Research Output

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2018

Carl R. Woese and the journey toward a universal tree of life

Fouke, B. W., Solai, K., Jones, S. L., Smith, E. M., Fouke, K. W., Fouke, K. E., Lutz, C. C., Sivaguru, M. & Fried, G. A., Dec 7 2018, Handbook of Astrobiology. CRC Press, p. 555-565 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Coupling fluxes, enzymes, and regulation in genome-scale metabolic models

Jensen, P. A., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 337-351 15 p. (Methods in Molecular Biology; vol. 1716).

Research output: Chapter in Book/Report/Conference proceedingChapter

Genetic techniques for studies of methyl-coenzyme M reductase from Methanosarcina acetivorans C2A

Nayak, D. D. & Metcalf, W. W., 2018, Methods in Enzymology. Armstrong, F. (ed.). Academic Press Inc., p. 325-347 23 p. (Methods in Enzymology; vol. 613).

Research output: Chapter in Book/Report/Conference proceedingChapter

Online, classroom and wilderness teaching environments: Reaching astrobiology learners of all ages around the world

Fouke, B. W., Fouke, K. W., Murphy, T., Cook, C. N., Michelson, B. F., Cross, J. L., Destefano, L., Fried, G. A., Solai, K., Malinowsky, J. W., Kelly, S. B., Lutz, C. C., Louer, E., Fenlon, C. C., Vasi, N. P., Gulley, A. M. & Sivaguru, M., Dec 7 2018, Handbook of Astrobiology. CRC Press, p. 27-44 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Population dynamics through the Lens of extreme environments

Whitaker, R. J. & Banfield, J. F., Nov 15 2018, Molecular Geomicrobiology. Walter de Gruyter GmbH, Vol. 59. p. 259-277 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

The search for a molecular-level understanding of the processes that Underpin the earth's biogeochemical cycles

Banfield, J. F., Tyson, G. W., Allen, E. E. & Whitaker, R. J., Nov 15 2018, Molecular Geomicrobiology. Walter de Gruyter GmbH, Vol. 59. p. 1-7 7 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2016

Competition for Manganese at the Host–Pathogen Interface

Kelliher, J. L. & Kehl-Fie, T., Jan 1 2016, Host-Microbe Interactions, 2016. San Francisco, B. & San Francisco, M. (eds.). Elsevier B.V., p. 1-25 25 p. (Progress in Molecular Biology and Translational Science; vol. 142).

Research output: Chapter in Book/Report/Conference proceedingChapter

Helicobacter pylori vacuolating toxin

Cover, T. L., Holland, R. L. & Blanke, S. R., Jan 1 2016, Helicobacter pylori Research: From Bench to Bedside. Springer Japan, p. 113-142 30 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Metal Sequestration: An Important Contribution of Antimicrobial Peptides to Nutritional Immunity

Damo, S. & Kehl-Fie, T. E., Jan 1 2016, Birkhauser Advances in Infectious Diseases. 9783319241975 ed. Springer Basel, p. 89-100 12 p. (Birkhauser Advances in Infectious Diseases; no. 9783319241975).

Research output: Chapter in Book/Report/Conference proceedingChapter

2015

Evolutionary aspects of toxin-producing bacteria

Wilson, B. A. & Ho, M., Jun 5 2015, The Comprehensive Sourcebook of Bacterial Protein Toxins. Elsevier Inc., p. 3-39 37 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Immune evasion strategies of molluscum contagiosum virus

Shisler, J. L., Jan 1 2015, Advances in Virus Research. Academic Press Inc., p. 201-252 52 p. (Advances in Virus Research; vol. 92).

Research output: Chapter in Book/Report/Conference proceedingChapter

Pasteurella multocida toxin

Wilson, B. A., Bergmann, S., Ho, M. & Orth, J. H. C., Jun 5 2015, The Comprehensive Sourcebook of Bacterial Protein Toxins. Elsevier Inc., p. 463-498 36 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

The biosecurity threat posed by biological toxins

Wilson, B. A. & Ho, M., Jan 1 2015, Biological Toxins and Bioterrorism. Springer Netherlands, p. 141-183 43 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2014

A sense of the earth

Fouke, B. W., Jan 1 2014, An Illinois Sampler: Teaching and Research on the Prairie. Winkelmes, M-A., Burton, A. & Mays, K. (eds.). University of Illinois Press, p. 1-7 7 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2013

CRISPR-Cas systems to probe ecological diversity and host-viral interactions

Held, N. L., Childs, L. M., Davison, M., Weitz, J. S., Whitaker, R. & Bhaya, D., Jan 1 2013, CRISPR-Cas Systems: RNA-Mediated Adaptive Immunity in Bacteria and Archaea. Springer Berlin Heidelberg, p. 221-250 30 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Gene and Operon Fusions

Slauch, J. M., Feb 27 2013, Brenner's Encyclopedia of Genetics: Second Edition. Elsevier Inc., p. 173-176 4 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Insights into Lignin Degradation and its Potential Industrial Applications

Abdel-Hamid, A. M., Solbiati, J. O. & Cann, I. K. O., Jan 1 2013, Advances in Applied Microbiology. Academic Press Inc., p. 1-28 28 p. (Advances in Applied Microbiology; vol. 82).

Research output: Chapter in Book/Report/Conference proceedingChapter

Parsimony

Olsen, G. J., Feb 27 2013, Brenner's Encyclopedia of Genetics: Second Edition. Elsevier Inc., p. 229-232 4 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Pyrimidine Dimers

Kuzminov, A., Feb 27 2013, Brenner's Encyclopedia of Genetics: Second Edition. Elsevier Inc., p. 538-539 2 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Recombination, Models of

Kuzminov, A., Feb 27 2013, Brenner's Encyclopedia of Genetics: Second Edition. Elsevier Inc., p. 99-103 5 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Recombinational Repair

Kuzminov, A., Feb 27 2013, Brenner's Encyclopedia of Genetics: Second Edition. Elsevier Inc., p. 104-108 5 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2012

Heterologous Gene Expression in Filamentous Fungi

Su, X., Schmitz, G., Zhang, M., Mackie, R. I. & Cann, I. K. O., 2012, Advances in Applied Microbiology. Academic Press Inc., p. 1-61 61 p. (Advances in Applied Microbiology; vol. 81).

Research output: Chapter in Book/Report/Conference proceedingChapter

Pasteurella multocida toxin interaction with host cells: Entry and cellular effects

Wilson, B. A. & Ho, M., Nov 8 2012, Pasteurella multocida: Molecular Biology, Toxins and Infection. Aktories, K., Orth, J. & Adler, B. (eds.). p. 93-111 19 p. (Current Topics in Microbiology and Immunology; vol. 361).

Research output: Chapter in Book/Report/Conference proceedingChapter

2011

Genetic methods for Methanosarcina species

Buan, N., Kulkarni, G. & Metcalf, W., 2011, Methods in Enzymology. Academic Press Inc., p. 23-42 20 p. (Methods in Enzymology; vol. 494).

Research output: Chapter in Book/Report/Conference proceedingChapter

Oxidative and nitrosative stress defence systems in Escherichia Coli and pseudomonas aeruginosa: A model organism of study versus a human opportunistic pathogen

Imlay, J. A. & Hassett, D. J., Jun 27 2011, Advances in Molecular and Cellular Microbiology: Stress Response in Pathogenic Bacteria. CABI Publishing, p. 1-32 32 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Probing protein dynamics in vivo using backbone cyclization: Bacterial acyl carrier protein as a case study

Volkmann, G., Murphy, P. W., Rowland, E. E., Cronan, J. E. & Byers, D. M., Dec 23 2011, Methods in Protein Biochemistry. Walter de Gruyter GmbH and Co. KG, p. 271-293 23 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

The human vaginal microbiome

Wilson, B. A., Thomas, S. M. & Ho, M., Jan 1 2011, Metagenomics of the Human Body. Springer New York, p. 91-115 25 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2010

Statistical evaluation of bacterial 16S rRNA gene sequences in relation to travertine mineral precipitation and water chemistry at Mammoth Hot Springs, Yellowstone National Park, USA

Martín, H. G., Veysey, J., Bonheyo, G. T., Goldenfeld, N. & Fouke, B. W., Dec 1 2010, Geomicrobiology: Molecular and Environmental Perspective. Springer Netherlands, p. 239-249 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2009

Chapter 17 Bacterial Fatty Acid Synthesis and its Relationships with Polyketide Synthetic Pathways

Cronan, J. E. & Thomas, J., Apr 14 2009, Complex Enzymes in Microbial Natural Product Biosynthesis, Part B: Polyketides, Aminocoumarins and Carbohydrates. Hopwood, D. (ed.). B ed. p. 395-433 39 p. (Methods in Enzymology; vol. 459, no. B).

Research output: Chapter in Book/Report/Conference proceedingChapter

RNA modification subsystems in the SEED database

De Crécy-Lagard, V. & Olsen, G., Jan 1 2009, DNA and RNA Modification Enzymes: Structure, Mechanism, Function and Evolution. CRC Press, p. 624-628 5 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2008

Mannosyltransferases

Orlean, P., Apr 24 2008, Biosynthesis and Degradation of Glycoconjugates. Wiley-Blackwell, Vol. 3-4. p. 129-144 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2007

Effects of S-nitrosation of nitric oxide synthase

Mitchell, D. A., Michel, T. & Marletta, M. A., Jan 1 2007, Nitric Oxide. Elsevier, p. 151-179,456 (Advances in Experimental Biology; vol. 1).

Research output: Chapter in Book/Report/Conference proceedingChapter

2006

Evolutionary aspects of toxin-producing bacteria

Wilson, B. A. & Ho, M., Dec 1 2006, The Comprehensive Sourcebook of Bacterial Protein Toxins. Elsevier Inc., p. 25-43 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Pasteurella multocida toxin

Wilson, B. A. & Ho, M., Dec 1 2006, The Comprehensive Sourcebook of Bacterial Protein Toxins. Elsevier Inc., p. 430-447 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2005

Denaturing gradient gel electrophoresis

Kocherginskaya, S. A., Cann, I. & Mackie, R. I., Dec 1 2005, Methods in Gut Microbial Ecology for Ruminants. Springer, p. 119-128 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Persistence of Streptococcus uberis in bovine mammary epithelial cells

Almeida, R. A., Batcha, T. & Oliver, S. P., Dec 1 2005, Mastitis in Dairy Production: Current Knowledge and Future Solutions. Wageningen Academic Publishers, p. 137-142 6 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1996

Chapter 2 Lipid metabolism in prokaryotes

Rock, C. O., Jackowski, S. & Cronan, J. E., 1996, New Comprehensive Biochemistry. C ed. Elsevier, p. 35-74 40 p. (New Comprehensive Biochemistry; vol. 31, no. C).

Research output: Chapter in Book/Report/Conference proceedingChapter