Research Output

2017

Quantitative Pneumatic Otoscopy Using a Light-Based Ranging Technique

Shelton, R. L., Nolan, R. M., Monroy, G. L., Pande, P., Novak, M. A., Porter, R. G. & Boppart, S. A., Aug 1 2017, In : JARO - Journal of the Association for Research in Otolaryngology. 18, 4, p. 555-568 14 p.

Research output: Contribution to journalArticle

Ratiometric analysis of optical coherence tomography–measured in vivo retinal layer thicknesses for the detection of early diabetic retinopathy

Bhaduri, B., Shelton, R. L., Nolan, R. M., Hendren, L., Almasov, A., Labriola, L. T. & Boppart, S. A., Nov 2017, In : Journal of Biophotonics. 10, 11, p. 1430-1441 12 p.

Research output: Contribution to journalArticle

Regulation of Thalamic and Cortical Network Synchrony by Scn8a

Makinson, C. D., Tanaka, B. S., Sorokin, J. M., Wong, J. C., Christian, C. A., Goldin, A. L., Escayg, A. & Huguenard, J. R., Mar 8 2017, In : Neuron. 93, 5, p. 1165-1179.e6

Research output: Contribution to journalArticle

RemBrain: Exploring dynamic biospatial networks with mosaicmatrices and mirror glyphs

Ma, C., Pellolio, F., Llano, D. A., Stebbings, K. A., Kenyon, R. V. & Marai, G. E., Nov 1 2017, In : IS and T International Symposium on Electronic Imaging Science and Technology.

Research output: Contribution to journalConference article

RET-mediated glial cell line-derived neurotrophic factor signaling inhibits mouse prostate development

Park, H. J. & Bolton, E. C., 2017, In : Development (Cambridge). 144, 12, p. 2282-2293 12 p.

Research output: Contribution to journalArticle

Review of optical coherence tomography in oncology

Wang, J., Xu, Y. & Boppart, S. A., Dec 2017, In : Journal of biomedical optics. 22, 12, 121711.

Research output: Contribution to journalReview article

Science Communication: A Science Not an Art

Sweedler, J. V., Mar 7 2017, In : Analytical chemistry. 89, 5, 1 p.

Research output: Contribution to journalEditorial

Selective in vivo metabolic cell-labeling-mediated cancer targeting

Wang, H., Wang, R., Cai, K., He, H., Liu, Y., Yen, J., Wang, Z., Xu, M., Sun, Y., Zhou, X., Yin, Q., Tang, L., Dobrucki, I. T., Dobrucki, L. W., Chaney, E. J., Boppart, S. A., Fan, T. M., Lezmi, S., Chen, X., Yin, L. & 1 others, Cheng, J., Apr 1 2017, In : Nature chemical biology. 13, 4, p. 415-424 10 p.

Research output: Contribution to journalArticle

Single Cell Profiling Using Ionic Liquid Matrix-Enhanced Secondary Ion Mass Spectrometry for Neuronal Cell Type Differentiation

Do, T. D., Comi, T. J., Dunham, S. J. B., Rubakhin, S. S. & Sweedler, J. V., Mar 7 2017, In : Analytical chemistry. 89, 5, p. 3078-3086 9 p.

Research output: Contribution to journalArticle

Small heterodimer partner deletion prevents hepatic steatosis and when combined with farnesoid X receptor loss protects against type 2 diabetes in mice

Akinrotimi, O., Riessen, R., VanDuyne, P., Park, J. E., Lee, Y. K., Wong, L. J., Zavacki, A. M., Schoonjans, K. & Anakk, S., Dec 2017, In : Hepatology. 66, 6, p. 1854-1865 12 p.

Research output: Contribution to journalArticle

Stain-free structural and molecular histopathology using programmable supercontinuum pulses

Boppart, S. A., Jan 1 2017, Novel Techniques in Microscopy, NTM 2017. OSA - The Optical Society, (Optics InfoBase Conference Papers; vol. Part F79-NTM 2017).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Structurally novel antiestrogens elicit differential responses from constitutively active mutant estrogen receptors in breast cancer cells and tumors

Zhao, Y., Laws, M. J., Guillen, V. S., Ziegler, Y., Min, J., Sharma, A., Kim, S. H., Chu, D., Park, B. H., Oesterreich, S., Mao, C., Shapiro, D. J., Nettles, K. W., Katzenellenbogen, J. A. & Katzenellenbogen, B. S., Oct 15 2017, In : Cancer Research. 77, 20, p. 5602-5613 12 p.

Research output: Contribution to journalArticle

The Analytical Chemistry Award Winners

Sweedler, J. V., Oct 3 2017, In : Analytical chemistry. 89, 19, 1 p.

Research output: Contribution to journalEditorial

The Analytical Chemistry Virtual Issue Featuring Our Advisory Boards

Sweedler, J. V., Jul 5 2017, In : Analytical chemistry. 89, 13, 1 p.

Research output: Contribution to journalEditorial

The Chemistry of Thought: The Role of the Measurement Sciences in Brain Research

Andrews, A. M., Bhargava, R., Kennedy, R., Li, L. & Sweedler, J. V., May 2 2017, In : Analytical chemistry. 89, 9, 1 p.

Research output: Contribution to journalEditorial

The cholesterol metabolite 27 hydroxycholesterol facilitates breast cancer metastasis through its actions on immune cells

Baek, A. E., Yu, Y. R. A., He, S., Wardell, S. E., Chang, C. Y., Kwon, S., Pillai, R. V., McDowell, H. B., Thompson, J. W., Dubois, L. G., Sullivan, P. M., Kemper, J. K., Gunn, M. D., McDonnell, D. P. & Nelson, E. R., Dec 1 2017, In : Nature communications. 8, 1, 864.

Research output: Contribution to journalArticle

The core transcriptome of mammalian placentas and the divergence of expression with placental shape

Armstrong, D. L., McGowen, M. R., Weckle, A., Pantham, P., Caravas, J., Agnew, D., Benirschke, K., Savage-Rumbaugh, S., Nevo, E., Kim, C. J., Wagner, G. P., Romero, R. & Wildman, D. E., Sep 2017, In : Placenta. 57, p. 71-78 8 p.

Research output: Contribution to journalArticle

Three-Dimensional Encapsulation of Saccharomyces cerevisiae in Silicate Matrices Creates Distinct Metabolic States as Revealed by Gene Chip Analysis

Fazal, Z., Pelowitz, J., Johnson, P. E., Harper, J. C., Brinker, C. J. & Jakobsson, E., Apr 25 2017, In : ACS Nano. 11, 4, p. 3560-3575 16 p.

Research output: Contribution to journalArticle

Three-dimensional mesostructures as high-temperature growth templates, electronic cellular scaffolds, and self-propelled microrobots

Yan, Z., Han, M., Shi, Y., Badea, A., Yang, Y., Kulkarni, A., Hanson, E., Kandel, M. E., Wen, X., Zhang, F., Luo, Y., Lin, Q., Zhang, H., Guo, X., Huang, Y., Nan, K., Jia, S., Oraham, A. W., Mevis, M. B., Lim, J. & 19 others, Guo, X., Gao, M., Ryu, W., Yu, K. J., Nicolau, B. G., Petronico, A., Rubakhin, S. S., Lou, J., Ajayan, P. M., Thornton, K., Popescu, G., Fang, D., Sweedler, J. V., Braun, P. V., Zhang, H., Nuzzo, R. G., Huang, Y., Zhang, Y. & Rogers, J. A., Nov 7 2017, In : Proceedings of the National Academy of Sciences of the United States of America. 114, 45, p. E9455-E9464

Research output: Contribution to journalArticle

Towards a Unified Understanding of Lithium Action in Basic Biology and its Significance for Applied Biology

Jakobsson, E., Argüello-Miranda, O., Chiu, S. W., Fazal, Z., Kruczek, J., Nunez-Corrales, S., Pandit, S. & Pritchet, L., Dec 1 2017, In : Journal of Membrane Biology. 250, 6, p. 587-604 18 p.

Research output: Contribution to journalReview article

Open Access

Use the Supporting Information, but Do Not Leave Critical Details out of the Main Manuscript

Sweedler, J. V., Nov 7 2017, In : Analytical chemistry. 89, 21, 1 p.

Research output: Contribution to journalEditorial

Wavefront measurement using computational adaptive optics OCT

South, F. A., Liu, Y. Z., Xu, Y., Bower, A. J., Carney, P. S. & Boppart, S. A., Jan 1 2017, Computational Optical Sensing and Imaging, COSI 2017. OSA - The Optical Society, (Optics InfoBase Conference Papers; vol. Part F46-COSI 2017).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2016

17β-Estradiol alters oxidative damage and oxidative stress response protein expression in the mouse mammary gland

Yuan, L., Dietrich, A. K., Ziegler, Y. S. & Nardulli, A. M., May 5 2016, In : Molecular and Cellular Endocrinology. 426, p. 11-21 11 p.

Research output: Contribution to journalArticle

3D printing enables separation of orthogonal functions within a hydrogel particle

Raman, R., Clay, N. E., Sen, S., Melhem, M., Qin, E., Kong, H. & Bashir, R., Jan 1 2016, In : Biomedical microdevices. 18, 3, 49.

Research output: Contribution to journalArticle

A D-amino acid-containing neuropeptide discovery funnel

Livnat, I., Tai, H. C., Jansson, E. T., Bai, L., Romanova, E. V., Chen, T. T., Yu, K., Chen, S. A., Zhang, Y., Wang, Z. Y., Liu, D. D., Weiss, K. R., Jing, J. & Sweedler, J. V., 2016, In : Analytical chemistry. 88, 23, p. 11868-11876 9 p.

Research output: Contribution to journalArticle

Ageing-related changes in GABAergic inhibition in mouse auditory cortex, measured using in vitro flavoprotein autofluorescence imaging

Stebbings, K. A., Choi, H. W., Ravindra, A., Caspary, D. M., Turner, J. G. & Llano, D. A., Jan 1 2016, In : Journal of Physiology. 594, 1, p. 207-221 15 p.

Research output: Contribution to journalArticle

A Mosaicking Approach for In Vivo Thickness Mapping of the Human Tympanic Membrane Using Low Coherence Interferometry

Pande, P., Shelton, R. L., Monroy, G. L., Nolan, R. M. & Boppart, S. A., Oct 1 2016, In : JARO - Journal of the Association for Research in Otolaryngology. 17, 5, p. 403-416 14 p.

Research output: Contribution to journalArticle

Analytical capabilities of mass spectrometry imaging and its potential applications in food science

Li, B., Dunham, S. J. B., Dong, Y., Yoon, S., Zeng, M. & Sweedler, J. V., Jan 1 2016, In : Trends in Food Science and Technology. 47, p. 50-63 14 p.

Research output: Contribution to journalReview article

Analytical chemistry and our national science initiatives

Sweedler, J. V., Jul 5 2016, In : Analytical chemistry. 88, 13, 1 p.

Research output: Contribution to journalEditorial

Androgen-sensitized apoptosis of HPr-1AR human prostate epithelial cells

Chen, C., Dienhart, J. A. & Bolton, E. C., May 1 2016, In : PloS one. 11, 5, e0156145.

Research output: Contribution to journalArticle

A neuron-in-capillary platform for facile collection and mass spectrometric characterization of a secreted neuropeptide

Lee, C. Y., Fan, Y., Rubakhin, S. S., Yoon, S. & Sweedler, J. V., Jun 1 2016, In : Scientific reports. 6, 26940.

Research output: Contribution to journalArticle

A nose for seizures: A potential role for olfaction in the co-morbidity of depression and epilepsy?

Christian, C. A., Jul 1 2016, In : Epilepsy Currents. 16, 4, p. 256-257 2 p.

Research output: Contribution to journalComment/debate

Antifreeze proteins govern the precipitation of trehalose in a freezing-avoiding insect at low temperature

Wen, X., Wang, S., Duman, J. G., Fnu Arifin, J., Juwita, V., Goddard, W. A., Rios, A., Liu, F., Kim, S. K., Abrol, R., DeVries, A. L. & Henling, L. M., Jun 14 2016, In : Proceedings of the National Academy of Sciences of the United States of America. 113, 24, p. 6683-6688 6 p.

Research output: Contribution to journalArticle

Open Access

A one-step matrix application method for MALDI mass spectrometry imaging of bacterial colony biofilms

Li, B., Comi, T. J., Si, T., Dunham, S. J. B. & Sweedler, J. V., Nov 1 2016, In : Journal of Mass Spectrometry. 51, 11, p. 1030-1035 6 p.

Research output: Contribution to journalArticle

Aplysia locomotion: Network and behavioral actions of GdFFD, a D-amino acid-containing neuropeptide

Yang, C. Y., Yu, K., Wang, Y., Chen, S. A., Liu, D. D., Wang, Z. Y., Su, Y. N., Yang, S. Z., Chen, T. T., Livnat, I., Vilim, F. S., Cropper, E. C., Weiss, K. R., Sweedler, J. V. & Jing, J., Jan 1 2016, In : PloS one. 11, 1, e0147335.

Research output: Contribution to journalArticle

A protocol for the comprehensive flow cytometric analysis of immune cells in normal and inflamed murine non-lymphoid tissues

Yu, Y. R. A., O'Koren, E. G., Hotten, D. F., Kan, M. J., Kopin, D., Nelson, E. R., Que, L. & Gunn, M. D., Mar 2016, In : PloS one. 11, 3, e0150606.

Research output: Contribution to journalArticle

A Universal Identification Number for Authors? Go Ahead, Try It

Sweedler, J. V., May 3 2016, In : Analytical chemistry. 88, 9, 1 p.

Research output: Contribution to journalEditorial

Automated computational aberration correction method for broadband interferometric imaging techniques

Pande, P., Liu, Y. Z., South, F. A. & Boppart, S. A., Jul 15 2016, In : Optics Letters. 41, 14, p. 3324-3327 4 p.

Research output: Contribution to journalArticle

Automated interferometric synthetic aperture microscopy and computational adaptive optics for improved optical coherence tomography

Xu, Y., Liu, Y. Z., Boppart, S. A. & Carney, P. S., Mar 10 2016, In : Applied Optics. 55, 8, p. 2034-2041 8 p.

Research output: Contribution to journalArticle

Biaxial Dielectrophoresis Force Spectroscopy: A Stoichiometric Approach for Examining Intermolecular Weak Binding Interactions

Park, I. S., Kwak, T. J., Lee, G., Son, M., Choi, J. W., Choi, S., Nam, K., Lee, S. Y., Chang, W. J., Eom, K., Yoon, D. S., Lee, S., Bashir, R. & Lee, S. W., Apr 26 2016, In : ACS Nano. 10, 4, p. 4011-4019 9 p.

Research output: Contribution to journalArticle

Blocking rapid ice crystal growth through nonbasal plane adsorption of antifreeze proteins

Olijve, L. L. C., Meister, K., DeVries, A. L., Duman, J. G., Guo, S., Bakker, H. J. & Voetsa, I. K., Apr 5 2016, In : Proceedings of the National Academy of Sciences of the United States of America. 113, 14, p. 3740-3745 6 p.

Research output: Contribution to journalArticle

Open Access

Career Advice for Graduate Students and Postdoctoral Fellows

Sweedler, J. V., Mar 1 2016, In : Analytical chemistry. 88, 5, p. 2513-2514 2 p.

Research output: Contribution to journalEditorial

Cell migration and organization in three-dimensional in vitro culture driven by stiffness gradient

Joaquin, D., Grigola, M., Kwon, G., Blasius, C., Han, Y., Perlitz, D., Jiang, J., Ziegler, Y., Nardulli, A. & Hsia, K. J., Nov 1 2016, In : Biotechnology and bioengineering. 113, 11, p. 2496-2506 11 p.

Research output: Contribution to journalArticle

Characterization of bacillus subtilis colony biofilms via mass spectrometry and fluorescence imaging

Si, T., Li, B., Zhang, K., Xu, Y., Zhao, H. & Sweedler, J. V., Jun 3 2016, In : Journal of Proteome Research. 15, 6, p. 1955-1962 8 p.

Research output: Contribution to journalArticle

Chemotherapy enriches for an invasive triple-negative breast tumor cell subpopulation expressing a precursor form of N-cadherin on the cell surface

Nelson, E. R., Li, S., Kennedy, M., Payne, S., Kilibarda, K., Groth, J., Bowie, M., Parilla-Castellar, E., de Ridder, G., Marcom, P. K., Lyes, M., Peterson, B. L., Cook, M., Pizzo, S. V., McDonnell, D. P. & Bachelder, R. E., 2016, In : Oncotarget. 7, 51, p. 84030-84042 13 p.

Research output: Contribution to journalArticle

Choosing an Important Project: Take Two

Sweedler, J. V., Oct 4 2016, In : Analytical chemistry. 88, 19, 1 p.

Research output: Contribution to journalEditorial

Choosing an Important Project: The First Stage to Getting Research Published

Sweedler, J. V., Apr 5 2016, In : Analytical chemistry. 88, 7, 1 p.

Research output: Contribution to journalEditorial

Chronic exposure to bisphenol a affects uterine function during early pregnancy in mice

Li, Q., Davila, J., Kannan, A., Flaws, J. A., Bagchi, M. K. & Bagchi, I. C., May 2016, In : Endocrinology. 157, 5, p. 1764-1774 11 p.

Research output: Contribution to journalArticle

Computational adaptive optics of the human retina

South, F. A., Liu, Y. Z., Carney, P. S. & Boppart, S. A., Jan 1 2016, Ophthalmic Technologies XXVI. Ho, A., Manns, F. & Soderberg, P. G. (eds.). SPIE, 96931F. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9693).

Research output: Chapter in Book/Report/Conference proceedingConference contribution