Research Output

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2020

Polynomial-time statistical estimation of species trees under gene duplication and loss

Legried, B., Molloy, E. K., Warnow, T. & Roch, S., 2020, Research in Computational Molecular Biology - 24th Annual International Conference, RECOMB 2020, Proceedings. Schwartz, R. (ed.). Springer, p. 120-135 16 p. (Lecture Notes in Computer Science; vol. 12074 LNBI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Spectral algebra models of unstable vn-Periodic Homotopy Theory

Behrens, M. & Rezk, C., 2020, Bousfield Classes and Ohkawa’s Theorem, BouCla 2015. Ohsawa, T. & Minami, N. (eds.). Springer, p. 275-323 49 p. (Springer Proceedings in Mathematics and Statistics; vol. 309).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2019

An affordable and portable technology for real-time scheduling of appliances in smart homes

Raman, A., Sowers, R. & Sreenivas, R. S., Jan 1 2019, 4th North American IEOM Conference. IEOM 2019. IEOM Society, p. 788-800 13 p. (Proceedings of the International Conference on Industrial Engineering and Operations Management).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

An improved meet in the middle algorithm for graphs with unit costs

Sewell, E. C., Pavlik, J. A. & Jacobson, S. H., 2019, Proceedings of the 12th International Symposium on Combinatorial Search, SoCS 2019. Surynek, P. & Yeoh, W. (eds.). AAAI Press, p. 145-149 5 p. (Proceedings of the 12th International Symposium on Combinatorial Search, SoCS 2019).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Denoising Gravitational Waves with Enhanced Deep Recurrent Denoising Auto-encoders

Shen, H., George, D., Huerta, E. A. & Zhao, Z., May 2019, 2019 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2019 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 3237-3241 5 p. 8683061. (ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings; vol. 2019-May).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Directed Intersection Representations and the Information Content of Digraphs

Kostochka, A. V., Liu, X., Machado, R. & Milenkovic, O., Jul 2019, 2019 IEEE International Symposium on Information Theory, ISIT 2019 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 1477-1481 5 p. 8849253. (IEEE International Symposium on Information Theory - Proceedings; vol. 2019-July).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Entropy Estimates on Tensor Products of Banach Spaces and Applications to Low-Rank Recovery

Lee, K., Srinivasa, R. S., Junge, M. & Romberg, J., Jul 2019, 2019 13th International Conference on Sampling Theory and Applications, SampTA 2019. Institute of Electrical and Electronics Engineers Inc., 9030989. (2019 13th International Conference on Sampling Theory and Applications, SampTA 2019).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Exploring Characteristic Features in Gait Patterns for Predicting Multiple Sclerosis

Kaur, R., Menon, S., Zhang, X., Sowers, R. & Hernandez, M. E., Jul 2019, 2019 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2019. Institute of Electrical and Electronics Engineers Inc., p. 4217-4220 4 p. 8857604. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Geometric Invariants for Sparse Unknown View Tomography

Zehni, M., Huang, S., Dokmanic, I. & Zhao, Z., May 2019, 2019 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2019 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 5027-5031 5 p. 8682401. (ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings; vol. 2019-May).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Multi-frequency phase synchronization

Gao, T. & Zhao, Z., Jan 1 2019, 36th International Conference on Machine Learning, ICML 2019. International Machine Learning Society (IMLS), p. 3718-3727 10 p. (36th International Conference on Machine Learning, ICML 2019; vol. 2019-June).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Multi-frequency vector diffusion maps

Fan, Y. & Zhao, Z., Jan 1 2019, 36th International Conference on Machine Learning, ICML 2019. International Machine Learning Society (IMLS), p. 3279-3288 10 p. (36th International Conference on Machine Learning, ICML 2019; vol. 2019-June).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

New Divide-and-Conquer Techniques for Large-Scale Phylogenetic Estimation

Warnow, T., Jan 1 2019, Algorithms for Computational Biology - 6th International Conference, AlCoB 2019, Proceedings. Vega-Rodríguez, M. A., Holmes, I. & Martín-Vide, C. (eds.). Springer-Verlag Berlin Heidelberg, p. 3-21 19 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11488 LNBI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Parallel Hybrid Metaheuristics with Distributed Intensification and Diversification for Large-scale Optimization in Big Data Statistical Analysis

Cho, W. K. T. & Liu, Y. Y., Dec 2019, Proceedings - 2019 IEEE International Conference on Big Data, Big Data 2019. Baru, C., Huan, J., Khan, L., Hu, X. T., Ak, R., Tian, Y., Barga, R., Zaniolo, C., Lee, K. & Ye, Y. F. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 3312-3320 9 p. 9006045. (Proceedings - 2019 IEEE International Conference on Big Data, Big Data 2019).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Traction: Fast non-parametric improvement of estimated gene trees

Christensen, S., Molloy, E. K., Vachaspati, P. & Warnow, T., Sep 2019, 19th International Workshop on Algorithms in Bioinformatics, WABI 2019. Huber, K. T. & Gusfield, D. (eds.). Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, 4. (Leibniz International Proceedings in Informatics, LIPIcs; vol. 143).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Using INC Within Divide-and-Conquer Phylogeny Estimation

Le, T., Sy, A., Molloy, E. K., Zhang, Q. R., Rao, S. & Warnow, T., Jan 1 2019, Algorithms for Computational Biology - 6th International Conference, AlCoB 2019, Proceedings. Martín-Vide, C., Holmes, I. & Vega-Rodríguez, M. A. (eds.). Springer-Verlag Berlin Heidelberg, p. 167-178 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11488 LNBI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Using Virtual Reality to Examine the Correlation between Balance Function and Anxiety in Stance

Sun, R., Kaur, R., Ziegelman, L., Yang, S., Sowers, R. & Hernandez, M. E., Nov 2019, Proceedings - 2019 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2019. Yoo, I., Bi, J. & Hu, X. T. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1633-1640 8 p. 8983331. (Proceedings - 2019 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2019).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Using virtual reality to examine the neural and physiological anxiety-related responses to balance-demanding target-reaching leaning tasks

Kaur, R., Sun, R., Ziegelman, L., Sowers, R. & Hernandez, M. E., Oct 2019, 2019 IEEE-RAS 19th International Conference on Humanoid Robots, Humanoids 2019. IEEE Computer Society, p. 313-319 7 p. 9035020. (IEEE-RAS International Conference on Humanoid Robots; vol. 2019-October).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Using Virtual Reality to Examine the Neural and Physiological Responses to Height and Perturbations in Quiet Standing

Kaur, R., Sun, R., Ziegelman, L., Sowers, R. & Hernandez, M. E., Jul 2019, 2019 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2019. Institute of Electrical and Electronics Engineers Inc., p. 5233-5236 4 p. 8857647. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2018

Anderson and Gorenstein Duality

Greenlees, J. P. C. & Stojanoska, V., 2018, Geometric and Topological Aspects of the Representation Theory of Finite Groups - PIMS Summer School and Workshop, 2016. Iyengar, S. B., Pevtsova, J. & Carlson, J. F. (eds.). Springer New York LLC, p. 105-130 26 p. (Springer Proceedings in Mathematics and Statistics; vol. 242).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Are Profile Hidden Markov Models Identifiable?

Pattabiraman, S. & Warnow, T., Aug 15 2018, ACM-BCB 2018 - Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics. Association for Computing Machinery, Inc, p. 448-456 9 p. (ACM-BCB 2018 - Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Congestion barcodes: Exploring the topology of urban congestion using persistent homology

Wu, Y., Shindnes, G., Karve, V., Yager, D., Work, D., Chakraborty, A. & Sowers, R. B., Mar 14 2018, 2017 IEEE 20th International Conference on Intelligent Transportation Systems, ITSC 2017. Institute of Electrical and Electronics Engineers Inc., p. 1-6 6 p. (IEEE Conference on Intelligent Transportation Systems, Proceedings, ITSC; vol. 2018-March).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Diagonal asymptotics for symmetric rational functions via ACSV

Baryshnikov, Y., Melczer, S., Pemantle, R. & Straub, A., Jun 1 2018, 29th International Conference on Probabilistic, Combinatorial and Asymptotic Methods for the Analysis of Algorithms, AofA 2018. Ward, M. D. & Fill, J. A. (eds.). Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, 12. (Leibniz International Proceedings in Informatics, LIPIcs; vol. 110).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Integrable combinatorics

Francesco, P. D. I., 2018, Invited Lectures. Sirakov, B., de Souza, P. N. & Viana, M. (eds.). World Scientific Publishing Co. Pte Ltd, p. 2599-2617 19 p. (Proceedings of the International Congress of Mathematicians, ICM 2018; vol. 3).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Multi-Segment Reconstruction Using Invariant Features

Zehni, M., Do, M. N. & Zhao, Z., Sep 10 2018, 2018 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2018 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 4629-4633 5 p. 8461796. (ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings; vol. 2018-April).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

New absolute fast converging phylogeny estimation methods with improved scalability and accuracy

Zhang, Q., Rao, S. & Warnow, T., Aug 1 2018, 18th International Workshop on Algorithms in Bioinformatics, WABI 2018. Parida, L. & Ukkonen, E. (eds.). Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, 8. (Leibniz International Proceedings in Informatics, LIPIcs; vol. 113).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

NJMerge: A Generic technique for scaling phylogeny estimation methods and its application to species trees

Molloy, E. K. & Warnow, T., Jan 1 2018, Comparative Genomics - 16th International Conference, RECOMB-CG 2018, Proceedings. Ouangraoua, A. & Blanchette, M. (eds.). Springer-Verlag Berlin Heidelberg, p. 260-276 17 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11183 LNBI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

On numbers, germs, and transseries

Aschenbrenner, M., Van Den Dries, L. & Van Der Hoeven, J., 2018, Invited Lectures. Sirakov, B., de Souza, P. N. & Viana, M. (eds.). World Scientific Publishing Co. Pte Ltd, p. 19-42 24 p. (Proceedings of the International Congress of Mathematicians, ICM 2018; vol. 2).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

On the I/O Costs of Some Repair Schemes for Full-Length Reed-Solomon Codes

Dau, H., Duursma, I. & Chu, H., Aug 15 2018, 2018 IEEE International Symposium on Information Theory, ISIT 2018. Institute of Electrical and Electronics Engineers Inc., p. 1700-1704 5 p. 8437865. (IEEE International Symposium on Information Theory - Proceedings; vol. 2018-June).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

The method of hypergraph containers

Balogh, J., Morris, R. & Samotij, W., 2018, Invited Lectures. Sirakov, B., de Souza, P. N. & Viana, M. (eds.). World Scientific Publishing Co. Pte Ltd, p. 3077-3110 34 p. (Proceedings of the International Congress of Mathematicians, ICM 2018; vol. 4).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Transformed Spiked Covariance Completion for Time Series Estimation

Eng, B., Zhao, Z., Kamalabadi, F. & Waldrop, L., Sep 10 2018, 2018 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2018 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 4484-4488 5 p. 8461555. (ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings; vol. 2018-April).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Uncertainty Principle for Quantum Channels

Gao, L., Junge, M. & Laracuente, N., Aug 15 2018, 2018 IEEE International Symposium on Information Theory, ISIT 2018. Institute of Electrical and Electronics Engineers Inc., p. 996-1000 5 p. 8437730. (IEEE International Symposium on Information Theory - Proceedings; vol. 2018-June).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Virtual Reality, Visual Cliffs, and Movement Disorders

Kaur, R., Lin, X., Layton, A., Hernandez, M. & Sowers, R., Oct 26 2018, 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2018. Institute of Electrical and Electronics Engineers Inc., p. 81-84 4 p. 8512246. (Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS; vol. 2018-July).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2017

Balanced and sparse Tamo-Barg codes

Halbawi, W., Duursma, I., Dau, H. & Hassibi, B., Aug 9 2017, 2017 IEEE International Symposium on Information Theory, ISIT 2017. Institute of Electrical and Electronics Engineers Inc., p. 1018-1022 5 p. 8006682. (IEEE International Symposium on Information Theory - Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Enhancing searches for optimal trees using SIESTA

Vachaspati, P. & Warnow, T., Jan 1 2017, Comparative Genomics - 15th International Workshop, RECOMB CG 2017, Proceedings. Nakhleh, L. & Meidanis, J. (eds.). Springer-Verlag, p. 232-255 24 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10562 LNBI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Five decades of healthcare simulation

Brailsford, S. C., Carter, M. W. & Jacobson, S. H., Jun 28 2017, 2017 Winter Simulation Conference, WSC 2017. Chan, V. (ed.). Institute of Electrical and Electronics Engineers Inc., p. 365-384 20 p. (Proceedings - Winter Simulation Conference).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Gene tree parsimony for incomplete gene trees

Bayzid, M. S. & Warnow, T., Aug 1 2017, 17th International Workshop on Algorithms in Bioinformatics, WABI 2017. Reinert, K. & Schwartz, R. (eds.). Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, 2. (Leibniz International Proceedings in Informatics, LIPIcs; vol. 88).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Low bandwidth repair of the RS(10,4) Reed-Solomon code

Duursma, I. M. & Da, H., Aug 30 2017, 2017 Information Theory and Applications Workshop, ITA 2017. Institute of Electrical and Electronics Engineers Inc., 8023449

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Mahalanobis distance for class averaging of cryo-EM images

Bhamre, T., Zhao, Z. & Singer, A., Jun 15 2017, 2017 IEEE 14th International Symposium on Biomedical Imaging, ISBI 2017. IEEE Computer Society, p. 654-658 5 p. 7950605. (Proceedings - International Symposium on Biomedical Imaging).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Optimal completion of incomplete gene trees in polynomial time using OCTAL

Christensen, S., Molloy, E. K., Vachaspati, P. & Warnow, T., Aug 1 2017, 17th International Workshop on Algorithms in Bioinformatics, WABI 2017. Reinert, K. & Schwartz, R. (eds.). Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, 27. (Leibniz International Proceedings in Informatics, LIPIcs; vol. 88).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Persistent-homology-based detection of power system low-frequency oscillations using PMUs

Chen, Y., Chintakunta, H., Xie, L., Baryshnikov, Y. M. & Kumar, P. R., Apr 19 2017, 2016 IEEE Global Conference on Signal and Information Processing, GlobalSIP 2016 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 796-800 5 p. 7905952. (2016 IEEE Global Conference on Signal and Information Processing, GlobalSIP 2016 - Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Rank-metric codes with local recoverability

Kadhe, S., El Rouayheb, S., Duursma, I. & Sprintson, A., Feb 10 2017, 54th Annual Allerton Conference on Communication, Control, and Computing, Allerton 2016. Institute of Electrical and Electronics Engineers Inc., p. 1033-1040 8 p. 7852348. (54th Annual Allerton Conference on Communication, Control, and Computing, Allerton 2016).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Repairing reed-solomon codes with two erasures

Dau, H., Duursma, I. M., Kiah, H. M. & Milenkovic, O., Aug 9 2017, 2017 IEEE International Symposium on Information Theory, ISIT 2017. Institute of Electrical and Electronics Engineers Inc., p. 351-355 5 p. 8006548. (IEEE International Symposium on Information Theory - Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Sector-disk codes with three global parities

Li, X. & Duursma, I., Aug 9 2017, 2017 IEEE International Symposium on Information Theory, ISIT 2017. Institute of Electrical and Electronics Engineers Inc., p. 614-618 5 p. 8006601. (IEEE International Symposium on Information Theory - Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

The appearance of H.F. Baker and E.W. Hobson in “The man who knew infinity”

Berndt, B. C., Jan 1 2017, Analytic Number Theory, Modular Forms and q-Hypergeometric Series - In Honor of Krishna Alladi’s 60th Birthday, 2016. Andrews, G. E. & Garvan, F. (eds.). Springer New York LLC, p. 95-97 3 p. (Springer Proceedings in Mathematics and Statistics; vol. 221).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2016

A design of hybrid feedback stabilization on 1D coverage with topological perspectives

Baryshnikov, Y., Chen, C. & Wang, H., Jul 28 2016, 2016 American Control Conference, ACC 2016. Institute of Electrical and Electronics Engineers Inc., p. 5154-5160 7 p. 7526477. (Proceedings of the American Control Conference; vol. 2016-July).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

A parallel evolutionary algorithm for subset selection in causal inference models

Cho, W. K. T. & Liu, Y. Y., Jul 17 2016, Proceedings of XSEDE 2016: Diversity, Big Data, and Science at Scale. Association for Computing Machinery, a7. (ACM International Conference Proceeding Series; vol. 17-21-July-2016).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Cyclicity in multivariate time series and applications to functional MRI data

Baryshnikov, Y. & Schlafly, E., Dec 27 2016, 2016 IEEE 55th Conference on Decision and Control, CDC 2016. Institute of Electrical and Electronics Engineers Inc., p. 1625-1630 6 p. 7798498. (2016 IEEE 55th Conference on Decision and Control, CDC 2016).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

On almost Lyapunov functions for non-vanishing vector fields

Liu, S., Liberzon, D. & Zharnitsky, V., Dec 27 2016, 2016 IEEE 55th Conference on Decision and Control, CDC 2016. Institute of Electrical and Electronics Engineers Inc., p. 5557-5562 6 p. 7799123. (2016 IEEE 55th Conference on Decision and Control, CDC 2016).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Operator algebra approach to quantum capacities

Gao, L., Junge, M. & Laracuente, N., Aug 10 2016, Proceedings - ISIT 2016; 2016 IEEE International Symposium on Information Theory. Institute of Electrical and Electronics Engineers Inc., p. 1695-1699 5 p. 7541588. (IEEE International Symposium on Information Theory - Proceedings; vol. 2016-August).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Range-space based identification of parametric linear systems

Yarkony, E., Baryshnikov, Y. & Bresler, Y., Aug 1 2016, 2016 IEEE 12th Image, Video, and Multidimensional Signal Processing Workshop, IVMSP 2016. Institute of Electrical and Electronics Engineers Inc., 7528192. (2016 IEEE 12th Image, Video, and Multidimensional Signal Processing Workshop, IVMSP 2016).

Research output: Chapter in Book/Report/Conference proceedingConference contribution