Research Output

Open Access

Auditory system dysfunction in Alzheimer disease and its prodromal states: A review

Swords, G. M., Nguyen, L. T., Mudar, R. A. & Llano, D. A., Jul 2018, In : Ageing Research Reviews. 44, p. 49-59 11 p.

Research output: Contribution to journalReview article

Auditory thalamic circuits and GABAA receptor function: Putative mechanisms in tinnitus pathology

Caspary, D. M. & Llano, D. A., Jun 1 2017, In : Hearing Research. 349, p. 197-207 11 p.

Research output: Contribution to journalReview article

A unique combination of micronutrients rejuvenates cognitive performance in aged mice

Perez, S. D., Du, K., Rendeiro, C., Wang, L., Wu, Q., Rubakhin, S. S., Vazhappilly, R., Baxter, J. H., Sweedler, J. V. & Rhodes, J. S., Mar 1 2017, In : Behavioural Brain Research. 320, p. 97-112 16 p.

Research output: Contribution to journalArticle

A universal approach to the expression of human and rabbit cytochrome P450s of the 2C subfamily in Escherichia coli

Richardson, T. H., Jung, F., Griffin, K. J., Wester, M., Raucy, J. L., Kemper, B., Bornheim, L. M., Hassett, C., Omiecinski, C. J. & Johnson, E. F., Oct 1995, In : Archives of Biochemistry and Biophysics. 323, 1, p. 87-96 10 p.

Research output: Contribution to journalArticle

A Universal Identification Number for Authors? Go Ahead, Try It

Sweedler, J. V., May 3 2016, In : Analytical chemistry. 88, 9, 1 p.

Research output: Contribution to journalEditorial

Autocorrelation artifacts in optical coherence tomography and interferometric synthetic aperture microscopy

Davis, B. J., Ralston, T. S., Marks, D. L., Boppart, S. A. & Scott Carney, P., Jun 1 2007, In : Optics Letters. 32, 11, p. 1441-1443 3 p.

Research output: Contribution to journalArticle

Autofocus algorithm for dispersion correction in optical coherence tomography

Marks, D. L., Oldenburg, A. L., Reynolds, J. J. & Boppart, S. A., Jun 1 2003, In : Applied Optics. 42, 16, p. 3038-3046 9 p.

Research output: Contribution to journalArticle

Automated computational aberration correction method for broadband interferometric imaging techniques

Pande, P., Liu, Y. Z., South, F. A. & Boppart, S. A., Jul 15 2016, In : Optics Letters. 41, 14, p. 3324-3327 4 p.

Research output: Contribution to journalArticle

Automated fast computational adaptive optics for optical coherence tomography based on a stochastic parallel gradient descent algorithm

Zhu, D., Wang, R., Žurauskas, M., Pande, P., Bi, J., Yuan, Q., Wang, L., Gao, Z. & Boppart, S. A., Aug 3 2020, In : Optics Express. 28, 16, p. 23306-23319 14 p.

Research output: Contribution to journalArticle

Automated interferometric synthetic aperture microscopy and computational adaptive optics for improved optical coherence tomography

Xu, Y., Liu, Y. Z., Boppart, S. A. & Carney, P. S., Mar 10 2016, In : Applied Optics. 55, 8, p. 2034-2041 8 p.

Research output: Contribution to journalArticle

Automated optimization of water-water interaction parameters for a coarse-grained model

Fogarty, J. C., Chiu, S. W., Kirby, P., Jakobsson, E. & Pandit, S. A., Feb 13 2014, In : Journal of Physical Chemistry B. 118, 6, p. 1603-1611 9 p.

Research output: Contribution to journalArticle

Open Access

Automated sensorless single-shot closed-loop adaptive optics microscopy with feedback from computational adaptive optics

Iyer, R. R., Liu, Y. Z. & Boppart, S. A., Apr 29 2019, In : Optics Express. 27, 9, p. 12998-13014 17 p.

Research output: Contribution to journalArticle

Automation of interferometric synthetic aperture microscopy

Xu, Y., Liu, Y. Z., Boppart, S. A. & Carney, P. S., Jan 1 2015, Proceedings of Frontiers in Optics 2015, FIO 2015. OSA - The Optical Society, (Proceedings of Frontiers in Optics 2015, FIO 2015).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Automation of interferometric synthetic aperture microscopy

Xu, Y., Liu, Y. Z., Boppart, S. A. & Carney, P. S., 2015, Proceedings of Frontiers in Optics 2015, FIO 2015. OSA - The Optical Society, (Proceedings of Frontiers in Optics 2015, FIO 2015).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Autonomic control network active in Aplysia during locomotion includes neurons that express splice variants of R15-neuropeptides

Romanova, E. V., McKay, N., Weiss, K. R., Sweedler, J. V. & Koester, J., Jan 2007, In : Journal of neurophysiology. 97, 1, p. 481-491 11 p.

Research output: Contribution to journalArticle

A Versatile Strategy for Characterization and Imaging of Drip Flow Microbial Biofilms

Li, B., Dunham, S. J. B., Ellis, J. F., Lange, J. D., Smith, J. R., Yang, N., King, T. L., Amaya, K. R., Arnett, C. M. & Sweedler, J. V., Jun 5 2018, In : Analytical chemistry. 90, 11, p. 6725-6734 10 p.

Research output: Contribution to journalArticle

Avoiding a Retraction: Some Simple Guidelines on What NOT to Do

Sweedler, J. V., Aug 6 2019, In : Analytical chemistry. 91, 15, p. 9331-9332 2 p.

Research output: Contribution to journalEditorial

Axonal mRNA transport and localized translational regulation of κ-opioid receptor in primary neurons of dorsal root ganglia

Bi, J., Tsai, N. P., Lin, Y. P., Loh, H. H. & Wei, L. N., Dec 26 2006, In : Proceedings of the National Academy of Sciences of the United States of America. 103, 52, p. 19919-19924 6 p.

Research output: Contribution to journalArticle

Backbone statistical potential from local sequence-structure interactions in protein loops

Rata, I. A., Li, Y. & Jakobsson, E., Feb 11 2010, In : Journal of Physical Chemistry B. 114, 5, p. 1859-1869 11 p.

Research output: Contribution to journalArticle

Backscattering albedo contrast in OCT using plasmon-resonant gold nanorods

Oldenburg, A. L., Hansen, M. N., Wei, A. & Boppart, S. A., May 22 2007, Coherence Domain Optical Methods and Optical Coherence Tomography in Biomedicine XI. 64291Z. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 6429).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Bacteria-mediated delivery of nanoparticles and cargo into cells

Akin, D., Sturgis, J., Ragheb, K., Sherman, D., Burkholder, K., Robinson, J. P., Bhunia, A. K., Mohammed, S. & Bashir, R., Jul 2007, In : Nature Nanotechnology. 2, 7, p. 441-449 9 p.

Research output: Contribution to journalArticle

BAP31 is involved in the retention of cytochrome P450 2C2 in the endoplasmic reticulum

Szczesna-Skorupa, E. & Kemper, B., Feb 17 2006, In : Journal of Biological Chemistry. 281, 7, p. 4142-4148 7 p.

Research output: Contribution to journalArticle

Open Access

Base-induced delignification of miscanthus x giganteus studied by three-dimensional confocal raman imaging

Chu, L. Q., Masyuko, R., Sweedler, J. V. & Bohn, P. W., Jul 1 2010, In : Bioresource Technology. 101, 13, p. 4919-4925 7 p.

Research output: Contribution to journalArticle

Basic mechanisms of circadian rhythms and their relation to the sleep/wake cycle

Gillette, M. U. & Abbott, S. M., Jan 1 2006, Neuroendocrine Correlates of Sleep/Wakefulness. Springer US, p. 19-40 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Basolateral membrane chloride transport in isolated epithelia of frog skin

Stoddard, J. S., Jakobsson, E. & Helman, S. I., 1985, In : American Journal of Physiology - Cell Physiology. 18, 2, p. C318-C329

Research output: Contribution to journalArticle

Bazedoxifene exhibits antiestrogenic activity in animal models of tamoxifen-resistant breast cancer: Implications for treatment of advanced disease

Wardell, S. E., Nelson, E. R., Chao, C. A. & McDonnell, D. P., May 1 2013, In : Clinical Cancer Research. 19, 9, p. 2420-2431 12 p.

Research output: Contribution to journalArticle

Beating the Nernst limit of 59mV/pH with double-gated nano-scale field-effect transistors and its applications to ultra-sensitive DNA biosensors

Go, J., Nair, P. R., Reddy, B., Dorvel, B., Bashir, R. & Alam, M. A., Dec 1 2010, 2010 IEEE International Electron Devices Meeting, IEDM 2010. p. 8.7.1-8.7.4 5703325. (Technical Digest - International Electron Devices Meeting, IEDM).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Behavioral and cellular responses to pulses of low doses of estradiol-17β

Clark, A. S. & Roy, E. J., Apr 1983, In : Physiology and Behavior. 30, 4, p. 561-565 5 p.

Research output: Contribution to journalArticle

Behavioral hierarchies

Gillette, R., Jan 1 2009, Encyclopedia of Neuroscience. Elsevier Ltd, p. 145-154 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biaxial Dielectrophoresis Force Spectroscopy: A Stoichiometric Approach for Examining Intermolecular Weak Binding Interactions

Park, I. S., Kwak, T. J., Lee, G., Son, M., Choi, J. W., Choi, S., Nam, K., Lee, S. Y., Chang, W. J., Eom, K., Yoon, D. S., Lee, S., Bashir, R. & Lee, S. W., Apr 26 2016, In : ACS Nano. 10, 4, p. 4011-4019 9 p.

Research output: Contribution to journalArticle

Bibenzyl- and stilbene-core compounds with non-polar linker atom substituents as selective ligands for estrogen receptor beta

Waibel, M., De Angelis, M., Stossi, F., Kieser, K. J., Carlson, K. E., Katzenellenbogen, B. S. & Katzenellenbogen, J. A., Sep 2009, In : European Journal of Medicinal Chemistry. 44, 9, p. 3412-3424 13 p.

Research output: Contribution to journalArticle

Bifurcation theory explains waveform variability in a congenital eye movement disorder

Barreiro, A. K., Bronski, J. C. & Anastasio, T. J., Jan 1 2009, In : Journal of Computational Neuroscience. 26, 2, p. 321-329 9 p.

Research output: Contribution to journalArticle

Bile acid excess induces cardiomyopathy and metabolic dysfunctions in the heart

Desai, M. S., Mathur, B., Eblimit, Z., Vasquez, H., Taegtmeyer, H., Karpen, S. J., Penny, D. J., Moore, D. D. & Anakk, S., Jan 1 2017, In : Hepatology. 65, 1, p. 189-201 13 p.

Research output: Contribution to journalArticle

Bile acid receptor agonist GW4064 regulates PPARγ coactivator-1α expression through estrogen receptor-related receptor α

Dwivedi, S. K. D., Singh, N., Kumari, R., Mishra, J. S., Tripathi, S., Banerjee, P., Shah, P., Kukshal, V., Tyagi, A. M., Gaikwad, A. N., Chaturvedi, R. K., Mishra, D. P., Trivedi, A. K., Sanyal, S., Chattopadhyay, N., Ramachandran, R., Siddiqi, M. I., Bandyopadhyay, A., Arora, A., Lundåsen, T. & 3 others, Anakk, S. P., Moore, D. D. & Sanyal, S., Jun 2011, In : Molecular Endocrinology. 25, 6, p. 922-932 11 p.

Research output: Contribution to journalArticle

Bile Acids Activate YAP to Promote Liver Carcinogenesis

Anakk, S., Bhosale, M., Schmidt, V. A., Johnson, R. L., Finegold, M. J. & Moore, D. D., Nov 27 2013, In : Cell Reports. 5, 4, p. 1060-1069 10 p.

Research output: Contribution to journalArticle

Bile acid signal-induced phosphorylation of small heterodimer partner by protein kinase Cζ is critical for epigenomic regulation of liver metabolic genes

Seok, S., Kanamaluru, D., Xiao, Z., Ryerson, D., Choi, S. E., Suino-Powell, K., Xu, H. E., Veenstra, T. D. & Kemper, J. K., Aug 9 2013, In : Journal of Biological Chemistry. 288, 32, p. 23252-23263 12 p.

Research output: Contribution to journalArticle

Bile acid signaling pathways increase stability of small heterodimer partner (SHP) by inhibiting ubiquitin-proteasomal degradation

Miao, J., Xiao, Z., Kanamaluru, D., Min, G., Yau, P. M., Veenstra, T. D., Ellis, E., Strom, S., Suino-Powell, K., Xu, H. E. & Kemper, J. K., Apr 15 2009, In : Genes and Development. 23, 8, p. 986-996 11 p.

Research output: Contribution to journalArticle

Bile acid treatment and FXR agonism lower postprandial lipemia in mice

Farr, S., Stankovic, B., Hoffman, S., Masoudpoor, H., Baker, C., Taher, J., Dean, A. E., Anakk, S. & Adeli, K., 2020, In : American Journal of Physiology - Gastrointestinal and Liver Physiology. 318, 4, p. H682-G693

Research output: Contribution to journalArticle

Binding of the estrogen receptor DNA-binding domain to the estrogen response element induces DNA bending

Nardulli, A. M. & Shapiro, D. J., May 1992, In : Molecular and cellular biology. 12, 5, p. 2037-2042 6 p.

Research output: Contribution to journalArticle

Bioactivities, Estrogen Receptor Interactions, and Plasminogen Activator-inducing Activities of Tamoxifen and Hydroxy-tamoxifen Isomers in MCF-7 Human Breast Cancer Cells

Katzenellenbogen, B. S., Norman, M. J., Eckert, R. L., Peltz, S. W. & Mangel, W. F., Jan 1 1984, In : Cancer Research. 44, 1, p. 112-119 8 p.

Research output: Contribution to journalArticle

Biodegradable Monocrystalline Silicon Photovoltaic Microcells as Power Supplies for Transient Biomedical Implants

Lu, L., Yang, Z., Meacham, K., Cvetkovic, C., Corbin, E. A., Vázquez-Guardado, A., Xue, M., Yin, L., Boroumand, J., Pakeltis, G., Sang, T., Yu, K. J., Chanda, D., Bashir, R., Gereau, R. W., Sheng, X. & Rogers, J. A., Jun 5 2018, In : Advanced Energy Materials. 8, 16, 1703035.

Research output: Contribution to journalArticle

Biodegradable thin metal foils and spin-on glass materials for transient electronics

Kang, S. K., Hwang, S. W., Yu, S., Seo, J. H., Corbin, E. A., Shin, J., Wie, D. S., Bashir, R., Ma, Z. & Rogers, J. A., Mar 25 2015, In : Advanced Functional Materials. 25, 12, p. 1789-1797 9 p.

Research output: Contribution to journalArticle

Biohybrid actuators for robotics: A review of devices actuated by living cells

Ricotti, L., Trimmer, B., Feinberg, A. W., Raman, R., Parker, K. K., Bashir, R., Sitti, M., Martel, S., Dario, P. & Menciassi, A., Nov 22 2017, In : Science Robotics. 2, 12, eaaq0495.

Research output: Contribution to journalReview article

Bioinformatics for prohormone and neuropeptide discovery

Southey, B. R., Romanova, E. V., Rodriguez-Zas, S. L. & Sweedler, J. V., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 71-96 26 p. (Methods in Molecular Biology; vol. 1719).

Research output: Chapter in Book/Report/Conference proceedingChapter

Biological activities of tamoxifen aziridine, an antiestrogen-based affinity label for the estrogen receptor, in vivo and in vitro

Wei, L. L., Mangel, W. F. & Katzenellenbogen, B. S., Dec 1985, In : Journal of Steroid Biochemistry. 23, 6 PART 1, p. 875-881 7 p.

Research output: Contribution to journalArticle

Biological Activity and Receptor Binding of a Strongly Interacting Estrogen in Human Breast Cancer Cells

Reiner, G. C. A., Katzenellenbogen, B. S., Bindal, R. D. & Katzenellenbogen, J. A., Jun 1 1984, In : Cancer Research. 44, 6, p. 2302-2308 7 p.

Research output: Contribution to journalArticle