen, M. R., Agnew, D. & Wildman, D., Mar 1 2013, Molecular Population Genetics, Evolutionary Biology and Biological Conservation of Neotropical Carnivores. Nova Science Publishers, Inc., p. 485-508 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Sirtuin 1 Deacetylase. A Key Regulator of Hepatic Lipid Metabolism.

Kemper, J. K., Choi, S. E. & Kim, D. H., 2013, Vitamins and Hormones. Academic Press Inc., p. 385-404 20 p. (Vitamins and Hormones; vol. 91).

Research output: Chapter in Book/Report/Conference proceedingChapter

2012

An introduction to in vitro slice approaches for the study of neuronal circuitry

Varela, C., Llano, D. A. & Theyel, B. B., Apr 19 2012, Neuronal Network Analysis: Concepts and Experimental Approaches. p. 103-125 23 p. (Neuromethods; vol. 67).

Research output: Chapter in Book/Report/Conference proceedingChapter

Evolution of the couple cytochrome c and cytochrome c oxidase in primates

Pierron, D., Wildman, D. E., Hüttemann, M., Letellier, T. & Grossman, L. I., Jul 17 2012, Mitochondrial Oxidative Phosphorylation: Nuclear-Encoded Genes, Enzyme Regulation, and Pathophysiology. Kadenbach, B. (ed.). p. 185-213 29 p. (Advances in Experimental Medicine and Biology; vol. 748).

Research output: Chapter in Book/Report/Conference proceedingChapter

Interferometric synthetic aperture microscopy

Carney, P. S., Adie, S. & Boppart, S. A., Jan 1 2012, Emerging Imaging Technologies in Medicine. CRC Press, p. 293-301 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2011

Neuropeptidomics: Mass spectrometry-based qualitative and quantitative analysis

Yin, P., Hou, X., Romanova, E. V. & Sweedler, J. V., Oct 24 2011, Neuropeptides: Methods and Protocols. Merighi, A. (ed.). p. 223-236 14 p. (Methods in Molecular Biology; vol. 789).

Research output: Chapter in Book/Report/Conference proceedingChapter

Neuropeptidomics

Sweedler, J. V., Xie, F. & Bora, A., Sep 23 2011, Protein and Peptide Mass Spectrometry in Drug Discovery. John Wiley and Sons, p. 393-433 41 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Neuropeptidomics of the mammalian brain

Xie, F., Romanova, E. V. & Sweedler, J. V., Jun 3 2011, Neuroproteomics. Li, K. W. (ed.). p. 229-242 14 p. (Neuromethods; vol. 57).

Research output: Chapter in Book/Report/Conference proceedingChapter

2010

A mass spectrometry primer for mass spectrometry imaging

Rubakhin, S. S. & Sweedler, J. V., Dec 1 2010, Mass Spectrometry Imaging: Principles and Protocols. Rubakhin, S. & Sweedler, J. (eds.). p. 21-49 29 p. (Methods in Molecular Biology; vol. 656).

Research output: Chapter in Book/Report/Conference proceedingChapter

Biology: Using a ubiquitous knowledge environment to integrate teaching, learning, and research in biology and chemistry

Jakobsson, E., Dec 1 2010, Ubiquitous Learning. University of Illinois Press, p. 216-229 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Mass spectrometry–based methodologies for single-cell metabolite detection and identification

Knolhoff, A. M., Nemes, P., Rubakhin, S. & Sweedler, J. V., Jan 1 2010, Methodologies for Metabolomics: Experimental Strategies and Techniques. Cambridge University Press, p. 119-139 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Mass spectrometry imaging using the stretched sample approach

Zimmerman, T. A., Rubakhin, S. S. & Sweedler, J. V., Dec 1 2010, Mass Spectrometry Imaging: Principles and Protocols. Rubakhin, S. & Sweedler, J. (eds.). p. 465-479 15 p. (Methods in Molecular Biology; vol. 656).

Research output: Chapter in Book/Report/Conference proceedingChapter

Optical coherence tomography for cancer detection

Adie, S. G. & Boppart, S. A., Dec 1 2010, Optical Imaging of Cancer: Clinical Applications. Springer New York, p. 209-250 42 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Single-Cell Mass Spectrometry

Knolhoff, A. M., Rubakhin, S. & Sweedler, J. V., Mar 19 2010, Chemical Cytometry: Ultrasensitive Analysis of Single Cells. Wiley-VCH, p. 197-218 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2009

Behavioral hierarchies

Gillette, R., Jan 1 2009, Encyclopedia of Neuroscience. Elsevier Ltd, p. 145-154 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Circadian Gene Expression in the Suprachiasmatic Nucleus

Gillette, M. U. & Tyan, S. H., Jan 1 2009, Encyclopedia of Neuroscience. Elsevier Ltd, p. 901-908 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Digital health and bio-medical packaging

Mercado, L., Carney, J. K., Ebert, M. J., Hareland, S. A. & Bashir, R., Dec 1 2009, Materials for Advanced Packaging. Springer US, p. 681-712 32 p.

Research output: Chapter in Book/Report/Conference proceedingChapter