Medical Information Science

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2019

A gap analysis of survivorship terminology: Knowledge resources versus literature usage

Blake, C., Kim, J., Mathur, M. & Aggarwal, A., Jan 1 2019, In : Proceedings of the Association for Information Science and Technology. 56, 1, p. 612-614 3 p.

Research output: Contribution to journalArticle

Open Access

Disparities in breast cancer subtypes among women in the lower Mississippi Delta Region states

Zahnd, W. E., Sherman, R. L., Klonoff-Cohen, H., McLafferty, S. L., Farner, S. & Rosenblatt, K. A., Jun 1 2019, In : Cancer Causes and Control. 30, 6, p. 591-601 11 p.

Research output: Contribution to journalArticle

Evaluating automated entity extraction with respect to drug and non-drug treatment strategies

Guo, J., Blake, C. & Guan, Y., Jun 2019, In : Journal of Biomedical Informatics. 94, 103177.

Research output: Contribution to journalArticle

Evaluating ontology coverage and internal structure to better align patients with clinical trials

Lee, J., Blake, C. & McInnes, B. T., Jan 1 2019, In : Proceedings of the Association for Information Science and Technology. 56, 1, p. 157-165 9 p.

Research output: Contribution to journalArticle

Repurposing: Another R to prioritize in data curation

Twidale, M., Blake, C., Souden, M., Stelmack, J. & Kim, J., Jan 1 2019, In : Proceedings of the Association for Information Science and Technology. 56, 1, p. 785-787 3 p.

Research output: Contribution to journalArticle

2018

Investigating the role of interleukin-1 beta and glutamate in inflammatory bowel disease and epilepsy using discovery browsing

Rindflesch, T. C., Blake, C. L., Cairelli, M. J., Fiszman, M., Zeiss, C. J. & Kilicoglu, H., Dec 27 2018, In : Journal of Biomedical Semantics. 9, 1, 25.

Research output: Contribution to journalArticle

2017

High-frame-rate full-vocal-tract 3D dynamic speech imaging

Fu, M., Barlaz, M. S., Holtrop, J. L., Perry, J. L., Kuehn, D. P., Shosted, R. K., Liang, Z. P. & Sutton, B. P., Apr 1 2017, In : Magnetic Resonance in Medicine. 77, 4, p. 1619-1629 11 p.

Research output: Contribution to journalArticle

Informatics support for basic research in biomedicine

Rindflesch, T. C., Blake, C. L., Fiszman, M., Kilicoglu, H., Rosemblat, G., Schneider, J. A. & Zeiss, C. J., Jul 1 2017, In : ILAR Journal. 58, 1, p. 80-89 10 p., ilx004.

Research output: Contribution to journalArticle

Leveraging syntax to better capture the semantics of elliptical coordinated compound noun phrases

Blake, C. L. & Rindflesch, T., Aug 2017, In : Journal of Biomedical Informatics. 72, p. 120-131 12 p.

Research output: Contribution to journalArticle

Predicting Pulmonary Function from Phone Sensors

Cheng, Q., Juen, J., Bellam, S., Fulara, N., Close, D., Silverstein, J. C. & Schatz, B., Nov 2017, In : Telemedicine and e-Health. 23, 11, p. 913-919 7 p.

Research output: Contribution to journalArticle

2016

Classification Models for Pulmonary Function using Motion Analysis from Phone Sensors

Cheng, Q., Juen, J., Bellam, S., Fulara, N., Close, D., Silverstein, J. C. & Schatz, B., Jan 1 2016, In : AMIA ... Annual Symposium proceedings. AMIA Symposium. 2016, p. 401-410 10 p.

Research output: Contribution to journalArticle

Improving Endpoint Detection to Support Automated Systematic Reviews

Lucic, A. & Blake, C. L., Jan 1 2016, In : AMIA ... Annual Symposium proceedings. AMIA Symposium. 2016, p. 1900-1909 10 p.

Research output: Contribution to journalArticle

Preparing a workforce to effectively reuse data

Lucic, A. & Blake, C. L., Jan 1 2016, In : Proceedings of the Association for Information Science and Technology. 53, 1, p. 1-10 10 p.

Research output: Contribution to journalArticle

2015

A Natural Walking Monitor for Pulmonary Patients Using Mobile Phones

Juen, J., Cheng, Q. & Schatz, B. R., Jul 1 2015, In : IEEE Journal of Biomedical and Health Informatics. 19, 4, p. 1399-1405 7 p., 7096915.

Research output: Contribution to journalArticle

A syntactic characterization of authorship style surrounding proper names

Lučić, A. & Blake, C. L., Apr 1 2015, In : Digital Scholarship in the Humanities. 30, 1, p. 53-70 18 p.

Research output: Contribution to journalArticle

Automatic endpoint detection to support the systematic review process

Blake, C. & Lucic, A., Aug 1 2015, In : Journal of Biomedical Informatics. 56, p. 42-56 15 p.

Research output: Contribution to journalArticle

High-resolution dynamic speech imaging with joint low-rank and sparsity constraints

Fu, M., Zhao, B., Carignan, C., Shosted, R. K., Perry, J. L., Kuehn, D. P., Liang, Z. P. & Sutton, B. P., May 1 2015, In : Magnetic Resonance in Medicine. 73, 5, p. 1820-1832 13 p.

Research output: Contribution to journalArticle

Online question answering practices to support healthcare data re-use

Blake, C., Souden, M., Anderson, C. L., Twidale, M. & Jenifer E., S., Jan 1 2015, In : Proceedings of the Association for Information Science and Technology. 52, 1, p. 1-4 4 p.

Research output: Contribution to journalArticle

2014

Exploring cultural differences in language usage: The case of negation

Stoytcheva, S., Cohen, D. & Blake, C., Jan 1 2014, In : Proceedings of the ASIST Annual Meeting. 51, 1

Research output: Contribution to journalArticle

Health monitors for chronic disease by gait analysis with mobile phones

Juen, J., Cheng, Q., Prieto-Centurion, V., Krishnan, J. A. & Schatz, B., Nov 1 2014, In : Telemedicine journal and e-health : the official journal of the American Telemedicine Association. 20, 11, p. 1035-1041 7 p.

Research output: Contribution to journalArticle

Information integration: A case study of air quality in Chicago and St Louis

Lee, J. & Blake, C., Jan 1 2014, In : Proceedings of the ASIST Annual Meeting. 51, 1

Research output: Contribution to journalArticle

Khintchine–Pollaczek formula for random walks whose steps have one geometric tail

Bauer, R. O., Jan 1 2014, In : Annals of Operations Research. 223, 1, p. 109-119 11 p.

Research output: Contribution to journalArticle

Parameter tuning: Exposing the gap between data curation and effective data analytics

Blake, C. & Gabb, H. A., Jan 1 2014, In : Proceedings of the ASIST Annual Meeting. 51, 1

Research output: Contribution to journalArticle

Security Concerns in Android mHealth Apps

He, D., Naveed, M., Gunter, C. A. & Nahrstedt, K., Jan 1 2014, In : AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. 2014, p. 645-654 10 p.

Research output: Contribution to journalArticle

2013

More IMPATIENT: A gridding-accelerated Toeplitz-based strategy for non-Cartesian high-resolution 3D MRI on GPUs

Gai, J., Obeid, N., Holtrop, J. L., Wu, X. L., Lam, F., Fu, M., Haldar, J. P., Hwu, W. M. W., Liang, Z. P. & Sutton, B. P., May 2013, In : Journal of Parallel and Distributed Computing. 73, 5, p. 686-697 12 p.

Research output: Contribution to journalArticle

2012

C. elegans PAT-9 is a nuclear zinc finger protein critical for the assembly of muscle attachments

Liu, Q., Jones, T. I., Bachmann, R. A., Meghpara, M., Rogowski, L., Williams, B. D. & Jones, P. L., May 22 2012, In : Cell and Bioscience. 2, 1, 18.

Research output: Contribution to journalArticle

Using bootstrapping to identify protein locations

Blake, C. & Zheng, W., Dec 1 2012, In : Proceedings of the ASIST Annual Meeting. 49, 1

Research output: Contribution to journalArticle

Utilizing Response Time Distributions for Item Selection in CAT

Fan, Z., Wang, C., Chang, H. & Douglas, J. A., Oct 1 2012, In : Journal of Educational and Behavioral Statistics. 37, 5, p. 655-670 16 p.

Research output: Contribution to journalArticle

2011

BeeSpace Navigator: Exploratory analysis of gene function using semantic indexing of biological literature

Sen Sarma, M., Arcoleo, D., Khetani, R. S., Chee, B., Ling, X., He, X., Jiang, J., Mei, Q., Zhai, C. & Schatz, B., Jul 1 2011, In : Nucleic acids research. 39, SUPPL. 2, p. W462-W469

Research output: Contribution to journalArticle

Behavior-specific changes in transcriptional modules lead to distinct and predictable neurogenomic states

Chandrasekaran, S., Ament, S. A., Eddy, J. A., Rodriguez-Zas, S. L., Schatz, B. R., Price, N. D. & Robinson, G. E., Nov 1 2011, In : Proceedings of the National Academy of Sciences of the United States of America. 108, 44, p. 18020-18025 6 p.

Research output: Contribution to journalArticle

Text mining

Blake, C., Dec 1 2011, In : Annual Review of Information Science and Technology. 45, p. 121-155 35 p.

Research output: Contribution to journalArticle

2010

A simple construction of Werner measure from chordal SLE 8/3

Bauer, R., Dec 1 2010, In : Illinois Journal of Mathematics. 54, 4, p. 1429-1449 21 p.

Research output: Contribution to journalArticle

Bootstrapping location relations from text

Zheng, W. & Blake, C., Nov 1 2010, In : Proceedings of the ASIST Annual Meeting. 47

Research output: Contribution to journalArticle

BSQA: Integrated text mining using entity relation semantics extracted from biological literature of insects

He, X., Li, Y., Khetani, R., Sanders, B., Lu, Y., Ling, X., Zhai, C. X. & Schatz, B., Jun 21 2010, In : Nucleic acids research. 38, SUPPL. 2, p. W175-W181 gkq544.

Research output: Contribution to journalArticle

Identifying overrepresented concepts in gene lists from literature: A statistical approach based on Poisson mixture model

He, X., Sarma, M. S., Ling, X., Chee, B., Zhai, C. & Schatz, B., May 20 2010, In : BMC bioinformatics. 11, 272.

Research output: Contribution to journalArticle

Toward Dietary Assessment via Mobile Phone Video Cameras

Chen, N., Lee, Y. Y. O., Rabb, M. & Schatz, B. R., Jan 1 2010, In : AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. 2010, p. 106-110 5 p.

Research output: Contribution to journalArticle

2009

Asymptotic probabilities for conformal restriction measures for an annulus

Bauer, R. O., Jan 15 2009, In : Journal of Mathematical Analysis and Applications. 349, 2, p. 469-474 6 p.

Research output: Contribution to journalArticle

2008

Accelerating advanced MRI reconstructions on GPUs

Stone, S. S., Haldar, J. P., Tsao, S. C., Hwu, W. M. W., Sutton, B. P. & Liang, Z. P., Oct 1 2008, In : Journal of Parallel and Distributed Computing. 68, 10, p. 1307-1318 12 p.

Research output: Contribution to journalArticle

Joint estimation of water/fat images and field inhomogeneity map

Hernando, D., Haldar, J. P., Sutton, B. P., Ma, J., Kellman, P. & Liang, Z. P., Mar 1 2008, In : Magnetic Resonance in Medicine. 59, 3, p. 571-580 10 p.

Research output: Contribution to journalArticle

On chordal and bilateral SLE in multiply connected domains

Bauer, R. O. & Friedrich, R. M., Feb 1 2008, In : Mathematische Zeitschrift. 258, 2, p. 241-265 25 p.

Research output: Contribution to journalArticle