Research Output

2020

Acute exposure to physiological doses of triiodothyronine does not induce gonadal caspase 3 activity in goldfish in vitro

Allan, E. R. O., Dores, C. B., Nelson, E. R. & Habibi, H. R., Apr 1 2020, In : General and Comparative Endocrinology. 289, 113382.

Research output: Contribution to journalArticle

A hypoxia-induced Rab pathway regulates embryo implantation by controlled trafficking of secretory granules

Bhurke, A., Kannan, A., Neff, A., Ma, Q., Laws, M. J., Taylor, R. N., Bagchi, M. K. & Bagchi, I. C., Jun 23 2020, In : Proceedings of the National Academy of Sciences of the United States of America. 117, 25, p. 14532-14542 11 p.

Research output: Contribution to journalArticle

A mass spectrometry-based high-throughput screening method for engineering fatty acid synthases with improved production of medium-chain fatty acids

Xue, P., Si, T., Mishra, S., Zhang, L., Choe, K., Sweedler, J. V. & Zhao, H., Jul 1 2020, In : Biotechnology and bioengineering. 117, 7, p. 2131-2138 8 p.

Research output: Contribution to journalArticle

A sensitive and specific nanosensor for monitoring extracellular potassium levels in the brain

Liu, J., Li, F., Wang, Y., Pan, L., Lin, P., Zhang, B., Zheng, Y., Xu, Y., Liao, H., Ko, G., Fei, F., Xu, C., Du, Y., Shin, K., Kim, D., Jang, S. S., Chung, H. J., Tian, H., Wang, Q., Guo, W. & 4 others, Nam, J. M., Chen, Z., Hyeon, T. & Ling, D., Apr 1 2020, In : Nature Nanotechnology. 15, 4, p. 321-330 10 p.

Research output: Contribution to journalArticle

Assessing the Effect of Middle Ear Effusions on Wideband Acoustic Immittance Using Optical Coherence Tomography

Won, J., Monroy, G. L., Huang, P. C., Hill, M. C., Novak, M. A., Porter, R. G., Spillman, D. R., Chaney, E. J., Barkalifa, R. & Boppart, S. A., Jul 1 2020, In : Ear and hearing. p. 811-824 14 p.

Research output: Contribution to journalArticle

Assessing the severity of psoriasis through multivariate analysis of optical images from non-lesional skin

Žurauskas, M., Barkalifa, R., Alex, A., Marjanovic, M., Spillman, D. R., Mukherjee, P., Neitzel, C. D., Lee, W., Medler, J., Arp, Z., Cleveland, M., Hood, S. & Boppart, S. A., Dec 1 2020, In : Scientific reports. 10, 1, 9154.

Research output: Contribution to journalArticle

Open Access

Bile acid treatment and FXR agonism lower postprandial lipemia in mice

Farr, S., Stankovic, B., Hoffman, S., Masoudpoor, H., Baker, C., Taher, J., Dean, A. E., Anakk, S. & Adeli, K., 2020, In : American Journal of Physiology - Gastrointestinal and Liver Physiology. 318, 4, p. H682-G693

Research output: Contribution to journalArticle

Open Access

Chemistry, Bioengineering, or the Medical Sciences: Where Do Our Manuscripts Come From?

Sweedler, J. V., 2020, (Accepted/In press) In : Analytical chemistry.

Research output: Contribution to journalEditorial

Open Access

Chronic activation of gp1 mglurs leads to distinct refinement of neural network activity through non-canonical p53 and akt signaling

Liu, D. C., Soriano, S., Yook, Y., Lizarazo, S., Eagleman, D. E. & Tsai, N. P., Mar 1 2020, In : eNeuro. 7, 2, ENEURO.0438-19.2020.

Research output: Contribution to journalArticle

Open Access

Circadian rhythm of redox state regulates membrane excitability in hippocampal CA1 neurons

Naseri Kouzehgarani, G., Bothwell, M. Y. & Gillette, M. U., Jan 1 2020, In : European Journal of Neuroscience. 51, 1, p. 34-46 13 p.

Research output: Contribution to journalArticle

Current understanding and emerging applications of 3D crumpling mediated 2D material-liquid interactions

Snapp, P., Heiranian, M., Hwang, M. T., Bashir, R., Aluru, N. R. & Nam, S. W., 2020, (Accepted/In press) In : Current Opinion in Solid State and Materials Science. 100836.

Research output: Contribution to journalArticle

Depixelation and enhancement of fiber bundle images by bundle rotation

Renteria, C., Suárez, J., Licudine, A. & Boppart, S. A., Jan 10 2020, In : Applied Optics. 59, 2, p. 536-544 9 p.

Research output: Contribution to journalArticle

Differential post-translational amino acid isomerization found among neuropeptides in aplysia californica

Mast, D. H., Checco, J. W. & Sweedler, J. V., Jan 17 2020, In : ACS chemical biology. 15, 1, p. 272-281 10 p.

Research output: Contribution to journalArticle

Dynamic Tracking Algorithm for Time-Varying Neuronal Network Connectivity using Wide-Field Optical Image Video Sequences

Renteria, C., Liu, Y. Z., Chaney, E. J., Barkalifa, R., Sengupta, P. & Boppart, S. A., Dec 1 2020, In : Scientific reports. 10, 1, 2540.

Research output: Contribution to journalArticle

Open Access

Emergence of functional neuromuscular junctions in an engineered, multicellular spinal cord-muscle bioactuator

Kaufman, C. D., Liu, S. C., Cvetkovic, C., Lee, C. A., Naseri Kouzehgarani, G., Gillette, R., Bashir, R. & Gillette, M. U., Jun 1 2020, In : Bioengineering. 4, 2, 026104.

Research output: Contribution to journalArticle

Open Access

Fasting-induced FGF21 signaling activates hepatic autophagy and lipid degradation via JMJD3 histone demethylase

Byun, S., Seok, S., Kim, Y. C., Zhang, Y., Yau, P., Iwamori, N., Xu, H. E., Ma, J., Kemper, B. & Kemper, J. K., Dec 1 2020, In : Nature communications. 11, 1, 807.

Research output: Contribution to journalArticle

Open Access

Guide to transcranial imaging of sound-evoked activity in the auditory cortex of GCAMP6s mice in vivo

Yudintsev, G., Lee, C. M., Asilador, A. R. & Llano, D. A., Jan 1 2020, Neuromethods. Humana Press Inc., p. 45-68 24 p. (Neuromethods; vol. 152).

Research output: Chapter in Book/Report/Conference proceedingChapter

Heterozygous loss of epilepsy gene KCNQ2 alters social, repetitive and exploratory behaviors

Kim, E. C., Patel, J., Zhang, J., Soh, H., Rhodes, J. S., Tzingounis, A. V. & Chung, H. J., Jan 1 2020, In : Genes, Brain and Behavior. 19, 1, e12599.

Research output: Contribution to journalArticle

Open Access

High Sensitivity Graphene Field Effect Transistor-Based Detection of DNA Amplification

Ganguli, A., Faramarzi, V., Mostafa, A., Hwang, M. T., You, S. & Bashir, R., Jul 1 2020, In : Advanced Functional Materials. 30, 28, 2001031.

Research output: Contribution to journalArticle

Identifying mutation hotspots reveals pathogenetic mechanisms of KCNQ2 epileptic encephalopathy

Zhang, J., Kim, E. C., Chen, C., Procko, E., Pant, S., Lam, K., Patel, J., Choi, R., Hong, M., Joshi, D., Bolton, E., Tajkhorshid, E. & Chung, H. J., Dec 1 2020, In : Scientific reports. 10, 1, 4756.

Research output: Contribution to journalArticle

Open Access

Inhibition of Bacterial Ice Nucleators Is Not an Intrinsic Property of Antifreeze Proteins

Schwidetzky, R., Kunert, A. T., Bonn, M., Pöschl, U., Ramløv, H., DeVries, A. L., Fröhlich-Nowoisky, J. & Meister, K., Jun 18 2020, In : The journal of physical chemistry. B. 124, 24, p. 4889-4895 7 p.

Research output: Contribution to journalArticle

Injection of adeno-associated virus containing optogenetic and chemogenetic probes into the neonatal mouse brain

Huynh, N. C., Ibrahim, B. A., Lee, C. M., Key, M. N. & Llano, D. A., Jan 1 2020, Neuromethods. Humana Press Inc., p. 19-43 25 p. (Neuromethods; vol. 152).

Research output: Chapter in Book/Report/Conference proceedingChapter

Insulin signaling via progesterone-regulated insulin receptor substrate 2 is critical for human uterine decidualization

Neff, A. M., Yu, J., Taylor, R. N., Bagchi, I. C. & Bagchi, M. K., Jan 1 2020, In : Endocrinology (United States). 161, 1

Research output: Contribution to journalArticle

Open Access

Integration of Graphene Electrodes with 3D Skeletal Muscle Tissue Models

Kim, Y., Pagan-Diaz, G., Gapinske, L., Kim, Y., Suh, J., Solomon, E., Harris, J. F., Nam, S. W. & Bashir, R., Jan 1 2020, (Accepted/In press) In : Advanced Healthcare Materials. 1901137.

Research output: Contribution to journalArticle

Interaction variability shapes succession of synthetic microbial ecosystems

Liu, F., Mao, J., Kong, W., Hua, Q., Feng, Y., Bashir, R. & Lu, T., Dec 1 2020, In : Nature communications. 11, 1, 309.

Research output: Contribution to journalArticle

Open Access

MicroRNA-210 Promotes Bile Acid–Induced Cholestatic Liver Injury by Targeting Mixed-Lineage Leukemia-4 Methyltransferase in Mice

Kim, Y. C., Jung, H., Seok, S., Zhang, Y., Ma, J., Li, T., Kemper, B. & Kemper, J. K., Jun 1 2020, In : Hepatology. 71, 6, p. 2118-2134 17 p.

Research output: Contribution to journalArticle

Modulating electrophysiology of motor neural networks via optogenetic stimulation during neurogenesis and synaptogenesis

Pagan-Diaz, G. J., Drnevich, J., Ramos-Cruz, K. P., Sam, R., Sengupta, P. & Bashir, R., Dec 1 2020, In : Scientific reports. 10, 1, 12460.

Research output: Contribution to journalArticle

Open Access

Non-invasive monitoring of pharmacodynamics during the skin wound healing process using multimodal optical microscopy

Rico-Jimenez, J., Lee, J. H., Alex, A., Musaad, S., Chaney, E., Barkalifa, R., Olson, E., Adams, D., Marjanovic, M., Arp, Z. & Boppart, S. A., Apr 22 2020, In : BMJ Open Diabetes Research and Care. 8, 1, e000974.

Research output: Contribution to journalArticle

Open Access

On-Chip Electrical Monitoring of Real-Time “Soft” and “Hard” Protein Corona Formation on Carbon Nanoparticles

Srivastava, I., Khan, M. S., Dighe, K., Alafeef, M., Wang, Z., Banerjee, T., Ghonge, T., Grove, L. M., Bashir, R. & Pan, D., Jul 1 2020, In : Small Methods. 4, 7, 2000099.

Research output: Contribution to journalArticle

Optical coherence tomography imaging of excised canine apocrine gland anal sac adenocarcinoma tumours

Dornbusch, J. A., Selmic, L., Huang, P. C., Samuelson, J. P., Cocca, C., Wavreille, V. A. & Boppart, S. A., 2020, (Accepted/In press) In : Veterinary and comparative oncology.

Research output: Contribution to journalArticle

Polycystin 2 is increased in disease to protect against stress-induced cell death

Brill, A. L., Fischer, T. T., Walters, J. M., Marlier, A., Sewanan, L. R., Wilson, P. C., Johnson, E. K., Moeckel, G., Cantley, L. G., Campbell, S. G., Nerbonne, J. M., Chung, H. J., Robert, M. E. & Ehrlich, B. E., Dec 1 2020, In : Scientific reports. 10, 1, 386.

Research output: Contribution to journalArticle

Open Access

Quantitative Characterization of the Neuropeptide Level Changes in Dorsal Horn and Dorsal Root Ganglia Regions of the Murine Itch Models

Tillmaand, E. G., Anapindi, K. D. B., De La Toba, E. A., Guo, C. J., Krebs, J., Lenhart, A. E., Liu, Q. & Sweedler, J. V., Mar 6 2020, In : Journal of Proteome Research. 19, 3, p. 1248-1257 10 p.

Research output: Contribution to journalArticle

Quantitative Imprint Mass Spectrometry Imaging of Endogenous Ceramides in Rat Brain Tissue with Kinetic Calibration

Wu, Q., Rubakhin, S. S. & Sweedler, J. V., May 5 2020, In : Analytical chemistry. 92, 9, p. 6613-6621 9 p.

Research output: Contribution to journalArticle

Rapid Isothermal Amplification and Portable Detection System for SARS-CoV-2

Ganguli, A., Mostafa, A., Berger, J., Aydin, M., Sun, F., Valera Cano, E. A., Cunningham, B. T., King, W. P. & Bashir, R., May 21 2020, (In preparation) Cold Spring Harbor Laboratory Press, 31 p. (bioRxiv).

Research output: Working paper

Show Me the Meaning of Being Lonely (and Its Effects on Seizure Burden and Comorbidities)

Lozano, L. & Christian, C. A., Jan 1 2020, In : Epilepsy Currents. 20, 1, p. 48-50 3 p.

Research output: Contribution to journalArticle

Open Access

Simple Aesthetic Sense and Addiction Emerge in Neural Relations of Cost-Benefit Decision in Foraging

Gribkova, E. D., Catanho, M. & Gillette, R., Jun 15 2020, In : Scientific reports. 10, 1, 9627.

Research output: Contribution to journalArticle

Open Access

Simultaneous electrical detection of IL-6 and PCT using a microfluidic biochip platform

Berger, J., Valera, E., Jankelow, A., Garcia, C., Akhand, M., Heredia, J., Ghonge, T., Liu, C., Font-Bartumeus, V., Oshana, G., Tiao, J. & Bashir, R., Jun 1 2020, In : Biomedical microdevices. 22, 2, 36.

Research output: Contribution to journalArticle

Smartphone-Based Multiplex 30-minute Nucleic Acid Test of Live Virus from Nasal Swab Extract

Sun, F., Ganguli, A., Nguyen, J., Brisbin, R., Shanmugam, K., Hirschberg, D. L., Wheeler, M. B., Bashir, R., Nash, D. M. & Cunningham, B. T., May 7 2020, In : Lab on a chip. 20, 9, p. 1621-1627 7 p.

Research output: Contribution to journalArticle

Strange Advice for Authors: Submit Your Manuscript with a Short Title on a Weekday

Sweedler, J. V., Feb 4 2020, In : Analytical chemistry. 92, 3, p. 2351-2352 2 p.

Research output: Contribution to journalEditorial

Open Access

Synergistic Combination of Oncolytic Virotherapy and Immunotherapy for Glioma

Tang, B., Guo, Z. S., Bartlett, D. L., Yan, D. Z., Schane, C. P., Thomas, D. L., Liu, J., McFadden, G., Shisler, J. L., Roy, E. J. & Roy, E. J., May 1 2020, In : Clinical Cancer Research. 26, 9, p. 2216-2230 15 p.

Research output: Contribution to journalArticle

The Addition of Executive Editors: A Change for the Better!

Sweedler, J. V., Pemberton, J. & Zhang, X., May 5 2020, In : Analytical chemistry. 92, 9, p. 6185-6186 2 p.

Research output: Contribution to journalEditorial

The tissue-specific effects of different 17β-estradiol doses reveal the key sensitizing role of AF1 domain in ERα activity

Fontaine, C., Buscato, M., Vinel, A., Giton, F., Raymond-Letron, I., Kim, S. H., Katzenellenbogen, B. S., Katzenellenbogen, J. A., Gourdy, P., Milon, A., Flouriot, G., Ohlsson, C., Lenfant, F. & Arnal, J. F., Apr 5 2020, In : Molecular and Cellular Endocrinology. 505, 110741.

Research output: Contribution to journalArticle

Two-photon microscope using a fiber-based approach for supercontinuum generation and light delivery to a small-footprint optical head

Zhao, Y., Maguluri, G., Daniel Ferguson, R., Tu, H., Paul, K., Boppart, S. A., Llano, D. A. & Iftimia, N., Feb 15 2020, In : Optics Letters. 45, 4, p. 909-912 4 p.

Research output: Contribution to journalArticle