Mathematics

Search results

• Data from "Re-evaluating Deep Neural Networks for Phylogeny Estimation: The issue of taxon sampling"

  Zaharias, P. (Creator), Grosshauser, M. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Aug 24 2021

  DOI: 10.13012/B2IDB-8921156_V1

  Dataset

• Seven ROSE datasets in high and low fragmentation conditions

  Shen, C. (Creator), Park, M. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Nov 19 2021

  DOI: 10.13012/B2IDB-6128941_V1

  Dataset

• INDELible simulated datesets with sequence length heterogeneity

  Warnow, T. (Creator) & Park, M. (Creator), University of Illinois Urbana-Champaign, Apr 6 2023

  DOI: 10.13012/B2IDB-0900513_V1

  Dataset

• Data For Well-Connected Communities In Real Networks.

  Park, M. (Creator), Tabatabaee, Y. (Creator), Warnow, T. (Creator) & Chacko, G. (Creator), University of Illinois Urbana-Champaign, Mar 16 2023

  DOI: 10.13012/B2IDB-0908742_V1

  Dataset

• Data from: Polynomial-Time Statistical Estimation of Species Trees under Gene Duplication and Loss

  Legried, B. (Creator), Molloy, E. K. (Creator), Warnow, T. (Creator) & Roch, S. (Creator), University of Illinois Urbana-Champaign, Jan 22 2020

  DOI: 10.13012/B2IDB-2626814_V2

  Dataset

• Data for Rapid and Accurate Large-Scale Coestimation of Sequence Alignments and Phylogenetic Trees

  Liu, K. (Creator), Raghavan, S. (Creator), Nelesen, S. (Creator), Linder, C. R. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jun 19 2009

  DOI: 10.13012/B2IDB-5139418_V1

  Dataset

• NJMerge: A generic technique for scaling phylogeny estimation methods and its application to species trees

  Molloy, E. K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jul 29 2018

  DOI: 10.13012/B2IDB-1424746_V1

  Dataset

• MAGUS+eHMMs: Improved Multiple Sequence Alignment Accuracy for Fragmentary Sequences

  Shen, C. (Creator), Zaharias, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jun 28 2021

  DOI: 10.13012/B2IDB-2419626_V1

  Dataset

• Data from: TreeMerge: A new method for improving the scalability of species tree estimation methods

  Molloy, E. K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Mar 19 2019

  DOI: 10.13012/B2IDB-9570561_V1

  Dataset

• TIPP3 Benchmark Data and Simulated Reads

  Shen, C. (Creator), Wedell, E. (Creator), Pop, M. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jan 27 2025

  DOI: 10.13012/B2IDB-5467027_V1

  Dataset

• Counting essential surfaces in 3-manifolds

  Dunfield, N. M. (Creator), Harvard Dataverse, Jul 17 2020

  DOI: 10.7910/DVN/FZIHMB

  Dataset

• Data from: Polynomial-Time Statistical Estimation of Species Trees under Gene Duplication and Loss

  Legried, B. (Creator), Molloy, E. K. (Creator), Warnow, T. (Creator) & Roch, S. (Creator), University of Illinois Urbana-Champaign, Jul 15 2020

  DOI: 10.13012/B2IDB-2626814_V3

  Dataset

• Datasets from the study: Optimal completion of incomplete gene trees in polynomial time using OCTAL

  Christensen, S. (Creator), Molloy, E. K. (Creator), Vachaspati, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jun 15 2017

  DOI: 10.13012/B2IDB-8402610_V1

  Dataset

• HIPPI Dataset

  Nguyen, N.-P. (Creator), Nute, M. (Creator), Mirarab, S. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Aug 16 2016

  DOI: 10.13012/B2IDB-6795126_V1

  Dataset

• Data from: Phylogenomic species tree estimation in the presence of incomplete lineage sorting and horizontal gene transfer

  Davidson, R. (Creator), Vachaspati, P. (Creator), Mirarab, S. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Oct 22 2023

  DOI: 10.13012/B2IDB-6670066_V1

  Dataset

• Data From: "Comparing Methods for Species Tree Estimation With Gene Duplication and Loss"

  Willson, J. (Creator), Roddur, M. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jan 23 2021

  DOI: 10.13012/B2IDB-2418574_V1

  Dataset

• Data from: "Inferring Species Trees from Gene-Family with Duplication and Loss using Multi-Copy Gene-Family Tree Decomposition"

  Willson, J. (Creator), Roddur, M. S. (Creator), Baqiao, L. (Creator), Zaharias, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, May 21 2021

  DOI: 10.13012/B2IDB-4050038_V1

  Dataset

• Disjoint Tree Mergers for Large-Scale Maximum LikelihoodTree Estimation

  Park, M. (Creator), Zaharias, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Apr 11 2021

  DOI: 10.13012/B2IDB-7008049_V1

  Dataset

• Data from Scalable Species Tree Inference with External Constraints

  Liu, B. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Nov 3 2021

  DOI: 10.13012/B2IDB-2566000_V1

  Dataset

• Code for "Phage-antibiotic synergy inhibited by temperate and chronic virus competition"

  Rapti, Z. (Creator) & Clifton, S. (Creator), University of Illinois Urbana-Champaign, Feb 8 2022

  DOI: 10.13012/B2IDB-9460305_V1

  Dataset

• Datasets for EMMA: A New Method for Computing Multiple Sequence Alignments given a Constraint Subset Alignment

  Shen, C. (Creator), Liu, B. (Creator), Williams, K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Aug 8 2022

  DOI: 10.13012/B2IDB-2567453_V1

  Dataset

• Data for 16S and 23S rRNA alignments

  Mirarab, S. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Sep 16 2017

  DOI: 10.13012/B2IDB-1614388_V1

  Dataset

• Control of bacterial infections via antibiotic-induced proviruses

  Rapti, Z. (Creator), University of Illinois Urbana-Champaign, Jul 4 2019

  DOI: 10.13012/B2IDB-9721455_V1

  Dataset

• Datasets from the study "OCTAL: Optimal Completion of Gene Trees in Polynomial Time"

  Christensen, S. (Creator), Molloy, E. K. (Creator), Vachaspati, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Feb 22 2018

  DOI: 10.13012/B2IDB-1616387_V1

  Dataset

• PASTA For Proteins Data (BALiBASE)

  Collins, K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Apr 6 2018

  DOI: 10.13012/B2IDB-4074787_V1

  Dataset