Institute for Sustainability, Energy, and Environment

Research Output 1987 2018

2018

Alley cropping: Global patterns of species composition and function

Wolz, K. J. & DeLucia, E. H. Jan 15 2018 In : Agriculture, Ecosystems and Environment. 252, p. 61-68 8 p.

Research output: Research - peer-reviewReview article

alley cropping
species diversity
crop
crops
Populus
2017

3D-Printed Multidrug-Eluting Stent from Graphene-Nanoplatelet-Doped Biodegradable Polymer Composite

Misra, S. K., Ostadhossein, F., Babu, R., Kus, J., Tankasala, D., Sutrisno, A., Walsh, K. A., Bromfield, C. R. & Pan, D. Jun 7 2017 In : Advanced Healthcare Materials. 6, 11, 1700008

Research output: Research - peer-reviewArticle

Graphite
Stents
Polymers
Biodegradable polymers
Composite materials

A conundrum for density functional theory: DFT studies may sometimes get the right results for the wrong reasons

Hammes-Schiffer, S. Jan 6 2017 In : Science. 355, 6320, p. 28-29 2 p.

Research output: Research - peer-reviewReview article

A cyberGIS approach to uncertainty and sensitivity analysis in biomass supply chain optimization

Hu, H., Lin, T., Wang, S. & Rodriguez, L. F. 2017 In : Applied Energy. 203, p. 26-40 15 p.

Research output: Research - peer-reviewArticle

uncertainty analysis
sensitivity analysis
biomass
Uncertainty analysis
Sensitivity analysis

A cybergis-jupyter framework for geospatial analytics at scale

Yin, D., Liu, Y., Padmanabhan, A., Terstriep, J., Rush, J. & Wang, S. Jul 9 2017 PEARC 2017 - Practice and Experience in Advanced Research Computing 2017: Sustainability, Success and Impact. Association for Computing Machinery, Vol. Part F128771, a18

Research output: ResearchConference contribution

Information science
Information systems
Supercomputers
Cloud computing
Big data

Advances in the development of aptamer drug conjugates for targeted drug delivery

Chen, K., Liu, B., Yu, B., Zhong, W., Lu, Y., Zhang, J., Liao, J., Liu, J., Pu, Y., Qiu, L., Zhang, L., Liu, H. & Tan, W. May 1 2017 In : Wiley Interdisciplinary Reviews: Nanomedicine and Nanobiotechnology. 9, 3, e1438

Research output: Research - peer-reviewReview article

Pharmaceutical Preparations
Targeted drug delivery
Therapeutics
Oligonucleotides
Biomarkers

Allocation, not male resistance, increases male frequency during epidemics: a case study in facultatively sexual hosts

Hite, J. L., Penczykowski, R. M., Shocket, M. S., Griebel, K. A., Strauss, A. T., Duffy, M. A., Cáceres, C. E. & Hall, S. R. Nov 1 2017 In : Ecology. 98, 11, p. 2773-2783 11 p.

Research output: Research - peer-reviewArticle

case studies
allocation
gender
demographic statistics
parasites

Amplifying Progress toward Multiple Development Goals through Resource Recovery from Sanitation

Trimmer, J. T., Cusick, R. D. & Guest, J. S. Sep 19 2017 In : Environmental Science and Technology. 51, 18, p. 10765-10776 12 p.

Research output: Research - peer-reviewArticle

sanitation
resource
Sanitation
Recovery
nutrient

An interactive, extensible environment for power system simulation on the PMU time frame with a cyber security application

Overbye, T. J., Mao, Z., Shetye, K. S. & Weber, J. D. Mar 1 2017 2017 IEEE Texas Power and Energy Conference, TPEC 2017. Institute of Electrical and Electronics Engineers Inc., 7868264

Research output: ResearchConference contribution

Annual Editorial for Chemical Reviews

Hammes-Schiffer, S. Feb 8 2017 In : Chemical Reviews. 117, 3, p. 899 1 p.

Research output: Research - peer-reviewEditorial

Appreciation of peer reviewers for 2016

Montanari, A., Bahr, J., Blöschl, G., Cai, X., Mackay, D. S., Michalak, A., Rajaram, H. & Sanchez-Vila, X. Jun 1 2017 In : Water Resources Research. 53, 6, p. 4542-4561 20 p.

Research output: Research - peer-reviewEditorial

water resource
public

A service-oriented architecture for coupling web service models using the Basic Model Interface (BMI)

Jiang, P., Elag, M., Kumar, P., Peckham, S. D., Marini, L. & Rui, L. Jun 1 2017 In : Environmental Modelling and Software. 92, p. 107-118 12 p.

Research output: Research - peer-reviewArticle

Service oriented architecture (SOA)
Web services
services
Interoperability
modeling

A spatial fuzzy influence diagram for modelling spatial objects’ dependencies: a case study on tree-related electric outages

Zhang, Z., Demšar, U., Wang, S. & Virrantaus, K. Oct 5 2017 (Accepted/In press) In : International Journal of Geographical Information Science. p. 1-18 18 p.

Research output: Research - peer-reviewArticle

diagram
modeling
vulnerability
Information science
Electricity
biochemistry
space and time
crop production
climate change
photosynthesis

Avian and habitat characteristics influence tick infestation among birds in Illinois

Parker, C. M., Miller, J. R., Allan, B. F. & Ginsberg, H. May 1 2017 In : Journal of Medical Entomology. 54, 3, p. 550-558 9 p.

Research output: Research - peer-reviewArticle

tick infestations
birds
habitats
Tick Infestations
Birds

A vision for Water Resources Research

Clark, M. P., Bahr, J. A., Bierkens, M. F. P., Cai, X., Hogue, T. S., Luce, C. H., Lundquist, J. D., Mackay, D. S., van Meerveld, H. J. I., Rajaram, H., Sanchez-Vila, X. & Troch, P. A. Jun 1 2017 In : Water Resources Research. 53, 6, p. 4530-4532 3 p.

Research output: Research - peer-reviewEditorial

water resource
plan
science
services

BETYdb: a yield, trait, and ecosystem service database applied to second-generation bioenergy feedstock production

LeBauer, D., Kooper, R., Mulrooney, P., Rohde, S., Wang, D., Long, S. P. & Dietze, M. C. 2017 (Accepted/In press) In : GCB Bioenergy. 10, 1, p. 61-71 11 p.

Research output: Research - peer-reviewArticle

bioenergy
feedstocks
biofuels
ecosystem services
biofuel

Biomass and biofuels in China: Toward bioenergy resource potentials and their impacts on the environment

Qin, Z., Zhuang, Q., Cai, X., He, Y., Huang, Y., Jiang, D., Lin, E., Liu, Y., Tang, Y. & Wang, M. Q. Jan 1 2017 (Accepted/In press) In : Renewable and Sustainable Energy Reviews.

Research output: Research - peer-reviewArticle

Biofuels
Biomass
Ecosystems
Ethanol fuels
Alternative fuels
biorefining
economic analysis
sugarcane
ethanol
lipids

Biosynthetic approach to modeling and understanding metalloproteins using unnatural amino acids

Yu, Y., Cui, C., Wang, J. & Lu, Y. Feb 1 2017 In : Science China Chemistry. 60, 2, p. 188-200 13 p.

Research output: Research - peer-reviewReview article

Metalloproteins
Amino Acids
Azurin
Ribonucleotide Reductases
Catalysts

Bone-induced expression of integrin b3 enables targeted nanotherapy of breast cancer metastases

Ross, M. H. , Esser, A. K. , Fox, G. C. , Schmieder, A. H. , Yang, X. , Hu, G. , Pan, D. , Su, X. , Xu, Y. , Novack, D. V. , Walsh, T. , Colditz, G. A. , Lukaszewicz, G. H. , Cordell, E. , Novack, J. , Fitzpatrick, J. A. J. , Waning, D. L. , Mohammad, K. S. , Guise, T. A. , Lanza, G. M. & 1 others Weilbaecher, K. N. Nov 15 2017 In : Cancer Research. 77, 22, p. 6299-6312 14 p.

Research output: Research - peer-reviewArticle

Integrins
Breast Neoplasms
Neoplasm Metastasis
Bone and Bones
docetaxel

Bottom-Up Strategy To Prepare Nanoparticles with a Single DNA Strand

Xing, H., Bai, Y., Bai, Y., Tan, L. H., Tao, J., Pedretti, B., Vincil, G. A., Lu, Y. & Zimmerman, S. C. Mar 15 2017 In : Journal of the American Chemical Society. 139, 10, p. 3623-3626 4 p.

Research output: Research - peer-reviewArticle

DNA
nanoparticle
Nanoparticles
fluorescence
gold

Brazilian sugarcane ethanol as an expandable green alternative to crude oil use

Jaiswal, D., De Souza, A. P., Larsen, S., Lebauer, D. S., Miguez, F. E., Sparovek, G., Bollero, G., Buckeridge, M. S. & Long, S. P. Nov 1 2017 In : Nature Climate Change. 7, 11, p. 788-792 5 p.

Research output: Research - peer-reviewArticle

crude oil
ethanol
climate change
food
animal

Can integrating wildlife and livestock enhance ecosystem services in central Kenya?

Allan, B. F., Tallis, H., Chaplin-Kramer, R., Huckett, S., Kowal, V. A., Musengezi, J., Okanga, S., Ostfeld, R. S., Schieltz, J., Warui, C. M., Wood, S. A. & Keesing, F. Aug 1 2017 In : Frontiers in Ecology and the Environment. 15, 6, p. 328-335 8 p.

Research output: Research - peer-reviewArticle

ecosystem services
Kenya
wildlife
livestock
ecosystem service

Catalysts by design: The power of theory

Hammes-Schiffer, S. 2017 In : Accounts of Chemical Research. 50, 3, p. 561-566 6 p.

Research output: Research - peer-reviewReview article

Catalysts
Electrocatalysts
Photocatalysts

Causes for adaptation: Access to forests, markets and representation in Eastern Senegal

Faye, P. & Ribot, J. Jan 1 2017 In : Sustainability (Switzerland). 9, 2, 311

Research output: Research - peer-reviewArticle

market
Drought
vulnerability
hunger
disaster

Characterization of NiFe oxyhydroxide electrocatalysts by integrated electronic structure calculations and spectroelectrochemistry

Goldsmith, Z. K., Harshan, A. K., Gerken, J. B., Vörös, M., Galli, G., Stahl, S. S. & Hammes-Schiffer, S. Mar 21 2017 In : Proceedings of the National Academy of Sciences of the United States of America. 114, 12, p. 3050-3055 6 p.

Research output: Research - peer-reviewArticle

Electrocatalysts
Electronic structure
Oxidation
Catalysts
Oxidation-Reduction

Characterizing Vegetation Canopy Structure Using Airborne Remote Sensing Data

Dutta, D., Wang, K., Lee, E., Goodwell, A., Woo, D. K., Wagner, D. & Kumar, P. Feb 1 2017 In : IEEE Transactions on Geoscience and Remote Sensing. 55, 2, p. 1160-1178 19 p., 7762140

Research output: Research - peer-reviewArticle

leaf area
canopy
remote sensing
vegetation
Remote sensing

Communication: Density functional theory embedding with the orthogonality constrained basis set expansion procedure

Culpitt, T., Brorsen, K. R. & Hammes-Schiffer, S. Jun 7 2017 In : Journal of Chemical Physics. 146, 21, 211101

Research output: Research - peer-reviewArticle

orthogonality
embedding
communication
density functional theory
expansion

Concerted One-Electron Two-Proton Transfer Processes in Models Inspired by the Tyr-His Couple of Photosystem II

Huynh, M. T., Mora, S. J., Villalba, M., Tejeda-Ferrari, M. E., Liddell, P. A., Cherry, B. R., Teillout, A. L., MacHan, C. W., Kubiak, C. P., Gust, D., Moore, T. A., Hammes-Schiffer, S. & Moore, A. L. May 24 2017 In : ACS Central Science. 3, 5, p. 372-380 9 p.

Research output: Research - peer-reviewArticle

Proton transfer
Phenol
Oxidation-Reduction
Phenols
benzimidazole

Contribution of above- and belowground bioenergy crop residues to soil carbon

Carvalho, J. L. N., Hudiburg, T. W., Franco, H. C. J. & DeLucia, E. H. Aug 1 2017 In : GCB Bioenergy. 9, 8, p. 1333-1343 11 p.

Research output: Research - peer-reviewArticle

energy crops
crop residues
carbon
soil
bioenergy

Convergence characteristics of the variable projection method for mode extraction

Birchfield, A. B. & Overbye, T. J. Mar 1 2017 2017 IEEE Texas Power and Energy Conference, TPEC 2017. Institute of Electrical and Electronics Engineers Inc., 7868265

Research output: ResearchConference contribution

Modal analysis
Time series

Critical Zone services as environmental assessment criteria in intensively managed landscapes

Richardson, M. & Kumar, P. Jun 1 2017 In : Earth's Future. 5, 6, p. 617-632 16 p.

Research output: Research - peer-reviewArticle

services
environmental assessment criterion
production system
maize
agricultural production

Crops in silico: Generating virtual crops using an integrative and multi-scale modeling platform

Marshall-Colon, A. , Long, S. P. , Allen, D. K. , Allen, G. , Beard, D. A. , Benes, B. , Von Caemmerer, S. , Christensen, A. J. , Cox, D. J. , Hart, J. C. , Hirst, P. M. , Kannan, K. , Katz, D. S. , Lynch, J. P. , Millar, A. J. , Panneerselvam, B. , Price, N. D. , Prusinkiewicz, P. , Raila, D. , Shekar, R. G. & 9 others Shrivastava, S., Shukla, D., Srinivasan, V., Stitt, M., Turk, M. J., Voit, E. O., Wang, Y., Yin, X. & Zhu, X. G. May 15 2017 In : Frontiers in Plant Science. 8, 786

Research output: Research - peer-reviewArticle

crops
engineering
ecosystems
plant biology
climate models

Culex Flavivirus during West Nile Virus Epidemic and Interepidemic Years in Chicago, United States

Newman, C. M., Krebs, B. L., Anderson, T. K., Hamer, G. L., Ruiz, M. O., Brawn, J. D., Brown, W. M., Kitron, U. D. & Goldberg, T. L. Aug 1 2017 In : Vector-Borne and Zoonotic Diseases. 17, 8, p. 567-575 9 p.

Research output: Research - peer-reviewArticle

Flavivirus
West Nile virus
Culex
Culicidae
Viruses

Decreasing, not increasing, leaf area will raise crop yields under global atmospheric change

Srinivasan, V., Kumar, P. & Long, S. P. Apr 1 2017 In : Global Change Biology. 23, 4, p. 1626-1635 10 p.

Research output: Research - peer-reviewArticle

crop yield
leaf area
Carbon Monoxide
crop
soybean

Demand for biomass to meet renewable energy targets in the United States: implications for land use

Oliver, A. & Khanna, M. Sep 1 2017 In : GCB Bioenergy. 9, 9, p. 1476-1488 13 p.

Research output: Research - peer-reviewArticle

crop production
land use
biomass
energy
demand
Regional planning
Urban planning
Gravitation
Economics
urban area

Development of a practical multicomponent density functional for electron-proton correlation to produce accurate proton densities

Yang, Y., Brorsen, K. R., Culpitt, T., Pak, M. V. & Hammes-Schiffer, S. Sep 21 2017 In : Journal of Chemical Physics. 147, 11, 114113

Research output: Research - peer-reviewArticle

protons
electrons
Protons
density functional theory
orbitals

Development of a thermal-hydraulic analysis code TAC-DS for spent fuel dry-storage system for high-temperature pebble bed reactor

Wang, B., Wu, B., uddin, R., Jia, H. & Wang, J. Nov 1 2017 (Accepted/In press) In : Journal of Nuclear Science and Technology. p. 1-18 18 p.

Research output: Research - peer-reviewArticle

pebble bed reactors
spent fuels
hydraulics
Spent fuels
Hot Temperature

Development of a Three-Dimensional Ray-Tracing Model of Sugarcane Canopy Photosynthesis and Its Application in Assessing Impacts of Varied Row Spacing

Wang, Y., Song, Q., Jaiswal, D., P. de Souza, A., Long, S. P. & Zhu, X. G. Sep 1 2017 In : Bioenergy Research. 10, 3, p. 626-634 9 p.

Research output: Research - peer-reviewArticle

row spacing
sugarcane
planting
photosynthesis
canopy

Diversification and labor productivity on US permaculture farms

Ferguson, R. S. & Lovell, S. T. Oct 26 2017 (Accepted/In press) In : Renewable Agriculture and Food Systems. p. 1-12 12 p.

Research output: Research - peer-reviewArticle

permaculture
labor productivity
farms
Agriculture
Farms

DNAzyme sensors for detection of metal ions in the environment and imaging them in living cells

McGhee, C. E., Loh, K. Y. & Lu, Y. Jun 1 2017 In : Current Opinion in Biotechnology. 45, p. 191-201 11 p.

Research output: Research - peer-reviewReview article

Metal ions
Cells
Imaging techniques
Sensors
Catalytic DNA

Ecosystem services and tradeoffs in the home food gardens of African American, Chinese-origin and Mexican-origin households in Chicago, IL

Taylor, J. R., Lovell, S. T., Wortman, S. E. & Chan, M. Feb 1 2017 In : Renewable Agriculture and Food Systems. 32, 1, p. 69-86 18 p.

Research output: Research - peer-reviewArticle

African Americans
ornamental plants
ecosystem services
gardens
households

Editorial for Virtual Issue on Polymer Bioconjugates in Biology and Medicine

Van Hest, J., Sumerlin, B., Anseth, K. S., Shoichet, M. & Hammes-Schiffer, S. Feb 15 2017 In : Bioconjugate Chemistry. 28, 2, p. 282 1 p.

Research output: Research - peer-reviewEditorial

Editorial for Virtual Issue on Polymer Bioconjugates in Biology and Medicine

Van Hest, J., Sumerlin, B. S., Anseth, K. S., Shoichet, M. & Hammes-Schiffer, S. Feb 14 2017 In : Macromolecules. 50, 3, p. 713 1 p.

Research output: Research - peer-reviewEditorial

Editorial for Virtual Issue on Polymer Bioconjugates in Biology and Medicine

Van Hest, J., Sumerlin, B., Anseth, K. S., Shoichet, M. & Hammes-Schiffer, S. Feb 13 2017 In : Biomacromolecules. 18, 2, p. 315 1 p.

Research output: Research - peer-reviewEditorial

Effect of circular permutation on the structure and function of type 1 blue copper center in azurin

Yu, Y., Petrik, I. D., Chacón, K. N., Hosseinzadeh, P., Chen, H., Blackburn, N. J. & Lu, Y. Feb 1 2017 In : Protein Science. 26, 2, p. 218-226 9 p.

Research output: Research - peer-reviewArticle

Azurin
Copper
Proteins
Electrons
beta-Strand Protein Conformation

Effect of Spatial Filtering on Characterizing Soil Properties from Imaging Spectrometer Data

Dutta, D., Kumar, P. & Greenberg, J. A. Sep 1 2017 In : IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing. 10, 9, p. 4149-4170 22 p., 7935357

Research output: Research - peer-reviewArticle

soil property
spectrometer
effect
Spectrometers
Imaging techniques

Effects of Active Site Mutations on Specificity of Nucleobase Binding in Human DNA Polymerase η

Ucisik, M. N. & Hammes-Schiffer, S. Apr 20 2017 In : Journal of Physical Chemistry B. 121, 15, p. 3667-3675 9 p.

Research output: Research - peer-reviewArticle

Thymine
Catalytic Domain
Mutation
Rad30 protein
thymine