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Review article
2008

Targeting RNA with small molecules

Thomas, J. R. & Hergenrother, P. J., Apr 1 2008, In : Chemical reviews. 108, 4, p. 1171-1224 54 p.

Research output: Contribution to journalReview article

The sixth data release of the sloan digital sky survey

Adelman-McCarthy, J. K., Agüeros, M. A., Allam, S. S., Prieto, C. A., Anderson, K. S. J., Anderson, S. F., Annis, J., Bahcall, N. A., Bailer-Jones, C. A. L., Baldry, I. K., Barentine, J. C., Bassett, B. A., Becker, A. C., Beers, T. C., Bell, E. F., Berlind, A. A., Bernardi, M., Blanton, M. R., Bochanski, J. J., Boroski, W. N. & 143 others, Brinchmann, J., Brinkmann, J., Brunner, R. J., Budavári, T., Carliles, S., Carr, M. A., Castander, F. J., Cinabro, D., Cool, R. J., Covey, K. R., Csabai, I., Cunha, C. E., Davenport, J. R. A., Dilday, B., Doi, M., Eisenstein, D. J., Evans, M. L., Fan, X., Finkbeiner, D. P., Friedman, S. D., Frieman, J. A., Fukugita, M., Gänsicke, B. T., Gates, E., Gillespie, B., Glazebrook, K., Gray, J., Grebel, E. K., Gunn, J. E., Gurbani, V. K., Hall, P. B., Harding, P., Harvanek, M., Hawley, S. L., Hayes, J., Heckman, T. M., Hendry, J. S., Hindsley, R. B., Hirata, C. M., Hogan, C. J., Hogg, D. W., Hyde, J. B., Ichikawa, S. I., Ivezić, Ž., Jester, S., Johnson, J. A., Jorgensen, A. M., Jurić, M., Kent, S. M., Kessler, R., Kleinman, S. J., Knapp, G. R., Krön, R. G., Krzesinski, J., Kuropatkin, N., Lamb, D. Q., Lampeitl, H., Lebedeva, S., Lee, Y. S., Leger, R. F., Lépine, S., Lima, M., Lin, H., Long, D. C., Loomis, C. P., Loveday, J., Lupton, R. H., Malanushenko, O., Malanushenko, V., Mandelbaum, R., Margon, B., Marriner, J. P., Martínez-Delgado, D., Matsubara, T., McGehee, P. M., McKay, T. A., Meiksin, A., Morrison, H. L., Munn, J. A., Nakajima, R., Neilsen, E. H., Newberg, H. J., Nichol, R. C., Nicinski, T., Nieto-Santisteban, M., Nitta, A., Okamura, S., Owen, R., Oyaizu, H., Padmanabhan, N., Pan, K., Park, C., Peoples, J., Pier, J. R., Pope, A. C., Purger, N., Raddick, M. J., Fiorentin, P. R., Richards, G. T., Richmond, M. W., Riess, A. G., Rix, H. W., Rockosi, C. M., Sako, M., Schlegel, D. J., Schneider, D. P., Schreiber, M. R., Schwope, A. D., Seljak, U., Sesar, B., Sheldon, E., Shimasaku, K., Sivarani, T., Smith, J. A., Snedden, S. A., Steinmetz, M., Strauss, M. A., Subbarao, M., Suto, Y., Szalay, A. S., Szapudi, I., Szkody, P., Tegmark, M., Thakar, A. R., Tremonti, C. A., Tucker, D. L., Uomoto, A., Vanden Berk, D. E., Vandenberg, J., Vidrih, S., Vogeley, M. S., Voges, W., Vogt, N. P., Wadadekar, Y., Weinberg, D. H., West, A. A., White, S. D. M., Wilhite, B. C., Yanny, B., Yocum, D. R., York, D. G., Zehavi, I. & Zucker, D. B., Apr 2008, In : Astrophysical Journal, Supplement Series. 175, 2, p. 297-313 17 p.

Research output: Contribution to journalReview article

The utility of behavioral models and modules in molecular analyses of social behavior

Barron, A. B. & Robinson, G. E., Apr 1 2008, In : Genes, Brain and Behavior. 7, 3, p. 257-265 9 p.

Research output: Contribution to journalReview article

Using VMD: An introductory tutorial

Hsin, J., Arkhipov, A., Yin, Y., Stone, J. E. & Schulten, K., Dec 1 2008, In : Current Protocols in Bioinformatics. SUPPL. 24, p. 5.7.1-5.7.48

Research output: Contribution to journalReview article

What is the maximum efficiency with which photosynthesis can convert solar energy into biomass?

Zhu, X. G., Long, S. P. & Ort, D. R., Apr 1 2008, In : Current Opinion in Biotechnology. 19, 2, p. 153-159 7 p.

Research output: Contribution to journalReview article

2009

Advances in imaging secondary ion mass spectrometry for biological samples

Boxer, S. G., Kraft, M. L. & Weber, P. K., Nov 27 2009, In : Annual Review of Biophysics. 38, 1, p. 53-74 22 p.

Research output: Contribution to journalReview article

Agronomic experiences with Miscanthus x giganteus in Illinois, USA.

Pyter, R., Heaton, E., Dohleman, F., Voigt, T. & Long, S., 2009, In : Methods in molecular biology (Clifton, N.J.). 581, p. 41-52 12 p.

Research output: Contribution to journalReview article

A method for performing fully quantum mechanical simulations of gated silicon quantum wire structures

Akis, R., Ferry, D. K. & Gilbert, M. J., Jul 17 2009, In : Journal of Computational Electronics. 8, 2, p. 78-89 12 p.

Research output: Contribution to journalReview article

A review on polymer heat exchangers for HVAC&R applications

T'Joen, C., Park, Y., Wang, Q., Sommers, A., Han, X. & Jacobi, A. M., Aug 1 2009, In : International Journal of Refrigeration. 32, 5, p. 763-779 17 p.

Research output: Contribution to journalReview article

Atmospheric composition change: Climate-Chemistry interactions

Isaksen, I. S. A., Granier, C., Myhre, G., Berntsen, T. K., Dalsøren, S. B., Gauss, M., Klimont, Z., Benestad, R., Bousquet, P., Collins, W., Cox, T., Eyring, V., Fowler, D., Fuzzi, S., Jöckel, P., Laj, P., Lohmann, U., Maione, M., Monks, P., Prevot, A. S. H. & 11 others, Raes, F., Richter, A., Rognerud, B., Schulz, M., Shindell, D., Stevenson, D. S., Storelvmo, T., Wang, W. C., van Weele, M., Wild, M. & Wuebbles, D., Oct 1 2009, In : Atmospheric Environment. 43, 33, p. 5138-5192 55 p.

Research output: Contribution to journalReview article

Biological Timekeeping

Gillette, M. U. & Abbott, S. M., Jun 1 2009, In : Sleep Medicine Clinics. 4, 2, p. 99-110 12 p.

Research output: Contribution to journalReview article

Characterizing intercellular signaling peptides in drug addiction

Romanova, E. V., Hatcher, N. G., Rubakhin, S. S. & Sweedler, J. V., Jan 1 2009, In : Neuropharmacology. 56, SUPPL. 1, p. 196-204 9 p.

Research output: Contribution to journalReview article

Clustering of low-redshift (z ≤ 2.2) quasars from the sloan digital sky survey

Ross, N. P., Shen, Y., Strauss, M. A., Vanden Berk, D. E., Connolly, A. J., Richards, G. T., Schneider, D. P., Weinberg, D. H., Hall, P. B., Bahcall, N. A. & Brunner, R. J., Jan 1 2009, In : Astrophysical Journal. 697, 2, p. 1634-1655 22 p.

Research output: Contribution to journalReview article

Designer platinum nanoparticles: Control of shape, composition in alloy, nanostructure and electrocatalytic property

Peng, Z. & Yang, H., Apr 1 2009, In : Nano Today. 4, 2, p. 143-164 22 p.

Research output: Contribution to journalReview article

Design of functional metalloproteins

Lu, Y., Yeung, N., Sieracki, N. & Marshall, N. M., Aug 13 2009, In : Nature. 460, 7257, p. 855-862 8 p.

Research output: Contribution to journalReview article

Discovery Through the Computational Microscope

Lee, E. H., Hsin, J., Sotomayor, M., Comellas, G. & Schulten, K., Oct 14 2009, In : Structure. 17, 10, p. 1295-1306 12 p.

Research output: Contribution to journalReview article

FRET and mechanobiology

Wang, Y. & Wang, N., Dec 1 2009, In : Integrative Biology. 1, 10, p. 565-573 9 p.

Research output: Contribution to journalReview article

Imaging engineered tissues using structural and functional optical coherence tomography

Liang, X., Graf, B. W. & Boppart, S. A., Nov 1 2009, In : Journal of Biophotonics. 2, 11, p. 643-655 13 p.

Research output: Contribution to journalReview article

Industrial biotechnology: Tools and applications

Tang, W. L. & Zhao, H., Dec 1 2009, In : Biotechnology Journal. 4, 12, p. 1725-1739 15 p.

Research output: Contribution to journalReview article

International Journal of Adaptive Control and Signal Processing: Editorial

Bentsman, J. & Orlov, Y., Feb 1 2009, In : International Journal of Adaptive Control and Signal Processing. 23, 2, p. 111-113 3 p.

Research output: Contribution to journalReview article

Mechanics of stretchable inorganic electronic materials

Song, J., Jiang, H., Huang, Y. & Rogers, J. A., Sep 21 2009, In : Journal of Vacuum Science and Technology A: Vacuum, Surfaces and Films. 27, 5, p. 1107-1125 19 p.

Research output: Contribution to journalReview article

Mechanobiology of the skeleton

Turner, C. H., Warden, S. J., Bellido, T., Plotkin, L. I., Kumar, N., Jasiuk, I., Danzig, J. & Robling, A. G., Apr 28 2009, In : Science Signaling. 2, 68, p. pt3

Research output: Contribution to journalReview article

Molecular dynamics simulations of membrane channels and transporters

Khalili-Araghi, F., Gumbart, J., Wen, P. C., Sotomayor, M., Tajkhorshid, E. & Schulten, K., Apr 1 2009, In : Current Opinion in Structural Biology. 19, 2, p. 128-137 10 p.

Research output: Contribution to journalReview article

Nomenclature for factors of the SLA system, update 2008

Ho, C. S., Lunney, J. K., Ando, A., Rogel-Gaillard, C., Lee, J. H., Schook, L. B. & Smith, D. M., Apr 2009, In : Tissue Antigens. 73, 4, p. 307-315 9 p.

Research output: Contribution to journalReview article

Programming structure into 3D nanomaterials

Van Gough, D., Juhl, A. T. & Braun, P. V., Jun 1 2009, In : Materials Today. 12, 6, p. 28-35 8 p.

Research output: Contribution to journalReview article

Protein dynamics: From molecules, to interactions, to biology

Gruebele, M., Mar 1 2009, In : International journal of molecular sciences. 10, 3, p. 1360-1368 9 p.

Research output: Contribution to journalReview article

Protein engineering in designing tailored enzymes and microorganisms for biofuels production

Wen, F., Nair, N. U. & Zhao, H., Aug 1 2009, In : Current Opinion in Biotechnology. 20, 4, p. 412-419 8 p.

Research output: Contribution to journalReview article

Protein-membrane interactions: Blood clotting on nanoscale bilayers

Morrissey, J. H., Pureza, V., Davis-Harrison, R. L., Sligar, S. G., Rienstra, C. M., Kijac, A. Z., Ohkubo, Y. Z. & Tajkhorshid, E., Aug 4 2009, In : Journal of Thrombosis and Haemostasis. 7, SUPPL. 1, p. 169-172 4 p.

Research output: Contribution to journalReview article

Recognizing textual entailment: Rational, evaluation and approaches

Dagan, I., Dolan, B., Magnini, B. & Roth, D., Oct 2009, In : Natural Language Engineering. 15, 4

Research output: Contribution to journalReview article

Segmental dynamics in polymers: From cold melts to ageing and stressed glasses

Chen, K., Saltzman, E. J. & Schweizer, K. S., Dec 18 2009, In : Journal of Physics Condensed Matter. 21, 50, 503101.

Research output: Contribution to journalReview article

The parallelization of video processing: From programming models to applications

Lin, D., Huang, X., Nguyen, Q., Blackburn, J., Rodrigues, C., Huang, T., Do, M. N., Patel, S. J. & Hwu, W. M. W., Jan 1 2009, In : IEEE Signal Processing Magazine. 26, 6, p. 103-112 10 p.

Research output: Contribution to journalReview article

Ultrathin films of single-walled carbon nanotubes for electronics and sensors: A review of fundamental and applied aspects

Cao, Q. & Rogers, J. A., Jan 5 2009, In : Advanced Materials. 21, 1, p. 29-53 25 p.

Research output: Contribution to journalReview article

2010

A global-local approach to nonlinear system identification: A review

Lee, Y. S., Vakakis, A. F., McFarland, D. M. & Bergman, L., Nov 1 2010, In : Structural Control and Health Monitoring. 17, 7, p. 742-760 19 p.

Research output: Contribution to journalReview article

An experimental methodology to relate local strain to microstructural texture

Carroll, J., Abuzaid, W., Lambros, J. & Sehitoglu, H., Aug 1 2010, In : Review of Scientific Instruments. 81, 8, 083703.

Research output: Contribution to journalReview article

Anisotropic nanocrystal heterostructures: Synthesis and lattice strain

Shim, M. & McDaniel, H., Oct 2010, In : Current Opinion in Solid State and Materials Science. 14, 5, p. 83-94 12 p.

Research output: Contribution to journalReview article

A novel platform for in situ investigation of cells and tissues under mechanical strain

Ahmed, W. W., Kural, M. H. & Saif, M. T. A., Aug 2010, In : Acta Biomaterialia. 6, 8, p. 2979-2990 12 p.

Research output: Contribution to journalReview article

A review of new analytic techniques for quantifying symmetry in locomotion

Hsiao-Wecksler, E. T., Polk, J. D., Rosengren, K. S., Sosnoff, J. J. & Hong, S., Jun 1 2010, In : Symmetry. 2, 2, p. 1135-1155 21 p.

Research output: Contribution to journalReview article

Brunswikian theory and method as a foundation for simulation-based research on clinical judgment

Kirlik, A., Oct 1 2010, In : Simulation in Healthcare. 5, 5, p. 255-259 5 p.

Research output: Contribution to journalReview article

Capturing functional motions of membrane channels and transporters with molecular dynamics simulation

Shaikh, S. A., Wen, P. C., Enkavi, G., Huang, Z. & Tajkhorshid, E., Dec 1 2010, In : Journal of Computational and Theoretical Nanoscience. 7, 12, p. 2481-2500 20 p.

Research output: Contribution to journalReview article

Ceramics and ceramic matrix composites for heat exchangers in advanced thermal systems-A review

Sommers, A., Wang, Q., Han, X., T'Joen, C., Park, Y. & Jacobi, A. M., Aug 1 2010, In : Applied Thermal Engineering. 30, 11-12, p. 1277-1291 15 p.

Research output: Contribution to journalReview article

Dynamic optical coherence elastography: A review

Liang, X., Crecea, V. & Boppart, S. A., Oct 1 2010, In : Journal of Innovative Optical Health Sciences. 3, 4, p. 221-233 13 p.

Research output: Contribution to journalReview article

Electroreduction of dioxygen for fuel-cell applications: Materials and challenges

Gewirth, A. A. & Thorum, M. S., Apr 19 2010, In : Inorganic Chemistry. 49, 8, p. 3557-3566 10 p.

Research output: Contribution to journalReview article

Enzymatic corn wet milling process: Enzyme optimization & commercial trial

Singh, V., Johnston, D. B. & Neoh, S. L., Feb 1 2010, In : Industrial Biotechnology. 6, 1, p. 34-40 7 p.

Research output: Contribution to journalReview article

Experimental and computational determination of tRNA dynamics

Alexander, R. W., Eargle, J. & Luthey-Schulten, Z., Jan 21 2010, In : FEBS Letters. 584, 2, p. 376-386 11 p.

Research output: Contribution to journalReview article

Exploring transmembrane diffusion pathways with molecular dynamics

Wang, Y., Shaikh, S. A. & Tajkhorshid, E., Jun 2010, In : Physiology. 25, 3, p. 142-154 13 p.

Research output: Contribution to journalReview article

Feedstocks for lignocellulosic biofuels

Somerville, C., Youngs, H., Taylor, C., Davis, S. C. & Long, S. P., Aug 13 2010, In : Science. 329, 5993, p. 790-792 3 p.

Research output: Contribution to journalReview article

Fishing for the hidden peptidome in health and disease (Drug Abuse)

Fricker, L. D. & Sweedler, J. V., Dec 1 2010, In : AAPS Journal. 12, 4, p. 679-682 4 p.

Research output: Contribution to journalReview article

Fourier transform light scattering (FTLS) of cells and tissues

Ding, H., Wang, Z., Nguyen, F. T., Boppart, S. A., Millet, L. J., Gillette, M. U., Liu, J., Boppart, M. D. & Popescu, G., Dec 1 2010, In : Journal of Computational and Theoretical Nanoscience. 7, 12, p. 2501-2511 11 p.

Research output: Contribution to journalReview article