Mathematics

Search results

• Counting essential surfaces in 3-manifolds

  Dunfield, N. M. (Creator), Harvard Dataverse, Jul 17 2020

  DOI: 10.7910/DVN/FZIHMB

  Dataset

• Data from Scalable Species Tree Inference with External Constraints

  Liu, B. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Nov 3 2021

  DOI: 10.13012/B2IDB-2566000_V1

  Dataset

• INDELible simulated datesets with sequence length heterogeneity

  Warnow, T. (Creator) & Park, M. (Creator), University of Illinois Urbana-Champaign, Apr 6 2023

  DOI: 10.13012/B2IDB-0900513_V1

  Dataset

• Data from: Phylogenomic species tree estimation in the presence of incomplete lineage sorting and horizontal gene transfer

  Davidson, R. (Creator), Vachaspati, P. (Creator), Mirarab, S. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Oct 22 2023

  DOI: 10.13012/B2IDB-6670066_V1

  Dataset

• Data for Rapid and Accurate Large-Scale Coestimation of Sequence Alignments and Phylogenetic Trees

  Liu, K. (Creator), Raghavan, S. (Creator), Nelesen, S. (Creator), Linder, C. R. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jun 19 2009

  DOI: 10.13012/B2IDB-5139418_V1

  Dataset

• PASTA For Proteins Data (BALiBASE)

  Collins, K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Apr 6 2018

  DOI: 10.13012/B2IDB-4074787_V1

  Dataset

• Data from: Accurate Large-scale Phylogeny-Aware Alignment using BAli-Phy

  Gupta, M. (Creator), Zaharias, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Apr 30 2021

  DOI: 10.13012/B2IDB-7863273_V1

  Dataset

• Temperate and chronic virus competition

  Rapti, Z. (Creator), University of Illinois Urbana-Champaign, Apr 22 2021

  DOI: 10.13012/B2IDB-0705058_V1

  Dataset

• Datasets for EMMA: A New Method for Computing Multiple Sequence Alignments given a Constraint Subset Alignment

  Shen, C. (Creator), Liu, B. (Creator), Williams, K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Aug 8 2022

  DOI: 10.13012/B2IDB-2567453_V1

  Dataset

• Data for SEPP: SATé-Enabled Phylogenetic Placement.

  Mirarab, S. (Creator), Ngyuen, N.-P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jul 1 2012

  DOI: 10.13012/B2IDB-9316702_V1

  Dataset

• Datasets from the study: Optimal completion of incomplete gene trees in polynomial time using OCTAL

  Christensen, S. (Creator), Molloy, E. K. (Creator), Vachaspati, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jun 15 2017

  DOI: 10.13012/B2IDB-8402610_V1

  Dataset

• Data from: TreeMerge: A new method for improving the scalability of species tree estimation methods

  Molloy, E. K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Mar 19 2019

  DOI: 10.13012/B2IDB-9570561_V1

  Dataset

• Twisted Alexander polynomials for hyperbolic knots: data and software

  Dunfield, N. M. (Creator), Friedl, S. (Creator) & Jackson, N. (Creator), Harvard Dataverse, Oct 31 2020

  DOI: 10.7910/DVN/OK6YGC

  Dataset

• Floer homology, group orderability, and taut foliations of hyperbolic 3-manifolds

  Dunfield, N. M. (Creator), Harvard Dataverse, Apr 8 2019

  DOI: 10.7910/DVN/LCYXPO

  Dataset

• Fragmentary Sequences for Variable-Sized RNAsim Datasets

  Warnow, T. (Creator) & Wedell, E. (Creator), University of Illinois Urbana-Champaign, Jun 16 2021

  DOI: 10.13012/B2IDB-8788479_V1

  Dataset

• Data from: Polynomial-Time Statistical Estimation of Species Trees under Gene Duplication and Loss

  Legried, B. (Creator), Molloy, E. K. (Creator), Warnow, T. (Creator) & Roch, S. (Creator), University of Illinois Urbana-Champaign, Jul 15 2020

  DOI: 10.13012/B2IDB-2626814_V3

  Dataset

• Additional datasets (RNASim10k) for EMMA: A New Method for Computing Multiple Sequence Alignments given a Constraint Subset Alignment

  Shen, C. (Creator), Liu, B. (Creator), Williams, K. P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Sep 13 2023

  DOI: 10.13012/B2IDB-4194451_V1

  Dataset

• HIPPI Dataset

  Nguyen, N.-P. (Creator), Nute, M. (Creator), Mirarab, S. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Aug 16 2016

  DOI: 10.13012/B2IDB-6795126_V1

  Dataset

• Data from: "Inferring Species Trees from Gene-Family with Duplication and Loss using Multi-Copy Gene-Family Tree Decomposition"

  Willson, J. (Creator), Roddur, M. S. (Creator), Baqiao, L. (Creator), Zaharias, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, May 21 2021

  DOI: 10.13012/B2IDB-4050038_V1

  Dataset

• Biological and Simulated datasets for testing the SCAMPP framework for phylogenetic placement methods

  Wedell, E. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Apr 29 2022

  DOI: 10.13012/B2IDB-9257957_V1

  Dataset

• Data For Well-Connected Communities In Real Networks.

  Park, M. (Creator), Tabatabaee, Y. (Creator), Warnow, T. (Creator) & Chacko, G. (Creator), University of Illinois Urbana-Champaign, Mar 16 2023

  DOI: 10.13012/B2IDB-0908742_V1

  Dataset

• Data from "Re-evaluating Deep Neural Networks for Phylogeny Estimation: The issue of taxon sampling"

  Zaharias, P. (Creator), Grosshauser, M. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Aug 24 2021

  DOI: 10.13012/B2IDB-8921156_V1

  Dataset

• Data from: Statistically consistent divide-and-conquer pipelines for phylogeny estimation using NJMerge

  Molloy, E. K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, May 16 2019

  DOI: 10.13012/B2IDB-0569467_V2

  Dataset

• Data from TRACTION: Fast non-parametric improvement of estimated gene trees

  Christensen, S. (Creator), Molloy, E. K. (Creator), Vachaspati, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jul 29 2019

  DOI: 10.13012/B2IDB-1747658_V1

  Dataset

• Data for Well-Connectedness and Community Detection

  Park, M. (Creator), Tabatabaee, Y. (Creator), Warnow, T. (Creator) & Chacko, G. (Creator), University of Illinois Urbana-Champaign, Jun 4 2024

  DOI: 10.13012/B2IDB-6271968_V1

  Dataset