Research Output

2016

Single-cell analysis at the threshold

Chen, X., Love, J. C., Navin, N. E., Pachter, L., Stubbington, M. J. T., Svensson, V., Sweedler, J. V. & Teichmann, S. A., Nov 8 2016, In : Nature Biotechnology. 34, 11, p. 1111-1118 8 p.

Research output: Contribution to journalReview article

Single Cell Peptide Heterogeneity of Rat Islets of Langerhans

Jansson, E. T., Comi, T. J., Rubakhin, S. S. & Sweedler, J. V., Sep 16 2016, In : ACS chemical biology. 11, 9, p. 2588-2595 8 p.

Research output: Contribution to journalArticle

Stain-free histopathology by programmable supercontinuum pulses

Tu, H., Liu, Y., Turchinovich, D., Marjanovic, M., Lyngsø, J. K., Lægsgaard, J., Chaney, E. J., Zhao, Y., You, S., Wilson, W. L., Xu, B., Dantus, M. & Boppart, S. A., Aug 1 2016, In : Nature Photonics. 10, 8, p. 534-540 7 p.

Research output: Contribution to journalArticle

SwordPlots: Exploring neuron behavior within dynamic communities of brain networks

Ma, C., Forbes, A. G., Llano, D. A., Berger-Wolf, T. & Kenyon, R. V., Jan 2016, In : Journal of Imaging Science and Technology. 60, 1, 010405.

Research output: Contribution to journalArticle

SwordPlots: Exploring neuron behavior within dynamic communities of brain networks

Ma, C., Forbes, A. G., Llano, D. A., Berger-Wolf, T. & Kenyon, R. V., Jan 1 2016, Human Vision and Electronic Imaging 2016, HVEI 2016. Pappas, T. N., de Ridder, H. & Rogowitz, B. E. (eds.). Society for Imaging Science and Technology, p. 268-280 13 p. (Human Vision and Electronic Imaging 2016, HVEI 2016).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

The Analytical Chemistry Advisory Boards

Sweedler, J. V., Aug 2 2016, In : Analytical chemistry. 88, 15, 1 p.

Research output: Contribution to journalEditorial

The anticancer potential of steroidal saponin, dioscin, isolated from wild yam (Dioscorea villosa) root extract in invasive human breast cancer cell line MDA-MB-231 in vitro

Aumsuwan, P., Khan, S. I., Khan, I. A., Ali, Z., Avula, B., Walker, L. A., Shariat-Madar, Z., Helferich, W. G., Katzenellenbogen, B. S. & Dasmahapatra, A. K., Feb 1 2016, In : Archives of Biochemistry and Biophysics. 591, p. 98-110 13 p.

Research output: Contribution to journalArticle

The Contribution of Cholesterol and Its Metabolites to the Pathophysiology of Breast Cancer

Baek, A. E. & Nelson, E. R., Aug 1 2016, In : Hormones and Cancer. 7, 4, p. 219-228 10 p.

Research output: Contribution to journalReview article

The impact of aging, hearing loss, and body weight on mouse hippocampal redox state, measured in brain slices using fluorescence imaging

Stebbings, K. A., Choi, H. W., Ravindra, A. & Llano, D. A., Jun 1 2016, In : Neurobiology of Aging. 42, p. 101-109 9 p.

Research output: Contribution to journalArticle

The Midwest Universities Analytical Chemistry Conference: Still the Midwest's Secret Weapon?

Sweedler, J. V., Nov 1 2016, In : Analytical chemistry. 88, 21, 1 p.

Research output: Contribution to journalEditorial

Thermal regulation of the brain-an anatomical and physiological review for clinical neuroscientists

Wang, H., Kim, M., Normoyle, K. P. & Llano, D., Jan 1 2016, In : Frontiers in Neuroscience. 9, JAN, 528.

Research output: Contribution to journalShort survey

Three dimensional conjugation of recombinant N-cadherin to a hydrogel for: In vitro anisotropic neural growth

Vega, J. C. M. L., Lee, M. K., Qin, E. C., Rich, M., Lee, K. Y., Kim, D. H., Chung, H. J., Leckband, D. E. & Kong, H., Jan 1 2016, In : Journal of Materials Chemistry B. 4, 42, p. 6803-6811 9 p.

Research output: Contribution to journalArticle

Thyroid hormone regulates vitellogenin by inducing estrogen receptor alpha in the goldfish liver

Nelson, E. R. & Habibi, H. R., Nov 15 2016, In : Molecular and Cellular Endocrinology. 436, p. 259-267 9 p.

Research output: Contribution to journalArticle

Victim Localization and Assessment System for Emergency Responders

Yoon, H., Shiftehfar, R., Cho, S., Spencer, B. F., Nelson, M. E. & Agha, G., Mar 1 2016, In : Journal of Computing in Civil Engineering. 30, 2, 04015011.

Research output: Contribution to journalArticle

2015

3D quantitative phase imaging of neural networks using WDT

Kim, T., Liu, S. C., Iyer, R., Gillette, M. U. & Popescu, G., Jan 1 2015, Quantitative Phase Imaging. Park, Y. & Popescu, G. (eds.). SPIE, 93361V. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9336).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A computational approach to high-resolution imaging of the living human retina without hardware adaptive optics

Shemonski, N. D., Adie, S. G., Liu, Y. Z., South, F. A., Carney, P. S. & Boppart, S. A., Jan 1 2015, Ophthalmic Technologies XXV. Ho, A., Manns, F. & Soderberg, P. G. (eds.). SPIE, 930710. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9307).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Adaptive, Dose-finding Phase 2 Trial Evaluating the Safety and Efficacy of ABT-089 in Mild to Moderate Alzheimer Disease

Lenz, R. A., Pritchett, Y. L., Berry, S. M., Llano, D. A., Han, S., Berry, D. A., Sadowsky, C. H., Abi-Saab, W. M. & Saltarelli, M. D., Sep 7 2015, In : Alzheimer Disease and Associated Disorders. 29, 3, p. 192-199 8 p.

Research output: Contribution to journalArticle

A dysregulated acetyl/SUMO switch of FXR promotes hepatic inflammation in obesity

Kim, D. H., Xiao, Z., Kwon, S., Sun, X., Ryerson, D., Tkac, D., Ma, P., Wu, S. Y., Chiang, C. M., Zhou, E., Xu, H. E., Palvimo, J. J., Chen, L. F., Kemper, B. & Kemper, J. K., Jan 14 2015, In : EMBO Journal. 34, 2, p. 184-199 16 p.

Research output: Contribution to journalArticle

An analysis of gene expression in PTSD implicates genes involved in the glucocorticoid receptor pathway and neural responses to stress

Logue, M. W., Smith, A. K., Baldwin, C., Wolf, E. J., Guffanti, G., Ratanatharathorn, A., Stone, A., Schichman, S. A., Humphries, D., Binder, E. B., Arloth, J., Menke, A., Uddin, M., Wildman, D., Galea, S., Aiello, A. E., Koenen, K. C. & Miller, M. W., Jul 1 2015, In : Psychoneuroendocrinology. 57, p. 1-13 13 p.

Research output: Contribution to journalArticle

Androgen receptor-mediated growth suppression of HPr-1AR and PC3-Lenti-AR prostate epithelial cells

Kim, Y. C., Chen, C. & Bolton, E. C., Sep 15 2015, In : PloS one. 10, 9, A1108.

Research output: Contribution to journalArticle

Androgens and androgen receptor signaling in prostate tumorigenesis

Zhou, Y., Bolton, E. C. & Jones, J. O., Oct 28 2015, In : Journal of Molecular Endocrinology. 54, 1, p. R15-R29

Research output: Contribution to journalReview article

A novel head-neck cooling device for concussion injury in contact sports

Wang, H., Wang, B., Jackson, K., Miller, C. M., Hasadsri, L., Llano, D., Rubin, R., Zimmerman, J., Johnson, C. & Sutton, B., 2015, In : Translational Neuroscience. 6, p. 20-31 12 p.

Research output: Contribution to journalArticle

A review of inter-and intraspecific variation in the eutherian placenta

Gundling, W. E. & Wildman, D. E., Mar 5 2015, In : Philosophical Transactions of the Royal Society B: Biological Sciences. 370, 1663

Research output: Contribution to journalReview article

A semiconductor bio-electrical platform with addressable thermal control circuits for accelerated bioassay development

Chen, T. T., Wen, C. H., Huang, J. C., Peng, Y. C., Liu, S., Su, S. H., Cheng, L. H., Lai, H. C., Liao, T. C., Lai, F. L., Cheng, C. W., Yang, C. K., Yang, J. H., Hsieh, Y. J., Salm, E., Reddy, B., Tsui, F., Liu, Y. S., Bashir, R. & Chen, M., Feb 20 2015, In : Technical Digest - International Electron Devices Meeting, IEDM. 2015-February, February, p. 15.4.1-15.4.4 7047058.

Research output: Contribution to journalConference article

Asthma-related immune responses in youth with asthma: Associations with maternal responsiveness and expressions of positive and negative affect in daily life

Tobin, E. T., Kane, H. S., Saleh, D. J., Wildman, D. E., Breen, E. C., Secord, E. & Slatcher, R. B., Oct 9 2015, In : Psychosomatic Medicine. 77, 8, p. 892-902 11 p.

Research output: Contribution to journalArticle

Automation of interferometric synthetic aperture microscopy

Xu, Y., Liu, Y. Z., Boppart, S. A. & Carney, P. S., Jan 1 2015, Proceedings of Frontiers in Optics 2015, FIO 2015. OSA - The Optical Society, (Proceedings of Frontiers in Optics 2015, FIO 2015).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Automation of interferometric synthetic aperture microscopy

Xu, Y., Liu, Y. Z., Boppart, S. A. & Carney, P. S., 2015, Proceedings of Frontiers in Optics 2015, FIO 2015. OSA - The Optical Society, (Proceedings of Frontiers in Optics 2015, FIO 2015).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Biodegradable thin metal foils and spin-on glass materials for transient electronics

Kang, S. K., Hwang, S. W., Yu, S., Seo, J. H., Corbin, E. A., Shin, J., Wie, D. S., Bashir, R., Ma, Z. & Rogers, J. A., Mar 25 2015, In : Advanced Functional Materials. 25, 12, p. 1789-1797 9 p.

Research output: Contribution to journalArticle

Biophotonics for assessing breast cancer

Erickson-Bhatt, S. J. & Boppart, S. A., Jun 25 2015, Biophotonics for Medical Applications. Elsevier Inc., p. 175-214 40 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biophysical properties of human breast cancer cells measured using silicon MEMS resonators and atomic force microscopy

Corbin, E. A., Kong, F., Lim, C. T., King, W. P. & Bashir, R., Feb 7 2015, In : Lab on a chip. 15, 3, p. 839-847 9 p.

Research output: Contribution to journalArticle

Classification of Large Cellular Populations and Discovery of Rare Cells Using Single Cell Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry

Ong, T. H., Kissick, D. J., Jansson, E. T., Comi, T. J., Romanova, E. V., Rubakhin, S. S. & Sweedler, J. V., Jul 21 2015, In : Analytical chemistry. 87, 14, p. 7036-7042 7 p.

Research output: Contribution to journalArticle

Computational adaptive optics for broadband optical interferometric tomography of biological tissue

S. A., B., 2015, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. SPIE, Vol. 9335. 933505

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Computational adaptive optics for broadband optical interferometric tomography of biological tissue

Boppart, S. A., Jan 1 2015, Adaptive Optics and Wavefront Control for Biological Systems. Kubby, J., Gigan, S. & Bifano, T. G. (eds.). SPIE, 933505. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9335).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Computational adaptive optics for high-resolution imaging of the living human retina

Boppart, S. A., Jan 1 2015, Adaptive Optics: Analysis, Methods and Systems, AO 2015. Optical Society of America (OSA), 1 p. (Adaptive Optics: Analysis, Methods and Systems, AO 2015).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Computational high-resolution optical imaging of the living human retina

Shemonski, N. D., South, F. A., Liu, Y. Z., Adie, S. G., Scott Carney, P. & Boppart, S. A., Jun 30 2015, In : Nature Photonics. 9, 7, p. 440-443 4 p.

Research output: Contribution to journalArticle

Computer modeling in neuroscience: From imperative to declarative programming: Maude modeling in neuroscience

Anastasio, T. J., Jan 1 2015, Logic, Rewriting and Concurrency - Essays Dedicated to Jose Meseguer on the Occasion of His 65th Birthday. Ölveczky, P. C., Talcott, C. & Martí-Oliet, N. (eds.). Springer-Verlag, p. 97-113 17 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9200).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Data analysis and signal postprocessing for optical coherence tomography

Ralston, T. S., Marks, D. L., Ahmad, A. & Boppart, S. A., Jan 1 2015, Optical Coherence Tomography: Technology and Applications, Second Edition. Springer International Publishing, p. 407-436 30 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Development of microfluidic devices for the manipulation of neuronal synapses

Jain, A. & Gillette, M. U., Mar 10 2015, Microfluidic and Compartmentalized Platforms for Neurobiological Research. Springer New York, Vol. 103. p. 127-137 11 p. (Neuromethods).

Research output: Chapter in Book/Report/Conference proceedingChapter

DICER1 and microRNA regulation in post-traumatic stress disorder with comorbid depression

Wingo, A. P., Almli, L. M., Stevens, J. J., Klengel, T., Uddin, M., Li, Y., Bustamante, A. C., Lori, A., Koen, N., Stein, D. J., Smith, A. K., Aiello, A. E., Koenen, K. C., Wildman, D. E., Galea, S., Bradley, B., Binder, E. B., Jin, P., Gibson, G. & Ressler, K. J., Dec 3 2015, In : Nature communications. 6, 10106.

Research output: Contribution to journalArticle

Differential peptidomics assessment of strain and age differences in mice in response to acute cocaine administration

Romanova, E. V., Rubakhin, S. S., Ossyra, J. R., Zombeck, J. A., Nosek, M. R., Sweedler, J. V. & Rhodes, J. S., Dec 1 2015, In : Journal of Neurochemistry. 135, 5, p. 1038-1048 11 p.

Research output: Contribution to journalArticle

Distinct mechanisms regulating mechanical force-induced Ca2+ signals at the plasma membrane and the ER in human MSCs

Kim, T. J., Joo, C., Seong, J., Vafabakhsh, R., Botvinick, E. L., Berns, M. W., Palmer, A. E., Wang, N., Ha, T., Jakobsson, E., Sun, J. & Wang, Y., Feb 10 2015, In : eLife. 2015, 4, e04876.

Research output: Contribution to journalArticle

DSP technology and methods for OCT

Ali, M., Ahmad, A. & Boppart, S. A., Jan 1 2015, Optical Coherence Tomography: Technology and Applications, Second Edition. Springer International Publishing, p. 437-458 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Dual suppression of estrogenic and inflammatory activities for targeting of endometriosis

Zhao, Y., Gong, P., Chen, Y., Nwachukwu, J. C., Srinivasan, S., Ko, C. M., Bagchi, M. K., Taylor, R. N., Korach, K. S., Nettles, K. W., Katzenellenbogen, J. A. & Katzenellenbogen, B. S., Jan 21 2015, In : Science Translational Medicine. 7, 271, 271ra9.

Research output: Contribution to journalArticle

Effect of recombinant interleukin-12 on murine skin regeneration and cell dynamics using in vivo multimodal microscopy

Li, J., Bower, A. J., Vainstein, V., Gluzman-Poltorak, Z., Chaney, E. J., Marjanovic, M., Basile, L. A. & Boppart, S. A., Oct 6 2015, In : Biomedical Optics Express. 6, 11, p. 4277-4287 11 p., 243477.

Research output: Contribution to journalArticle

Effects of exercise and dietary epigallocatechin gallate and β-alanine on skeletal muscle in aged mice

Pence, B. D., Gibbons, T. E., Bhattacharya, T. K., Mach, H., Ossyra, J. M., Petr, G., Martin, S. A., Wang, L., Rubakhin, S. S., Sweedler, J. V., McCusker, R. H., Kelley, K. W., Rhodes, J. S., Johnson, R. W. & Woods, J. A., Oct 26 2015, In : Applied Physiology, Nutrition and Metabolism. 41, 2, p. 181-190 10 p.

Research output: Contribution to journalArticle

Efficiency of antifreeze glycoproteins for cryopreservation of Nili-Ravi (Bubalus bubalis) buffalo bull sperm

Qadeer, S., Khan, M. A., Ansari, M. S., Rakha, B. A., Ejaz, R., Iqbal, R., Younis, M., Ullah, N., DeVries, A. L. & Akhter, S., Jun 1 2015, In : Animal reproduction science. 157, p. 56-62 7 p.

Research output: Contribution to journalArticle

Electronic desalting for controlling the ionic environment in droplet-based biosensing platforms

Swaminathan, V. V., Dak, P., Reddy, B., Salm, E., Duarte-Guevara, C., Zhong, Y., Fischer, A., Liu, Y. S., Alam, M. A. & Bashir, R., Feb 2 2015, In : Applied Physics Letters. 106, 5, 053105.

Research output: Contribution to journalArticle

Engineered Ionizable Side Chains

Cymes, G. D. & Grosman, C., 2015, In : Advances in experimental medicine and biology. 869, p. 5-23 19 p.

Research output: Contribution to journalArticle

Engineering as a new frontier for translational medicine

Chien, S., Bashir, R., Nerem, R. M. & Pettigrew, R., Apr 1 2015, In : Science Translational Medicine. 7, 281, 281fs13.

Research output: Contribution to journalArticle