Research Output 1870 2018

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2018

Bioinformatics for prohormone and neuropeptide discovery

Southey, B. R., Romanova, E. V., Rodriguez-Zas, S. L. & Sweedler, J. V. Jan 1 2018 Methods in Molecular Biology. Humana Press Inc., p. 71-96 26 p. (Methods in Molecular Biology; vol. 1719)

Research output: Chapter in Book/Report/Conference proceedingChapter

Computational Biology
Neuropeptides
Peptide Hormones
Post Translational Protein Processing
Proteomics

Non-targeted identification of d-amino acid-containing peptides through enzymatic screening, chiral amino acid analysis, and LC-MS

Tai, H. C., Checco, J. W. & Sweedler, J. V. Jan 1 2018 Methods in Molecular Biology. Humana Press Inc., p. 107-118 12 p. (Methods in Molecular Biology; vol. 1719)

Research output: Chapter in Book/Report/Conference proceedingChapter

Amino Acids
Peptides
Post Translational Protein Processing
Mass Spectrometry
2017

Electrokinetic Transport and Fluidic Manipulation in Three Dimensional Integrated Nanofluidic Networks

King, T. L., Jin, X., Nandigana, V. R., Aluru, N. & Bohn, P. W. Jan 1 2017 Nanofluidics, 2nd Edition. 41 ed. Royal Society of Chemistry, p. 37-75 39 p. (RSC Nanoscience and Nanotechnology; vol. 2017-January, no. 41)

Research output: Chapter in Book/Report/Conference proceedingChapter

Nanofluidics
fluidics
electrokinetics
Fluidics
manipulators

Exploring the Next Phase in Gallium Nitride Photonics: Cubic Phase Light Emitters Heterointegrated on Silicon

Bayram, C. & Liu, R. Dec 1 2017 Semiconductors and Semimetals. Academic Press Inc., p. 411-435 25 p. (Semiconductors and Semimetals; vol. 96)

Research output: Chapter in Book/Report/Conference proceedingChapter

Gallium nitride
gallium nitrides
Silicon
Photonics
emitters

Optical microscopy and spectroscopy for epigenetic modifications in single living cells

Cui, Y. & Irudayaraj, J. Jan 1 2017 Methods in Pharmacology and Toxicology. Humana Press Inc., p. 135-154 20 p. (Methods in Pharmacology and Toxicology)

Research output: Chapter in Book/Report/Conference proceedingChapter

Epigenomics
Microscopy
Spectrum Analysis
Optical Imaging
Physiological Phenomena

Surface treatment of metallic biomaterials in contact with blood to enhance hemocompatibility

Allain, J. P. & Echeverry-Rendón, M. Oct 31 2017 Hemocompatibility of Biomaterials for Clinical Applications: Blood-Biomaterials Interactions. Elsevier Inc., p. 279-326 48 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Ceramics
Biocompatible Materials
Polymers
Metals
Equipment and Supplies
2016

Free D-aspartate in nonmammalian animals: Detection, localization, metabolism, and function

Patel, A. V., Kawai, T., Rubakhin, S. S. & Sweedler, J. V. Jan 1 2016 D-Amino Acids: Physiology, Metabolism, and Application. Springer Japan, p. 173-197 25 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

D-Aspartic Acid
Metabolism
Animals
Amino Acids
Neurotransmitter Agents

Highly efficient SiRNA delivery mediated by cationic helical polypeptides and polypeptide-based nanosystems

Yin, L., Zheng, N. & Cheng, J. Jan 1 2016 Methods in Molecular Biology. Humana Press Inc., Vol. 1364, 1 p. (Methods in Molecular Biology; vol. 1364)

Research output: Chapter in Book/Report/Conference proceedingChapter

Small Interfering RNA
Peptides
RNA Interference
Oral Administration
Gene Expression

Microfluidics for Studying Pharmacodynamics of Antibiotics

Mohan, R., Desai, A. V., Sanpitakseree, C. & Kenis, P. J. A. Apr 29 2016 Micro- and Nanosystems for Biotechnology. Wiley, p. 177-202 26 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Microfluidics
Anti-Bacterial Agents
Microbial Sensitivity Tests
Prescriptions
Pharmacokinetics

Noninvasive optical imaging of stem cell differentiation in biomaterials using photonic crystal surfaces

Choi, J. S., Zhuo, Y., Cunningham, B. T. & Harley, B. A. C. Nov 14 2016 Monitoring and Evaluation of Biomaterials and their Performance In Vivo. Elsevier Inc., p. 195-207 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Optics and Photonics
Optical Imaging
Biocompatible Materials
Cell Differentiation
Stem Cells

Time-dependent outflow boundary conditions for blood flow in the arterial system

Kwack, J., Kang, S., Bhat, G. & Masud, A. Jan 1 2016 Modeling and Simulation in Science, Engineering and Technology. Springer Basel, p. 359-377 19 p. (Modeling and Simulation in Science, Engineering and Technology)

Research output: Chapter in Book/Report/Conference proceedingChapter

Blood Flow
Blood
Boundary conditions
Stabilized Finite Element Method
Geometry
2015

Activation of molecular oxygen in cytochromes P450

Denisov, I. G. & Sligar, S. G. Jan 1 2015 Cytochrome P450: Structure, Mechanism, and Biochemistry, Fourth Edition. Springer International Publishing, p. 69-109 41 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Molecular oxygen
Cytochrome P-450 Enzyme System
Chemical activation
Oxygen
Protonation

Biomaterial Scaffolds for Tendon Tissue Engineering

Hortensius, R., Mozdzen, L. & Harley, B. Jan 1 2015 Tendon Regeneration: Understanding Tissue Physiology and Development to Engineer Functional Substitutes. Elsevier Inc., p. 349-380 32 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biocompatible Materials
Tissue Engineering
Tendons
Cicatrix
Extracellular Matrix

Biophotonics for assessing breast cancer

Erickson-Bhatt, S. J. & Boppart, S. A. Jun 25 2015 Biophotonics for Medical Applications. Elsevier Inc., p. 175-214 40 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Imaging techniques
Optical tomography
Tumors
Infrared radiation
Mammography

Data analysis and signal postprocessing for optical coherence tomography

Ralston, T. S., Marks, D. L., Ahmad, A. & Boppart, S. A. Jan 1 2015 Optical Coherence Tomography: Technology and Applications, Second Edition. Springer International Publishing, p. 407-436 30 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Optical tomography
Optical Coherence Tomography
tomography
signal processing
Signal processing

Design and quality control for translating 3D-printed scaffolds

Hollister, S. J., Flanagan, C. L., Zopf, D. A., Morrison, R. J., Nasser, H., Wheeler, M. B. & Green, G. E. Aug 7 2015 Essentials of 3D Biofabrication and Translation. Elsevier Inc., p. 43-59 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Splints
Scaffolds
Quality Control
Quality control
Lasers

Development of microfluidic devices for the manipulation of neuronal synapses

Jain, A. & Gillette, M. U. Mar 10 2015 Microfluidic and Compartmentalized Platforms for Neurobiological Research. Springer New York, p. 127-137 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Lab-On-A-Chip Devices
synapse
Synapses
Microfluidics
Cues

Development of polyester-drug nanoconjugates for cancer targeting and treatment

Yin, Q., Tong, R., Wang, H. & Cheng, J. Jan 1 2015 Biodegradable Polymers. Volume 1: Advancement in Biodegradation Study and Applications. Nova Science Publishers, Inc., p. 239-261 23 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Nanoconjugates
Polyesters
Nanoparticles
Pharmaceutical Preparations
Medical nanotechnology

DSP technology and methods for OCT

Ali, M., Ahmad, A. & Boppart, S. A. Jan 1 2015 Optical Coherence Tomography: Technology and Applications, Second Edition. Springer International Publishing, p. 437-458 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Optical tomography
Optical Coherence Tomography
Digital signal processors
central processing units
Semiconductors

Interferometric synthetic aperture microscopy (ISAM)

Adie, S. G., Shemonski, N. D., Ralston, T. S., Carney, P. S. & Boppart, S. A. Jan 1 2015 Optical Coherence Tomography: Technology and Applications, Second Edition. Springer International Publishing, p. 965-1004 40 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Synthetic apertures
synthetic apertures
Microscopy
Microscopic examination
aberration

Intraoperative OCT in surgical oncology

South, F. A., Marjanovic, M. & Boppart, S. A. Jan 1 2015 Optical Coherence Tomography: Technology and Applications, Second Edition. Springer International Publishing, p. 2393-2412 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Oncology
Tumors
tumors
cancer
Tissue

Molecular optical coherence tomography contrast enhancement and imaging

Oldenburg, A. L., Applegate, B. E., Tucker-Schwartz, J. M., Skala, M. C., Kim, J. & Boppart, S. A. Jan 1 2015 Optical Coherence Tomography: Technology and Applications, Second Edition. Springer International Publishing, p. 1429-1454 26 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Optical tomography
Optical Coherence Tomography
Molecular imaging
Microscopy
Microscopic examination

Nanomaterials for diagnostic imaging of the brain

Qin, E. & Kong, H. Jul 23 2015 Biomedical Engineering: Frontier Research and Converging Technologies. Springer International Publishing, Vol. 9, p. 77-89 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Nanostructures
Diagnostic Imaging
Nanostructured materials
Brain
Imaging techniques

Nonlinear interferometric vibrational imaging (NIVI) with novel optical sources

Boppart, S. A., King, M. D., Liu, Y., Tu, H. & Gruebele, M. Jan 1 2015 Optical Coherence Tomography: Technology and Applications, Second Edition. Springer International Publishing, p. 1237-1256 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Molecular Imaging
Raman Spectrum Analysis
Optical Imaging
imaging techniques
Nanoparticles

Optical coherence elastography

Kennedy, B. F., Kennedy, K. M., Oldenburg, A. L., Adie, S. G., Boppart, S. A. & Sampson, D. D. Jan 1 2015 Optical Coherence Tomography: Technology and Applications, Second Edition. Springer International Publishing, p. 1007-1054 48 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Elasticity Imaging Techniques
Tissue
Mechanical properties
Optical tomography
mechanical properties

Optical coherence tomography in tissue engineering

Zhao, Y., Yang, Y., Wang, R. K. & Boppart, S. A. Jan 1 2015 Optical Coherence Tomography: Technology and Applications, Second Edition. Springer International Publishing, p. 1965-2001 37 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

tissue engineering
Optical tomography
Optical Coherence Tomography
Tissue Engineering
Tissue engineering

Wave-Particle duality: Quantum erasing the nature of reality: Or, perhaps, the reality of nature?

Kwiat, P. G. & Englert, B. G. Jan 1 2015 Quantum Paths: Festschrift in Honor of Berge Englert on his 60th Birthday. World Scientific Publishing Co., p. 99-122 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Nature
Wave-particle Duality
2014

Advances in Animal Biotechnology

Schook, L. B., Rund, L. A., Hu, W., Darfour-Oduro, K. A., Knapp, L. A., Rodrigues, F. M. & Schachtschneider, K. M. Jan 1 2014 Agriculture and Science. Elsevier, p. 1-16 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

disease resistance
biotechnology
animal
animal welfare
medicine

Brillouin optomechanics

Bahl, G. & Carmon, T. Jan 1 2014 Cavity Optomechanics: Nano- and Micromechanical Resonators Interacting with Light. Springer Berlin Heidelberg, p. 157-168 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

actuation
cooling
acoustics
photons
scattering

Increase of signal-to-noise ratio in weak value measurements

Byard, C., Graham, T., Danan, A., Vaidman, L., Jordan, A. N. & Kwiat, P. Jan 1 2014 Quantum Theory: A Two-Time Success Story: Yakir Aharonov Festschrift the Global Financial Crisis and the Indian Economy. Springer-Verlag Milan, p. 389-395 7 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

signal to noise ratios
shot noise
recycling
deflection
interferometers

Leveraging structure-based rational drug design and nanotechnology to destroy leukemic stem cells

Uckun, F. M., Cheng, J., Mao, C. & Qazi, S. Jan 1 2014 Stem Cells, Tissue Engineering and Regenerative Medicine. World Scientific Publishing Co., p. 449-464 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Slip forming
Nanotechnology
Drug Design
Stem cells
Stem Cells

Vapor-Liquid-Solid Growth of Semiconductor Nanowires

Redwing, J. M., Miao, X. & Li, X. Dec 17 2014 Handbook of Crystal Growth: Thin Films and Epitaxy: Second Edition. Elsevier Inc., Vol. 3, p. 399-439 41 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

nanowires
vapors
liquids
energy conversion
synthesis
2013

A web-based community for modeling and design of mems

Gilgunn, P. J., Clark, J. V., Aluru, N., Mukherjee, T. & Fedder, G. K. Feb 6 2013 System-level Modeling of MEMS. Wiley-VCH Verlag, Vol. 10, p. 501-517 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Schematic diagrams
Hierarchical systems
Thesauri
MEMS
Websites

Employing the biology of successful fracture repair to heal critical size bone defects

Cameron, J. A., Milner, D. J., Lee, J. S., Cheng, J., Fang, N. X. & Jasiuk, I. M. Apr 29 2013 New Perspectives in Regeneration. Vol. 367, p. 113-132 20 p. (Current Topics in Microbiology and Immunology; vol. 367)

Research output: Chapter in Book/Report/Conference proceedingChapter

Bone and Bones
Bone Regeneration
Blood Vessels
Osteogenesis
Extremities

Fourier transform light scattering of tissues

Kim, T., Sridharan, S. & Popescu, G. Jan 1 2013 Handbook of Coherent-Domain Optical Methods: Biomedical Diagnostics, Environmental Monitoring, and Materials Science:: Second Edition. Springer New York, Vol. 1-2, p. 259-290 32 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Fourier Analysis
Light scattering
Fourier transforms
Tissue
Light

High-aspect-ratio gold nanorods: Their synthesis and application to image cell-induced strain fields in collagen films

Chernak, D. J., Sisco, P. N., Goldsmith, E. C., Baxter, S. C. & Murphy, C. J. 2013 NanoBiotechnology Protocols. Vol. 1026, p. 1-20 20 p. (Methods in Molecular Biology; vol. 1026)

Research output: Chapter in Book/Report/Conference proceedingChapter

Nanotubes
Gold
Collagen
Light
Traction

Imaging and tracking of bone marrow-derived immune and stem cells

Zhao, Y., Bower, A. J., Graf, B. W., Boppart, M. D. & Boppart, S. A. Sep 4 2013 Imaging and Tracking Stem Cells: Methods and Protocols. p. 57-76 20 p. (Methods in Molecular Biology; vol. 1052)

Research output: Chapter in Book/Report/Conference proceedingChapter

Stem Cells
Bone Marrow
Microscopy
Bone Marrow Cells
Regeneration

In Vivo Synthesis of Tissues and Organs

Harley, B. A. C. & Yannas, I. V. Nov 2013 Principles of Tissue Engineering: Fourth Edition. Elsevier Inc., p. 325-355 31 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Regeneration
Tissue
Extracellular Matrix
Scaffolds
Wounds and Injuries

Nanodiscs in the studies of membrane-bound cytochrome P450 enzymes

Luthra, A., Gregory, M., Grinkova, Y. V., Denisov, I. G. & Sligar, S. G. 2013 Cytochrome P450 Protocols. Humana Press Inc., Vol. 987, p. 115-127 13 p. (Methods in Molecular Biology; vol. 987)

Research output: Chapter in Book/Report/Conference proceedingChapter

Cytochrome P-450 Enzyme System
NADPH-Ferrihemoprotein Reductase
Membranes
Cytochrome P-450 CYP3A
Lipid Bilayers

New approaches in microbial pathogen detection

Kahyaoglu, L. N. & Irudayaraj, J. Jul 1 2013 Advances in Microbial Food Safety. Elsevier Ltd, Vol. 1, p. 202-226 25 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

microbial detection
Pathogens
Viruses
viruses
Hepatitis E virus

New Mass Spectrometric Approaches for Uncovering Neuropeptides

Hou, X. & Sweedler, J. V. 2013 Handbook of Biologically Active Peptides. Elsevier Inc., p. 1749-1756 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Multilayer films
Neuropeptides

Numerical Solution of the Fokker-Planck Equation by Finite Difference and Finite Element Methods - A Comparative Study

Pichler, L., Masud, A. & Bergman, L. A. 2013 Computational Methods in Applied Sciences. Springer Netherland, Vol. 26, p. 69-85 17 p. (Computational Methods in Applied Sciences; vol. 26)

Research output: Chapter in Book/Report/Conference proceedingChapter

Fokker Planck equation
Fokker-Planck Equation
Comparative Study
Finite Difference
Finite Element Method

Pattern recognition applied to spectroscopy: Conventional methods and future directions

Craig, A. P., Franca, A. S. & Irudayaraj, J. Mar 1 2013 Pattern Recognition: Practices, Perspectives and Challenges. Nova Science Publishers, Inc., p. 1-45 45 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Pattern recognition
Spectroscopy
Linear regression
Principal component analysis
Support vector machines

Quantitative ultrasound history and successes

Ghoshal, G., Oelze, M. L. & O’brien, W. D. Jan 1 2013 Quantitative Ultrasound in Soft Tissues. Springer Netherlands, p. 21-42 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Ultrasonography
History
Equipment and Supplies
Diagnostic Imaging
Medicine

Secondary ion mass spectrometry imaging of biological membranes at high spatial resolution

Klitzing, H. A., Weber, P. K. & Kraft, M. L. 2013 Nanoimaging: Methods and Protocols. Vol. 950, p. 483-501 19 p. (Methods in Molecular Biology; vol. 950)

Research output: Chapter in Book/Report/Conference proceedingChapter

Secondary Ion Mass Spectrometry
Lipids
Membranes
Sphingolipids
Membrane Lipids

State of the art methods for estimating backscatter coefficients

Ghoshal, G., Mamou, J. & Oelze, M. L. Jan 1 2013 Quantitative Ultrasound in Soft Tissues. Springer Netherlands, p. 3-20 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Diagnostic Imaging
History
Therapeutics

Statistics of scatterer property estimates

Oelze, M. L. Jan 1 2013 Quantitative Ultrasound in Soft Tissues. Springer Netherlands, p. 43-70 28 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Sample Size
Ultrasonography

Synthesis of layered, graded bioscaffolds

Weisgerber, D. W., Caliari, S. R. & Harley, B. A. C. Jan 1 2013 Structural Interfaces and Attachments in Biology. Springer New York, Vol. 9781461433170, p. 351-371 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Collagen
Scaffolds
Mechanics
Ligaments
Tendons

Therapy monitoring and assessment using quantitative ultrasound

Oelze, M. L., Kemmerer, J. P., Ghoshal, G. & Vlad, R. M. Jan 1 2013 Quantitative Ultrasound in Soft Tissues. Springer Netherlands, p. 193-216 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Hot Temperature
Neoplasms
Radiotherapy
Therapeutics
Temperature

Thermoelectric properties of lithium

Andruczyk, D. & Ruzic, D. Dec 1 2013 Lithium: Technology, Performance and Safety. Nova Science Publishers, Inc., p. 255-276 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Lithium
Melting point
Thermoelectricity
Facings
Vapor pressure