Institute for Sustainability, Energy, and Environment

Research Output 1971 2018

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Review article
2018

Alley cropping: Global patterns of species composition and function

Wolz, K. J. & DeLucia, E. H. Jan 15 2018 In : Agriculture, Ecosystems and Environment. 252, p. 61-68 8 p.

Research output: Contribution to journalReview article

alley cropping
species diversity
crop
crops
fodder

Biomass and biofuels in China: Toward bioenergy resource potentials and their impacts on the environment

Qin, Z., Zhuang, Q., Cai, X., He, Y., Huang, Y., Jiang, D., Lin, E., Liu, Y., Tang, Y. & Wang, M. Q. Feb 1 2018 In : Renewable and Sustainable Energy Reviews. 82, p. 2387-2400 14 p.

Research output: Contribution to journalReview article

Biofuels
Crops
Biomass
Ecosystems
Ethanol

Consensus, uncertainties and challenges for perennial bioenergy crops and land use

Whitaker, J., Field, J. L., Bernacchi, C. J., Cerri, C. E. P., Ceulemans, R., Davies, C. A., DeLucia, E. H., Donnison, I. S., McCalmont, J. P., Paustian, K., Rowe, R. L., Smith, P., Thornley, P. & McNamara, N. P. Mar 1 2018 In : GCB Bioenergy. 10, 3, p. 150-164 15 p.

Research output: Contribution to journalReview article

energy crops
bioenergy
Land use
Crops
Greenhouse gases

Trends in research on forestry decentralization policies

Lund, J. F., Rutt, R. L. & Ribot, J. Jun 1 2018 In : Current Opinion in Environmental Sustainability. 32, p. 17-22 6 p.

Research output: Contribution to journalReview article

decentralization
forestry
trend
policy studies
epistemology
2017

A conundrum for density functional theory: DFT studies may sometimes get the right results for the wrong reasons

Hammes-Schiffer, S. Jan 6 2017 In : Science. 355, 6320, p. 28-29 2 p.

Research output: Contribution to journalReview article

Quantum Theory
quantum mechanics
momentum transfer
functional role
molecular analysis

Advances in the development of aptamer drug conjugates for targeted drug delivery

Chen, K., Liu, B., Yu, B., Zhong, W., Lu, Y., Zhang, J., Liao, J., Liu, J., Pu, Y., Qiu, L., Zhang, L., Liu, H. & Tan, W. May 1 2017 In : Wiley Interdisciplinary Reviews: Nanomedicine and Nanobiotechnology. 9, 3, e1438

Research output: Contribution to journalReview article

Oligonucleotides
Biomarkers
Pharmaceutical Preparations
Medicine
Toxicity

Biosynthetic approach to modeling and understanding metalloproteins using unnatural amino acids

Yu, Y., Cui, C., Wang, J. & Lu, Y. Feb 1 2017 In : Science China Chemistry. 60, 2, p. 188-200 13 p.

Research output: Contribution to journalReview article

Metalloproteins
Amino Acids
Enzymes
Azurin
Ribonucleotide Reductases

Catalysts by design: The power of theory

Hammes-Schiffer, S. Jan 1 2017 In : Accounts of chemical research. 50, 3, p. 561-566 6 p.

Research output: Contribution to journalReview article

Catalysts
Electrocatalysts
Photocatalysts
Enzymes

DNAzyme sensors for detection of metal ions in the environment and imaging them in living cells

McGhee, C. E., Loh, K. Y. & Lu, Y. Jun 1 2017 In : Current Opinion in Biotechnology. 45, p. 191-201 11 p.

Research output: Contribution to journalReview article

Catalytic DNA
Metal ions
Metals
Cells
Ions

Functional carbon nanodots for multiscale imaging and therapy

Ostadhossein, F. & Pan, D. May 1 2017 In : Wiley Interdisciplinary Reviews: Nanomedicine and Nanobiotechnology. 9, 3, e1436

Research output: Contribution to journalReview article

Carbon
Imaging techniques
Drug Labeling
Nanostructures
Drug delivery

Potential of global croplands and bioenergy crops for climate change mitigation through deployment for enhanced weathering

Kantola, I. B., Masters, M. D., Beerling, D. J., Long, S. P. & DeLucia, E. H. Apr 1 2017 In : Biology Letters. 13, 4, 0714

Research output: Contribution to journalReview article

Climate Change
energy crops
weathering
Soil
climate change

Public finance in a nutshell: A Cobb Douglas teaching tool for general equilibrium tax incidence and excess burden

Fullerton, D. & Ta, C. L. Mar 1 2017 In : National Tax Journal. 70, 1, p. 155-170 16 p.

Research output: Contribution to journalReview article

General equilibrium
Cobb-Douglas
Excess burden
Tax incidence
Public finance

Recent advances in DNAzyme-based gene silencing

Fan, H., Zhang, X. & Lu, Y. May 1 2017 In : Science China Chemistry. 60, 5, p. 591-601 11 p.

Research output: Contribution to journalReview article

Catalytic DNA
Genes
RNA
Gene therapy
Phosphorylation

Rooting for cassava: insights into photosynthesis and associated physiology as a�route to improve yield potential

De Souza, A. P., Massenburg, L. N., Jaiswal, D., Cheng, S., Shekar, R. & Long, S. P. Jan 1 2017 In : New Phytologist. 213, 1, p. 50-65 16 p.

Research output: Contribution to journalReview article

Manihot
Photosynthesis
cassava
rooting
physiology

The "ok, molly" chemistry

Lu, Y. Jan 1 2017 In : Accounts of chemical research. 50, 3, p. 647-651 5 p.

Research output: Contribution to journalReview article

Education

Tuning the Ultrafast Dynamics of Photoinduced Proton-Coupled Electron Transfer in Energy Conversion Processes

Goyal, P. & Hammes-Schiffer, S. Feb 10 2017 In : ACS Energy Letters. 2, 2, p. 512-519 8 p.

Research output: Contribution to journalReview article

Energy conversion
Protons
Tuning
Electrons
Photoelectrochemical cells
2016

Biochemical and biophysical understanding of metal ion selectivity of DNAzymes

Hwang, K., Hosseinzadeh, P. & Lu, Y. Jan 1 2016 In : Inorganica Chimica Acta. 452, p. 12-24 13 p.

Research output: Contribution to journalReview article

Catalytic DNA
Metal ions
Structural properties
metal ions
selectivity

Contact-facilitated drug delivery with Sn2 lipase labile prodrugs optimize targeted lipid nanoparticle drug delivery

Pan, D., Pham, C. T. N., Weilbaecher, K. N., Tomasson, M. H., Wickline, S. A. & Lanza, G. M. Jan 1 2016 In : Wiley Interdisciplinary Reviews: Nanomedicine and Nanobiotechnology. 8, 1, p. 85-106 22 p.

Research output: Contribution to journalReview article

Medical nanotechnology
Phospholipids
Prodrugs
Lipases
Lipase

Design and engineering of artificial oxygen-activating metalloenzymes

Nastri, F., Chino, M., Maglio, O., Bhagi-Damodaran, A., Lu, Y. & Lombardi, A. Sep 21 2016 In : Chemical Society Reviews. 45, 18, p. 5020-5054 35 p.

Research output: Contribution to journalReview article

Oxygen
Enzymes
Metals
Proteins

Experimental and Computational Mechanistic Studies Guiding the Rational Design of Molecular Electrocatalysts for Production and Oxidation of Hydrogen

Raugei, S., Helm, M. L., Hammes-Schiffer, S., Appel, A. M., O'Hagan, M., Wiedner, E. S. & Bullock, R. M. Jan 19 2016 In : Inorganic Chemistry. 55, 2, p. 445-460 16 p.

Research output: Contribution to journalReview article

electrocatalysts
Electrocatalysts
Protons
Hydrogen
Oxidation

Fluorescent nanoprobes for sensing and imaging of metal ions: Recent advances and future perspectives

Zhang, J. J., Cheng, F. F., Li, J. J., Zhu, J. J. & Lu, Y. Jun 1 2016 In : Nano Today. 11, 3, p. 309-329 21 p.

Research output: Contribution to journalReview article

Nanoprobes
Nanostructures
Nanostructured materials
Metal ions
Quantum Dots

Hydrogenase Enzymes and Their Synthetic Models: The Role of Metal Hydrides

Schilter, D., Camara, J. M., Huynh, M. T., Hammes-Schiffer, S. & Rauchfuss, T. B. Aug 10 2016 In : Chemical reviews. 116, 15, p. 8693-8749 57 p.

Research output: Contribution to journalReview article

Hydrogenase
Hydrides
Metals
Enzymes
Bearings (structural)

Models of the Ni-L and Ni-SIa States of the [NiFe]-Hydrogenase Active Site

Chambers, G. M., Huynh, M. T., Li, Y., Hammes-Schiffer, S., Rauchfuss, T. B., Reijerse, E. & Lubitz, W. Jan 19 2016 In : Inorganic Chemistry. 55, 2, p. 419-431 13 p.

Research output: Contribution to journalReview article

International System of Units
Carbon Monoxide
methylidyne
enzymes
isomers

Plants in silico: Why, why now and what?-an integrative platform for plant systems biology research

Zhu, X. G., Lynch, J. P., Lebauer, D. S., Millar, A. J., Stitt, M. & Long, S. P. May 1 2016 In : Plant Cell and Environment. 39, 5, p. 1049-1057 9 p.

Research output: Contribution to journalReview article

Systems Biology
Computer Simulation
Biological Sciences
Research
Ecosystem

Recent developments of liposomes as nanocarriers for theranostic applications

Xing, H., Hwang, K. & Lu, Y. Jan 1 2016 In : Theranostics. 6, 9, p. 1336-1352 17 p.

Research output: Contribution to journalReview article

Liposomes
Lipid Bilayers
Therapeutics
Genetic Therapy
Immunotherapy

Using Biosynthetic Models of Heme-Copper Oxidase and Nitric Oxide Reductase in Myoglobin to Elucidate Structural Features Responsible for Enzymatic Activities

Bhagi-Damodaran, A., Petrik, I. & Lu, Y. Oct 1 2016 In : Israel Journal of Chemistry. 56, 9-10, p. 773-790 18 p.

Research output: Contribution to journalReview article

Myoglobin
Heme
Electrons
Nitrous Oxide
copper oxidase
2015

Nanomaterial-based biosensors using dual transducing elements for solution phase detection

Li, N., Su, X. & Lu, Y. Jan 1 2015 In : Analyst. 140, 9, p. 2916-2943 28 p.

Research output: Contribution to journalReview article

Nanostructures
Biosensing Techniques
transducer
Nanostructured materials
Biosensors

Redesigning photosynthesis to sustainably meet global food and bioenergy demand

Ort, D. R. , Merchant, S. S. , Alric, J. , Barkan, A. , Blankenship, R. E. , Bock, R. , Croce, R. , Hanson, M. R. , Hibberd, J. M. , Long, S. P. , Moore, T. A. , Moroney, J. , Niyogi, K. K. , Parry, M. A. J. , Peralta-Yahya, P. P. , Prince, R. C. , Redding, K. E. , Spalding, M. H. , Van Wijk, K. J. , Vermaas, W. F. J. & 5 others Von Caemmerer, S., Weber, A. P. M., Yeates, T. O., Yuan, J. S. & Zhu, X. G. Jul 14 2015 In : Proceedings of the National Academy of Sciences of the United States of America. 112, 28, p. 8529-8536 8 p.

Research output: Contribution to journalReview article

Photosynthesis
Synthetic Biology
Food
Biofuels
Population Growth
Crassulacean acid metabolism
agriculture
Acids
cells
economic sustainability

Waterborne Viruses: A Barrier to Safe Drinking Water

Gall, A. M., Mariñas, B. J., Lu, Y. & Shisler, J. L. Jan 1 2015 In : PLoS Pathogens. 11, 6, e1004867

Research output: Contribution to journalReview article

Drinking Water
Disease Outbreaks
Viruses
2014

A meta-analysis of soil organic matter response to soil management practices: An approach to evaluate conservation indicators

Ugarte, C. M., Kwon, H., Andrews, S. S. & Wander, M. M. Sep 1 2014 In : Journal of Soil and Water Conservation. 69, 5, p. 422-430 9 p.

Research output: Contribution to journalReview article

meta-analysis
soil management
soil organic carbon
soil organic matter
management practice

DNA as sensors and imaging agents for metal ions

Xiang, Y. & Lu, Y. Feb 17 2014 In : Inorganic Chemistry. 53, 4, p. 1925-1942 18 p.

Research output: Contribution to journalReview article

Metal ions
metal ions
deoxyribonucleic acid
Imaging techniques
DNA

Energy positive domestic wastewater treatment: The roles of anaerobic and phototrophic technologies

Shoener, B. D., Bradley, I. M., Cusick, R. D. & Guest, J. S. Jan 1 2014 In : Environmental Sciences: Processes and Impacts. 16, 6, p. 1204-1222 19 p.

Research output: Contribution to journalReview article

Waste Water
Wastewater treatment
Technology
energy
Bioelectric Energy Sources

Functional DNA nanomaterials for sensing and imaging in living cells

Torabi, S. F. & Lu, Y. Aug 1 2014 In : Current Opinion in Biotechnology. 28, p. 88-95 8 p.

Research output: Contribution to journalReview article

Nanostructures
Nanostructured materials
DNA
Cells
Imaging techniques

Functional tuning and expanding of myoglobin by rational protein design

Lin, Y., Wang, J. & Lu, Y. Jan 1 2014 In : Science China Chemistry. 57, 3, p. 346-355 10 p.

Research output: Contribution to journalReview article

Myoglobin
Metalloproteins
Tuning
Proteins
Nitrite Reductases

Hydrogen tunneling in enzymes and biomimetic models

Layfield, J. P. & Hammes-Schiffer, S. Apr 9 2014 In : Chemical Reviews. 114, 7, p. 3466-3494 29 p.

Research output: Contribution to journalReview article

Biomimetics
Hydrogen
Enzymes
Physical Phenomena
Hydrides

Metalloenzyme design and engineering through strategic modifications of native protein scaffolds

Petrik, I. D., Liu, J. & Lu, Y. Apr 1 2014 In : Current Opinion in Chemical Biology. 19, 1, p. 67-75 9 p.

Research output: Contribution to journalReview article

Scaffolds
Protein Engineering
Catalysis
Catalytic Domain
Proteins

Metalloproteins containing cytochrome, iron-sulfur, or copper redox centers

Liu, J., Chakraborty, S., Hosseinzadeh, P., Yu, Y., Tian, S., Petrik, I., Bhagi, A. & Lu, Y. Apr 23 2014 In : Chemical reviews. 114, 8, p. 4366-4369 4 p.

Research output: Contribution to journalReview article

Metalloproteins
Cytochromes
Sulfur
Copper
Iron

Permaculture for agroecology: Design, movement, practice, and worldview. A review

Ferguson, R. S. & Lovell, S. T. Jan 1 2014 In : Agronomy for Sustainable Development. 34, 2, p. 251-274 24 p.

Research output: Contribution to journalReview article

permaculture
agroecology
Water management
Agriculture
Sustainable development

Urban home food gardens in the Global North: Research traditions and future directions

Taylor, J. R. & Lovell, S. T. Jan 1 2014 In : Agriculture and Human Values. 31, 2, p. 285-305 21 p.

Research output: Contribution to journalReview article

gardens
foods
home gardens
community gardens
urban agriculture
2013

Altered dynamics of forest recovery under a changing climate

Anderson-Teixeira, K. J., Miller, A. D., Mohan, J. E., Hudiburg, T. W., Duval, B. D. & DeLucia, E. H. Jul 2013 In : Global Change Biology. 19, 7, p. 2001-2021 21 p.

Research output: Contribution to journalReview article

Carbon Monoxide
Recovery
Climate change
Ecosystems
climate

An emerging understanding of mechanisms governing insect herbivory under elevated CO2

Zavala, J. A., Nabity, P. D. & DeLucia, E. H. Jan 7 2013 In : Annual Review of Entomology. 58, p. 79-97 19 p.

Research output: Contribution to journalReview article

herbivory
herbivores
insect
insects
chemistry

CyberGIS software: A synthetic review and integration roadmap

Wang, S., Anselin, L., Bhaduri, B., Crosby, C., Goodchild, M. F., Liu, Y. & Nyerges, T. L. Nov 1 2013 In : International Journal of Geographical Information Science. 27, 11, p. 2122-2145 24 p.

Research output: Contribution to journalReview article

Geographic information systems
information system
software
spatial analysis
community

Life cycle assessment applied to wastewater treatment: State of the art

Corominas, L., Foley, J., Guest, J. S., Hospido, A., Larsen, H. F., Morera, S. & Shaw, A. Oct 1 2013 In : Water Research. 47, 15, p. 5480-5492 13 p.

Research output: Contribution to journalReview article

Wastewater treatment
Life cycle
life cycle
pollutant removal
paradigm shift

Toward cool C4 crops

Long, S. P. & Spence, A. K. Apr 2013 In : Annual Review of Plant Biology. 64, p. 701-722 22 p.

Research output: Contribution to journalReview article

Zea mays
Photosynthesis
crops
Climate
Nitrogen
Azurin
Copper
Amino Acids
Electrons
Proteins
2012

Accelerating yield potential in soybean: Potential targets for biotechnological improvement

Ainsworth, E. A., Yendrek, C. R., Skoneczka, J. A. & Long, S. P. Jan 2012 In : Plant, Cell and Environment. 35, 1, p. 38-52 15 p.

Research output: Contribution to journalReview article

Soybeans
soybeans
abortion (plants)
Carbon
carbon

DNA aptamer functionalized nanomaterials for intracellular analysis, cancer cell imaging and drug delivery

Xing, H., Wong, N. Y., Xiang, Y. & Lu, Y. Aug 1 2012 In : Current Opinion in Chemical Biology. 16, 3-4, p. 429-435 7 p.

Research output: Contribution to journalReview article

Slip forming
Intracellular Space
Nucleotide Aptamers
Drug Carriers
Molecular Imaging

Harvesting Carbon from Eastern US Forests: Opportunities and: Impacts of an Expanding Bioenergy Industry

Davis, S. C., Dietze, M., DeLucia, E., Field, C., Loarie, S., Hamburg, S. P., Parton, W., Potts, M., Ramage, B., Wang, D., Youngs, H. & Long, S. P. 2012 In : Forests. 3, 2, p. 370-397 28 p.

Research output: Contribution to journalReview article

bioenergy industry
bioenergy
abandoned land
carbon
industry

Measuring indirect land use change with biofuels: Implications for policy

Khanna, M. & Crago, C. L. Aug 2012 In : Annual Review of Resource Economics. 4, p. 161-184 24 p.

Research output: Contribution to journalReview article

Biofuels
Land use change
Influence factors
Price transmission
Land use