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Review article
2020

Progress in the Enzymology of the Mitochondrial Diseases of Lipoic Acid Requiring Enzymes

Cronan, J. E., May 21 2020, In : Frontiers in Genetics. 11, 510.

Research output: Contribution to journalReview article

Open Access
2019

Evolutionary adaptations that enable enzymes to tolerate oxidative stress

Imlay, J. A., Sethu, R. & Rohaun, S. K., Aug 20 2019, In : Free Radical Biology and Medicine. 140, p. 4-13 10 p.

Research output: Contribution to journalReview article

Guidelines for DNA recombination and repair studies: Cellular assays of DNA repair pathways

Klein, H. L., Bačinskaja, G., Che, J., Cheblal, A., Elango, R., Epshtein, A., Fitzgerald, D. M., Gómez-González, B., Khan, S. R., Kumar, S., Leland, B. A., Marie, L., Mei, Q., Miné-Hattab, J., Piotrowska, A., Polleys, E. J., Putnam, C. D., Radchenko, E. A., Saada, A. A., Sakofsky, C. J. & 28 others, Shim, E. Y., Stracy, M., Xia, J., Yan, Z., Yin, Y., Aguilera, A., Argueso, J. L., Freudenreich, C. H., Gasser, S. M., Gordenin, D. A., Haber, J. E., Ira, G., Jinks-Robertson, S., King, M. C., Kolodner, R. D., Kuzminov, A., Lambert, S. A. E., Lee, S. E., Miller, K. M., Mirkin, S. M., Petes, T. D., Rosenberg, S. M., Rothstein, R., Symington, L. S., Zawadzki, P., Kim, N., Lisby, M. & Malkova, A., Jan 2019, In : Microbial Cell. 6, 1, p. 1-64 64 p.

Research output: Contribution to journalReview article

Open Access

Pasteurella multocida: Genotypes and genomics

Peng, Z., Wang, X., Zhou, R., Chen, H., Wilson, B. A. & Wu, B., 2019, In : Microbiology and Molecular Biology Reviews. 83, 4, e00014-19.

Research output: Contribution to journalReview article

Teaching an Old Virus New Tricks: A Review on New Approaches to Study Age-Old Questions in Influenza Biology

Lakdawala, S. S., Lee, N. & Brooke, C. B., Oct 4 2019, In : Journal of Molecular Biology. 431, 21, p. 4247-4258 12 p.

Research output: Contribution to journalReview article

The bare necessities: Uncovering essential and condition-critical genes with transposon sequencing

Shields, R. C. & Jensen, P. A., Apr 2019, In : Molecular Oral Microbiology. 34, 2, p. 39-50 12 p.

Research output: Contribution to journalReview article

Where in the world do bacteria experience oxidative stress?

Imlay, J. A., Feb 1 2019, In : Environmental Microbiology. 21, 2, p. 521-530 10 p.

Research output: Contribution to journalReview article

2018

Advances in synthesis of biotin and assembly of lipoic acid

Cronan, J. E., Dec 2018, In : Current Opinion in Chemical Biology. 47, p. 60-66 7 p.

Research output: Contribution to journalReview article

Causes and consequences of spatial within-host viral spread

Gallagher, M. E., Brooke, C. B., Ke, R. & Koelle, K., Nov 13 2018, In : Viruses. 10, 11, 627.

Research output: Contribution to journalReview article

RiPP antibiotics: biosynthesis and engineering potential

Hudson, G. A. & Mitchell, D. A., Oct 2018, In : Current Opinion in Microbiology. 45, p. 61-69 9 p.

Research output: Contribution to journalReview article

The parts are greater than the whole: the role of semi-infectious particles in influenza A virus biology

Diefenbacher, M., Sun, J. & Brooke, C. B., Dec 2018, In : Current Opinion in Virology. 33, p. 42-46 5 p.

Research output: Contribution to journalReview article

2017

Mechanisms of gene flow in archaea

Wagner, A., Whitaker, R. J., Krause, D. J., Heilers, J. H., Van Wolferen, M., Van Der Does, C. & Albers, S. V., Aug 1 2017, In : Nature Reviews Microbiology. 15, 8, p. 492-501 10 p.

Research output: Contribution to journalReview article

Mechanisms of Salmonella pathogenesis in animal models

Palmer, A. D. & Slauch, J. M., Nov 17 2017, In : Human and Ecological Risk Assessment. 23, 8, p. 1877-1892 16 p.

Research output: Contribution to journalReview article

Review: Capripoxvirus Diseases: Current Status and Opportunities for Control

Tuppurainen, E. S. M., Venter, E. H., Shisler, J. L., Gari, G., Mekonnen, G. A., Juleff, N., Lyons, N. A., De Clercq, K., Upton, C., Bowden, T. R., Babiuk, S. & Babiuk, L. A., Jun 2017, In : Transboundary and Emerging Diseases. 64, 3, p. 729-745 17 p.

Research output: Contribution to journalReview article

YcaO-Dependent Posttranslational Amide Activation: Biosynthesis, Structure, and Function

Burkhart, B. J., Schwalen, C. J., Mann, G., Naismith, J. H. & Mitchell, D. A., Apr 26 2017, In : Chemical reviews. 117, 8, p. 5389-5456 68 p.

Research output: Contribution to journalReview article

2016

Chromosomal Replication Complexity: A Novel DNA Metrics and Genome Instability Factor

Kuzminov, A., Oct 2016, In : PLoS genetics. 12, 10, e1006229.

Research output: Contribution to journalReview article

Targeted treatment for bacterial infections: prospects for pathogen-specific antibiotics coupled with rapid diagnostics

Maxson, T. & Mitchell, D. A., Jan 1 2016, In : Tetrahedron. 72, 25, p. 3609-3624 16 p.

Research output: Contribution to journalReview article

Using genomics for natural product structure elucidation

Tietz, J. I. & Mitchell, D. A., Jun 1 2016, In : Current Topics in Medicinal Chemistry. 16, 15, p. 1645-1694 50 p.

Research output: Contribution to journalReview article

2015

Cheaters must prosper: Reconciling theoretical and empirical perspectives on cheating in mutualism

Jones, E. I., Afkhami, M. E., Akçay, E., Bronstein, J. L., Bshary, R., Frederickson, M. E., Heath, K. D., Hoeksema, J. D., Ness, J. H., Pankey, M. S., Porter, S. S., Sachs, J. L., Scharnagl, K. & Friesen, M. L., Nov 2015, In : Ecology Letters. 18, 11, p. 1270-1284 15 p.

Research output: Contribution to journalReview article

Diagnosing oxidative stress in bacteria: not as easy as you might think

Imlay, J. A., Apr 1 2015, In : Current Opinion in Microbiology. 24, p. 124-131 8 p.

Research output: Contribution to journalReview article

Minimum Information about a Biosynthetic Gene cluster

Medema, M. H., Kottmann, R., Yilmaz, P., Cummings, M., Biggins, J. B., Blin, K., De Bruijn, I., Chooi, Y. H., Claesen, J., Coates, R. C., Cruz-Morales, P., Duddela, S., Düsterhus, S., Edwards, D. J., Fewer, D. P., Garg, N., Geiger, C., Gomez-Escribano, J. P., Greule, A., Hadjithomas, M. & 134 others, Haines, A. S., Helfrich, E. J. N., Hillwig, M. L., Ishida, K., Jones, A. C., Jones, C. S., Jungmann, K., Kegler, C., Kim, H. U., Kötter, P., Krug, D., Masschelein, J., Melnik, A. V., Mantovani, S. M., Monroe, E. A., Moore, M., Moss, N., Nützmann, H. W., Pan, G., Pati, A., Petras, D., Reen, F. J., Rosconi, F., Rui, Z., Tian, Z., Tobias, N. J., Tsunematsu, Y., Wiemann, P., Wyckoff, E., Yan, X., Yim, G., Yu, F., Xie, Y., Aigle, B., Apel, A. K., Balibar, C. J., Balskus, E. P., Barona-Gómez, F., Bechthold, A., Bode, H. B., Borriss, R., Brady, S. F., Brakhage, A. A., Caffrey, P., Cheng, Y. Q., Clardy, J., Cox, R. J., De Mot, R., Donadio, S., Donia, M. S., Van Der Donk, W. A., Dorrestein, P. C., Doyle, S., Driessen, A. J. M., Ehling-Schulz, M., Entian, K. D., Fischbach, M. A., Gerwick, L., Gerwick, W. H., Gross, H., Gust, B., Hertweck, C., Höfte, M., Jensen, S. E., Ju, J., Katz, L., Kaysser, L., Klassen, J. L., Keller, N. P., Kormanec, J., Kuipers, O. P., Kuzuyama, T., Kyrpides, N. C., Kwon, H. J., Lautru, S., Lavigne, R., Lee, C. Y., Linquan, B., Liu, X., Liu, W., Luzhetskyy, A., Mahmud, T., Mast, Y., Méndez, C., Metsä-Ketelä, M., Micklefield, J., Mitchell, D. A., Moore, B. S., Moreira, L. M., Müller, R., Neilan, B. A., Nett, M., Nielsen, J., O'Gara, F., Oikawa, H., Osbourn, A., Osburne, M. S., Ostash, B., Payne, S. M., Pernodet, J. L., Petricek, M., Piel, J., Ploux, O., Raaijmakers, J. M., Salas, J. A., Schmitt, E. K., Scott, B., Seipke, R. F., Shen, B., Sherman, D. H., Sivonen, K., Smanski, M. J., Sosio, M., Stegmann, E., Süssmuth, R. D., Tahlan, K., Thomas, C. M., Tang, Y., Truman, A. W., Viaud, M., Walton, J. D., Walsh, C. T., Weber, T., Van Wezel, G. P., Wilkinson, B., Willey, J. M., Wohlleben, W., Wright, G. D., Ziemert, N., Zhang, C., Zotchev, S. B., Breitling, R., Takano, E. & Glöckner, F. O., Aug 18 2015, In : Nature chemical biology. 11, 9, p. 625-631 7 p.

Research output: Contribution to journalReview article

Target activation by regulatory RNAs in bacteria

Papenfort, K. & Vanderpool, C. K., Jan 1 2015, In : FEMS Microbiology Reviews. 39, 3, p. 362-378 17 p.

Research output: Contribution to journalReview article

Transcription Factors That Defend Bacteria Against Reactive Oxygen Species

Imlay, J. A., Oct 15 2015, In : Annual review of microbiology. 69, 1, p. 93-108 16 p.

Research output: Contribution to journalReview article

Waterborne Viruses: A Barrier to Safe Drinking Water

Gall, A. M., Mariñas, B. J., Lu, Y. & Shisler, J. L., Jun 1 2015, In : PLoS pathogens. 11, 6, e1004867.

Research output: Contribution to journalReview article

2014

Climate refugia: Joint inference from fossil records, species distribution models and phylogeography

Gavin, D. G., Fitzpatrick, M. C., Gugger, P. F., Heath, K. D., Rodríguez-Sánchez, F., Dobrowski, S. Z., Hampe, A., Hu, F. S., Ashcroft, M. B., Bartlein, P. J., Blois, J. L., Carstens, B. C., Davis, E. B., de Lafontaine, G., Edwards, M. E., Fernandez, M., Henne, P. D., Herring, E. M., Holden, Z. A., Kong, W. S. & 8 others, Liu, J., Magri, D., Matzke, N. J., Mcglone, M. S., Saltré, F., Stigall, A. L., Tsai, Y. H. E. & Williams, J. W., Oct 2014, In : New Phytologist. 204, 1, p. 37-54 18 p.

Research output: Contribution to journalReview article

Diversity of the DNA replication system in the archaea domain

Sarmiento, F., Long, F., Cann, I. & Whitman, W. B., 2014, In : Archaea. 2014, 675946.

Research output: Contribution to journalReview article

Genomics-enabled discovery of phosphonate natural products and their biosynthetic pathways

Ju, K. S., Doroghazi, J. R. & Metcalf, W. W., Feb 1 2014, In : Journal of Industrial Microbiology and Biotechnology. 41, 2, p. 345-356 12 p.

Research output: Contribution to journalReview article

Lessons learned from the transformation of natural product discovery to a genome-driven endeavor

Deane, C. D. & Mitchell, D. A., Feb 1 2014, In : Journal of Industrial Microbiology and Biotechnology. 41, 2, p. 315-331 17 p.

Research output: Contribution to journalReview article

Multitarget drug discovery for tuberculosis and other infectious diseases

Li, K., Schurig-Briccio, L. A., Feng, X., Upadhyay, A., Pujari, V., Lechartier, B., Fontes, F. L., Yang, H., Rao, G., Zhu, W., Gulati, A., No, J. H., Cintra, G., Bogue, S., Liu, Y. L., Molohon, K., Orlean, P., Mitchell, D. A., Freitas-Junior, L., Ren, F. & 8 others, Sun, H., Jiang, T., Li, Y., Guo, R. T., Cole, S. T., Gennis, R. B., Crick, D. C. & Oldfield, E., Apr 10 2014, In : Journal of Medicinal Chemistry. 57, 7, p. 3126-3129 4 p.

Research output: Contribution to journalReview article

The chain-flipping mechanism of ACP (acyl carrier protein)-dependent enzymes appears universal

Cronan, J. E., Jun 1 2014, In : Biochemical Journal. 460, 2, p. 157-163 7 p.

Research output: Contribution to journalReview article

The mismetallation of enzymes during oxidative stress

Imlay, J. A., Oct 10 2014, In : Journal of Biological Chemistry. 289, 41, p. 28121-28128 8 p.

Research output: Contribution to journalReview article

Vitamin B12 as a modulator of gut microbial ecology

Degnan, P. H., Taga, M. E. & Goodman, A. L., Nov 4 2014, In : Cell Metabolism. 20, 5, p. 769-778 10 p.

Research output: Contribution to journalReview article

2013

Molluscum contagiosum virus: Persistence pays off

Randall, C. M. H. & Shisler, J. L., Jun 1 2013, In : Future Virology. 8, 6, p. 561-573 13 p.

Research output: Contribution to journalReview article

New developments in post-transcriptional regulation for operons by small RNAs

Balasubramanian, D. & Vanderpool, C. K., Mar 2013, In : RNA Biology. 10, 3, p. 337-341 5 p.

Research output: Contribution to journalReview article

Regulation of bacterial metabolism by small RNAs using diverse mechanisms

Bobrovskyy, M. & Vanderpool, C. K., Nov 2013, In : Annual Review of Genetics. 47, p. 209-232 24 p.

Research output: Contribution to journalReview article

Revealing nature's synthetic potential through the study of ribosomal natural product biosynthesis

Dunbar, K. L. & Mitchell, D. A., Mar 15 2013, In : ACS chemical biology. 8, 3, p. 473-487 15 p.

Research output: Contribution to journalReview article

Ribosomally synthesized and post-translationally modified peptide natural products: Overview and recommendations for a universal nomenclature

Arnison, P. G., Bibb, M. J., Bierbaum, G., Bowers, A. A., Bugni, T. S., Bulaj, G., Camarero, J. A., Campopiano, D. J., Challis, G. L., Clardy, J., Cotter, P. D., Craik, D. J., Dawson, M., Dittmann, E., Donadio, S., Dorrestein, P. C., Entian, K. D., Fischbach, M. A., Garavelli, J. S., Göransson, U. & 45 others, Gruber, C. W., Haft, D. H., Hemscheidt, T. K., Hertweck, C., Hill, C., Horswill, A. R., Jaspars, M., Kelly, W. L., Klinman, J. P., Kuipers, O. P., Link, A. J., Liu, W., Marahiel, M. A., Mitchell, D. A., Moll, G. N., Moore, B. S., Müller, R., Nair, S. K., Nes, I. F., Norris, G. E., Olivera, B. M., Onaka, H., Patchett, M. L., Piel, J., Reaney, M. J. T., Rebuffat, S., Ross, R. P., Sahl, H. G., Schmidt, E. W., Selsted, M. E., Severinov, K., Shen, B., Sivonen, K., Smith, L., Stein, T., Süssmuth, R. D., Tagg, J. R., Tang, G. L., Truman, A. W., Vederas, J. C., Walsh, C. T., Walton, J. D., Wenzel, S. C., Willey, J. M. & Van Der Donk, W. A., Jan 2013, In : Natural Product Reports. 30, 1, p. 108-160 53 p.

Research output: Contribution to journalReview article

The chromosome cycle of prokaryotes

Kuzminov, A., Oct 1 2013, In : Molecular Microbiology. 90, 2, p. 214-227 14 p.

Research output: Contribution to journalReview article

The molecular mechanisms and physiological consequences of oxidative stress: Lessons from a model bacterium

Imlay, J. A., Jul 1 2013, In : Nature Reviews Microbiology. 11, 7, p. 443-454 12 p.

Research output: Contribution to journalReview article

2012

Architecture and biosynthesis of the Saccharomyces cerevisiae cell wall

Orlean, P., Nov 1 2012, In : Genetics. 192, 3, p. 775-818 44 p.

Research output: Contribution to journalReview article

Open Access

Genetic manipulation of Methanosarcina spp.

Kohler, P. R. A. & Metcalf, W. W., Jan 1 2012, In : Frontiers in Microbiology. 3, JUL

Research output: Contribution to journalReview article

Why do bacteria use so many enzymes to scavenge hydrogen peroxide?

Mishra, S. & Imlay, J. A., Sep 15 2012, In : Archives of Biochemistry and Biophysics. 525, 2, p. 145-160 16 p.

Research output: Contribution to journalReview article

2011

Arf6-dependent intracellular trafficking of pasteurella multocida toxin and pH-dependent translocation from late endosomes

Repella, T. L., Ho, M., Chong, T. P. M., Bannai, Y. & Wilson, B. A., Mar 1 2011, In : Toxins. 3, 3, p. 218-241 24 p.

Research output: Contribution to journalReview article

Cellular and molecular action of the mitogenic protein-deamidating toxin from Pasteurella multocida

Wilson, B. A. & Ho, M., Dec 1 2011, In : FEBS Journal. 278, 23, p. 4616-4632 17 p.

Research output: Contribution to journalReview article

Closing in on complete pathways of biotin biosynthesis

Lin, S. & Cronan, J. E., Jun 1 2011, In : Molecular BioSystems. 7, 6, p. 1811-1821 11 p.

Research output: Contribution to journalReview article

Molecular call and response: The physiology of bacterial small RNAs

Richards, G. R. & Vanderpool, C. K., Oct 1 2011, In : Biochimica et Biophysica Acta - Gene Regulatory Mechanisms. 1809, 10, p. 525-531 7 p.

Research output: Contribution to journalReview article