Institute for Sustainability, Energy, and Environment

Research Output 1987 2017

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Review article
2017

A conundrum for density functional theory: DFT studies may sometimes get the right results for the wrong reasons

Hammes-Schiffer, S. Jan 6 2017 In : Science. 355, 6320, p. 28-29 2 p.

Research output: Contribution to journalReview article

Advances in the development of aptamer drug conjugates for targeted drug delivery

Chen, K., Liu, B., Yu, B., Zhong, W., Lu, Y., Zhang, J., Liao, J., Liu, J., Pu, Y., Qiu, L., Zhang, L., Liu, H. & Tan, W. May 1 2017 In : Wiley Interdisciplinary Reviews: Nanomedicine and Nanobiotechnology. 9, 3, e1438

Research output: Contribution to journalReview article

Drug delivery
Starch Gel Electrophoresis
Oligonucleotides
Biomarkers
Medicine

Biosynthetic approach to modeling and understanding metalloproteins using unnatural amino acids

Yu, Y., Cui, C., Wang, J. & Lu, Y. Feb 1 2017 In : Science China Chemistry. 60, 2, p. 188-200 13 p.

Research output: Contribution to journalReview article

Anthralin
Afferent Loop Syndrome
Electrons

Catalysts by design: The power of theory

Hammes-Schiffer, S. 2017 In : Accounts of Chemical Research. 50, 3, p. 561-566 6 p.

Research output: Contribution to journalReview article

Enzymes
Afferent Loop Syndrome
Bile Pigments
Paraoxon
Gram-Positive Cocci

DNAzyme sensors for detection of metal ions in the environment and imaging them in living cells

McGhee, C. E., Loh, K. Y. & Lu, Y. Jun 1 2017 In : Current Opinion in Biotechnology. 45, p. 191-201 11 p.

Research output: Contribution to journalReview article

Catalytic DNA
Metals
Ions
Kernicterus
Metal ions

Functional carbon nanodots for multiscale imaging and therapy

Ostadhossein, F. & Pan, D. May 1 2017 In : Wiley Interdisciplinary Reviews: Nanomedicine and Nanobiotechnology. 9, 3, e1436

Research output: Contribution to journalReview article

Carbon
Imaging techniques
Adenofibroma
Drug Labeling
Nanostructures

Potential of global croplands and bioenergy crops for climate change mitigation through deployment for enhanced weathering

Kantola, I. B., Masters, M. D., Beerling, D. J., Long, S. P. & DeLucia, E. H. Apr 1 2017 In : Biology Letters. 13, 4, 0714

Research output: Contribution to journalReview article

weathering
Climate Change
Soil
Food
energy crops

Public finance in a nutshell: A Cobb Douglas teaching tool for general equilibrium tax incidence and excess burden

Fullerton, D. & Ta, C. L. Mar 1 2017 In : National Tax Journal. 70, 1, p. 155-170 16 p.

Research output: Contribution to journalReview article

Tax
Derivatives
Graduate students
General equilibrium
Revenue

Recent advances in DNAzyme-based gene silencing

Fan, H., Zhang, X. & Lu, Y. May 1 2017 In : Science China Chemistry. 60, 5, p. 591-601 11 p.

Research output: Contribution to journalReview article

Bibliography of Medicine
Cyclic AMP Receptor Protein
Fusobacterium
Inborn Errors Amino Acid Metabolism
Afferent Loop Syndrome

Rooting for cassava: insights into photosynthesis and associated physiology as a route to improve yield potential

De Souza, A. P., Massenburg, L. N., Jaiswal, D., Cheng, S., Shekar, R. & Long, S. P. Jan 1 2017 In : New Phytologist. 213, 1, p. 50-65 16 p.

Research output: Contribution to journalReview article

cassava
Manihot
Photosynthesis
photosynthetically active radiation
genetic improvement

The "ok, molly" chemistry

Lu, Y. 2017 In : Accounts of Chemical Research. 50, 3, p. 647-651 5 p.

Research output: Contribution to journalReview article

Bile Pigments
Poecilia
Education
Caprylates
2016

Biochemical and biophysical understanding of metal ion selectivity of DNAzymes

Hwang, K., Hosseinzadeh, P. & Lu, Y. 2016 In : Inorganica Chimica Acta. 452, p. 12-24 13 p.

Research output: Contribution to journalReview article

Kernicterus
Metal ions
metal ions
Caprylates
Structural properties

Contact-facilitated drug delivery with Sn2 lipase labile prodrugs optimize targeted lipid nanoparticle drug delivery

Pan, D., Pham, C. T. N., Weilbaecher, K. N., Tomasson, M. H., Wickline, S. A. & Lanza, G. M. Jan 1 2016 In : Wiley Interdisciplinary Reviews: Nanomedicine and Nanobiotechnology. 8, 1, p. 85-106 22 p.

Research output: Contribution to journalReview article

Prodrugs
Lipase
Nanoparticles
Lipids
Drug delivery

Design and engineering of artificial oxygen-activating metalloenzymes

Nastri, F., Chino, M., Maglio, O., Bhagi-Damodaran, A., Lu, Y. & Lombardi, A. Sep 21 2016 In : Chemical Society Reviews. 45, 18, p. 5020-5054 35 p.

Research output: Contribution to journalReview article

Autistic Disorder

Experimental and Computational Mechanistic Studies Guiding the Rational Design of Molecular Electrocatalysts for Production and Oxidation of Hydrogen

Raugei, S., Helm, M. L., Hammes-Schiffer, S., Appel, A. M., O'Hagan, M., Wiedner, E. S. & Bullock, R. M. Jan 19 2016 In : Inorganic Chemistry. 55, 2, p. 445-460 16 p.

Research output: Contribution to journalReview article

protons
energy
Avian Leukosis
Afferent Loop Syndrome
amines

Fluorescent nanoprobes for sensing and imaging of metal ions: Recent advances and future perspectives

Zhang, J. J., Cheng, F. F., Li, J. J., Zhu, J. J. & Lu, Y. Jun 1 2016 In : Nano Today. 11, 3, p. 309-329 21 p.

Research output: Contribution to journalReview article

Nanoprobes
Nanostructured materials
Metal ions
Imaging techniques
Adenofibroma

Hydrogenase Enzymes and Their Synthetic Models: The Role of Metal Hydrides

Schilter, D., Camara, J. M., Huynh, M. T., Hammes-Schiffer, S. & Rauchfuss, T. B. Aug 10 2016 In : Chemical Reviews. 116, 15, p. 8693-8749 57 p.

Research output: Contribution to journalReview article

Latvia
Anthralin
Hydrogen
Afferent Loop Syndrome
Chronic Mucocutaneous Candidiasis

Mid-infrared concentration-modulated noise-immune cavity-enhanced optical heterodyne molecular spectroscopy of a continuous supersonic expansion discharge source

Talicska, C. N., Porambo, M. W., Perry, A. J. & McCall, B. J. Jun 1 2016 In : Review of Scientific Instruments. 87, 6, 063111

Research output: Contribution to journalReview article

Molecular spectroscopy
molecular spectroscopy
cavities
expansion
Ions

Models of the Ni-L and Ni-SIa States of the [NiFe]-Hydrogenase Active Site

Chambers, G. M., Huynh, M. T., Li, Y., Hammes-Schiffer, S., Rauchfuss, T. B., Reijerse, E. & Lubitz, W. Jan 19 2016 In : Inorganic Chemistry. 55, 2, p. 419-431 13 p.

Research output: Contribution to journalReview article

methylidyne
Anthralin
Community Psychiatry
International System of Units
enzymes

Plants in silico: Why, why now and what?-an integrative platform for plant systems biology research

Zhu, X. G., Lynch, J. P., Lebauer, D. S., Millar, A. J., Stitt, M. & Long, S. P. May 1 2016 In : Plant Cell and Environment. 39, 5, p. 1049-1057 9 p.

Research output: Contribution to journalReview article

Systems Biology
Computer Simulation
Ecosystem
ecosystems
genes

Recent developments of liposomes as nanocarriers for theranostic applications

Xing, H., Hwang, K. & Lu, Y. 2016 In : Theranostics. 6, 9, p. 1336-1352 17 p.

Research output: Contribution to journalReview article

Liposomes
Lipid Bilayers
Heavy Metals
Genetic Therapy
Immunotherapy

Using Biosynthetic Models of Heme-Copper Oxidase and Nitric Oxide Reductase in Myoglobin to Elucidate Structural Features Responsible for Enzymatic Activities

Bhagi-Damodaran, A., Petrik, I. & Lu, Y. Oct 1 2016 In : Israel Journal of Chemistry. 56, 9-10, p. 773-790 18 p.

Research output: Contribution to journalReview article

Anthralin
Electrons
Leghemoglobin
Autistic Disorder
Tuning
2015

Nanomaterial-based biosensors using dual transducing elements for solution phase detection

Li, N., Su, X. & Lu, Y. May 7 2015 In : Analyst. 140, 9, p. 2916-2943 28 p.

Research output: Contribution to journalReview article

Nanostructured materials
Nanostructures
Biosensing Techniques
Biological Therapy
transducer

Perspectives on electrostatics and conformational motions in enzyme catalysis

Hanoian, P., Liu, C. T., Hammes-Schiffer, S. & Benkovic, S. Feb 17 2015 In : Accounts of Chemical Research. 48, 2, p. 482-489 8 p.

Research output: Contribution to journalReview article

Static Electricity
Catalysis
Enzymes
Electrostatics
Tetrahydrofolate Dehydrogenase

Redesigning photosynthesis to sustainably meet global food and bioenergy demand

Ort, D. R. , Merchant, S. S. , Alric, J. , Barkan, A. , Blankenship, R. E. , Bock, R. , Croce, R. , Hanson, M. R. , Hibberd, J. M. , Long, S. P. , Moore, T. A. , Moroney, J. , Niyogi, K. K. , Parry, M. A. J. , Peralta-Yahya, P. P. , Prince, R. C. , Redding, K. E. , Spalding, M. H. , Van Wijk, K. J. , Vermaas, W. F. J. & 5 others Von Caemmerer, S., Weber, A. P. M., Yeates, T. O., Yuan, J. S. & Zhu, X. G. Jul 14 2015 In : Proceedings of the National Academy of Sciences of the United States of America. 112, 28, p. 8529-8536 8 p.

Research output: Contribution to journalReview article

Photosynthesis
Food
Synthetic Biology
Biofuels
Population Growth

Toward systems-level analysis of agricultural production from crassulacean acid metabolism (CAM): Scaling from cell to commercial production

Davis, S. C., Ming, R., Lebauer, D. S. & Long, S. P. Oct 1 2015 In : New Phytologist. 208, 1, p. 66-72 7 p.

Research output: Contribution to journalReview article

Crassulacean acid metabolism
Acids
agriculture
Biofuels
Droughts

Waterborne Viruses: A Barrier to Safe Drinking Water

Gall, A. M., Mariñas, B. J., Lu, Y. & Shisler, J. L. Jun 1 2015 In : PLoS Pathogens. 11, 6, e1004867

Research output: Contribution to journalReview article

Viruses
2014

A meta-analysis of soil organic matter response to soil management practices: An approach to evaluate conservation indicators

Ugarte, C. M., Kwon, H., Andrews, S. S. & Wander, M. M. Sep 1 2014 In : Journal of Soil and Water Conservation. 69, 5, p. 422-430 9 p.

Research output: Contribution to journalReview article

soil organic carbon
meta-analysis
no-tillage
soil
organic carbon

DNA as sensors and imaging agents for metal ions

Xiang, Y. & Lu, Y. Feb 17 2014 In : Inorganic Chemistry. 53, 4, p. 1925-1942 18 p.

Research output: Contribution to journalReview article

Kernicterus
metal ions
Artificial Organs
deoxyribonucleic acid
sensors

Energy positive domestic wastewater treatment: The roles of anaerobic and phototrophic technologies

Shoener, B. D., Bradley, I. M., Cusick, R. D. & Guest, J. S. 2014 In : Environmental Sciences: Processes and Impacts. 16, 6, p. 1204-1222 19 p.

Research output: Contribution to journalReview article

Acyclic Acids
Waste Water
Technology
energy
wastewater

Functional DNA nanomaterials for sensing and imaging in living cells

Torabi, S. F. & Lu, Y. Aug 2014 In : Current Opinion in Biotechnology. 28, p. 88-95 8 p.

Research output: Contribution to journalReview article

Nanostructures
DNA
Nanoparticles
Imaging techniques
Adenofibroma

Functional tuning and expanding of myoglobin by rational protein design

Lin, Y., Wang, J. & Lu, Y. 2014 In : Science China Chemistry. 57, 3, p. 346-355 10 p.

Research output: Contribution to journalReview article

Tuning
Scaffolds

Hydrogen tunneling in enzymes and biomimetic models

Layfield, J. P. & Hammes-Schiffer, S. Apr 9 2014 In : Chemical Reviews. 114, 7, p. 3466-3494 29 p.

Research output: Contribution to journalReview article

Biomimetics
Hydrogen
Enzymes
Autoantibodies
Physical Phenomena

Metalloenzyme design and engineering through strategic modifications of native protein scaffolds

Petrik, I. D., Liu, J. & Lu, Y. Apr 2014 In : Current Opinion in Chemical Biology. 19, 1, p. 67-75 9 p.

Research output: Contribution to journalReview article

Proteins
Protein Engineering
Catalysis
Catalytic Domain
Amino Acids

Metalloproteins containing cytochrome, iron-sulfur, or copper redox centers

Liu, J., Chakraborty, S., Hosseinzadeh, P., Yu, Y., Tian, S., Petrik, I., Bhagi, A. & Lu, Y. Apr 23 2014 In : Chemical Reviews. 114, 8, p. 4366-4369 4 p.

Research output: Contribution to journalReview article

Metalloproteins
Cytochromes
Sulfur
Oxidation-Reduction
Copper

Permaculture for agroecology: Design, movement, practice, and worldview. A review

Ferguson, R. S. & Lovell, S. T. 2014 In : Agronomy for Sustainable Development. 34, 2, p. 251-274 24 p.

Research output: Contribution to journalReview article

permaculture
agroecology
systems engineering
Water management
Agriculture

Urban home food gardens in the Global North: Research traditions and future directions

Taylor, J. R. & Lovell, S. T. 2014 In : Agriculture and Human Values. 31, 2, p. 285-305 21 p.

Research output: Contribution to journalReview article

gardens
home gardens
foods
community gardens
urban agriculture
2013

Altered dynamics of forest recovery under a changing climate

Anderson-Teixeira, K. J., Miller, A. D., Mohan, J. E., Hudiburg, T. W., Duval, B. D. & DeLucia, E. H. Jul 2013 In : Global Change Biology. 19, 7, p. 2001-2021 21 p.

Research output: Contribution to journalReview article

Muscle Contraction
Spontaneous Fractures
Autobiography
Androgen Antagonists
climate

An emerging understanding of mechanisms governing insect herbivory under elevated CO2

Zavala, J. A., Nabity, P. D. & DeLucia, E. H. Jan 7 2013 In : Annual Review of Entomology. 58, p. 79-97 19 p.

Research output: Contribution to journalReview article

insects
insect
chemistry
plant hormones
herbivores

Cosmic-ray astrochemistry

Indriolo, N. & McCall, B. J. Oct 17 2013 In : Chemical Society Reviews. 42, 19, p. 7763-7773 11 p.

Research output: Contribution to journalReview article

Cosmic rays
Bile Pigments
Ionization
Gamma rays
Hot Temperature

CyberGIS software: A synthetic review and integration roadmap

Wang, S., Anselin, L., Bhaduri, B., Crosby, C., Goodchild, M. F., Liu, Y. & Nyerges, T. L. Nov 2013 In : International Journal of Geographical Information Science. 27, 11, p. 2122-2145 24 p.

Research output: Contribution to journalReview article

integration
software
Geographic information systems
information system
research

Life cycle assessment applied to wastewater treatment: State of the art

Corominas, L., Foley, J., Guest, J. S., Hospido, A., Larsen, H. F., Morera, S. & Shaw, A. Oct 1 2013 In : Water Research. 47, 15, p. 5480-5492 13 p.

Research output: Contribution to journalReview article

life cycle
Life cycle
wastewater
Wastewater treatment
methodology

Toward cool C4 crops

Long, S. P. & Spence, A. K. Apr 2013 In : Annual Review of Plant Biology. 64, p. 701-722 22 p.

Research output: Contribution to journalReview article

crops
Zea mays
Photosynthesis
Climate
Nitrogen
Electrons
Inorganic Chemistry
Bile Pigments
Fusobacterium
Graduate Medical Education
2012

Accelerating yield potential in soybean: Potential targets for biotechnological improvement

Ainsworth, E. A., Yendrek, C. R., Skoneczka, J. A. & Long, S. P. Jan 2012 In : Plant, Cell and Environment. 35, 1, p. 38-52 15 p.

Research output: Contribution to journalReview article

soybeans
Soybeans
carbon
Carbon
abortion (plants)

DNA aptamer functionalized nanomaterials for intracellular analysis, cancer cell imaging and drug delivery

Xing, H., Wong, N. Y., Xiang, Y. & Lu, Y. Aug 2012 In : Current Opinion in Chemical Biology. 16, 3-4, p. 429-435 7 p.

Research output: Contribution to journalReview article

Nucleotide Aptamers
Nanostructures
Neoplasms

Harvesting Carbon from Eastern US Forests: Opportunities and: Impacts of an Expanding Bioenergy Industry

Davis, S. C., Dietze, M., DeLucia, E., Field, C., Loarie, S., Hamburg, S. P., Parton, W., Potts, M., Ramage, B., Wang, D., Youngs, H. & Long, S. P. 2012 In : Forests. 3, 2, p. 370-397 28 p.

Research output: Contribution to journalReview article

biomass
abandoned land
carbon sinks
plantations
ecosystems

Measuring indirect land use change with biofuels: Implications for policy

Khanna, M. & Crago, C. L. Aug 2012 In : Annual Review of Resource Economics. 4, p. 161-184 24 p.

Research output: Contribution to journalReview article

Biofuels
Land use change
International trade
Pathway
Mitigation

Mitigating land loss in coastal Louisiana by controlled diversion of Mississippi River sand

Nittrouer, J. A., Best, J. L., Brantley, C., Cash, R. W., Czapiga, M., Kumar, P. & Parker, G. Aug 2012 In : Nature Geoscience. 5, 8, p. 534-537 4 p.

Research output: Contribution to journalReview article

river
spillway
sand
water column
coastal wetland

Storage ring measurements of the dissociative recombination of H 3 +

Kreckel, H., Petrignani, A., Novotny, O., Crabtree, K., Buhr, H., McCall, B. J. & Wolf, A. Nov 13 2012 In : Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences. 370, 1978, p. 5088-5100 13 p.

Research output: Contribution to journalReview article

Recombination
Storage rings
Ring
coefficients
Coefficient