Research Output 1965 2020

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Review article
2015

Ultra-sensitive colorimetric plasmonic sensing and microfluidics for biofluid diagnostics using nanohole array

Ameen, A., Gartia, M. R., Hsiao, A., Chang, T. W., Xu, Z. & Liu, G. L., 2015, In : Journal of Nanomaterials. 2015, 460895.

Research output: Contribution to journalReview article

Microfluidics
Sensors
Proteins
Signal transduction
Metal nanoparticles

Waterborne Viruses: A Barrier to Safe Drinking Water

Gall, A. M., Mariñas, B. J., Lu, Y. & Shisler, J. L., Jun 1 2015, In : PLoS pathogens. 11, 6, e1004867.

Research output: Contribution to journalReview article

Drinking Water
Disease Outbreaks
Viruses
2014

25th anniversary article: Materials for high-performance biodegradable semiconductor devices

Hwang, S. W., Park, G., Cheng, H., Song, J. K., Kang, S. K., Yin, L., Kim, J. H., Omenetto, F. G., Huang, Y., Lee, K. M. & Rogers, J. A., Apr 2 2014, In : Advanced Materials. 26, 13, p. 1992-2000 9 p.

Research output: Contribution to journalReview article

Semiconductor devices
Electronic equipment
Silicon
Fluids
Biocompatibility

3D biofabrication strategies for tissue engineering and regenerative medicine

Bajaj, P., Schweller, R. M., Khademhosseini, A., West, J. L. & Bashir, R., Jul 2014, In : Annual Review of Biomedical Engineering. 16, p. 247-276 30 p.

Research output: Contribution to journalReview article

Regenerative Medicine
Biocompatible Materials
Tissue Engineering
Tissue engineering
Biomaterials

All-to-all communication in random regular directed graphs

Kim, J., Ghayoori, A. & Srikant, R., Jan 1 2014, In : IEEE Transactions on Network Science and Engineering. 1, 1, p. 43-52 10 p., 6971166.

Research output: Contribution to journalReview article

Directed graphs
Peer to peer networks
Communication
Switches

Anisotropic noble metal nanocrystal growth: The role of halides

Lohse, S. E., Burrows, N. D., Scarabelli, L., Liz-Marzán, L. M. & Murphy, C. J., Jan 14 2014, In : Chemistry of Materials. 26, 1, p. 34-43 10 p.

Research output: Contribution to journalReview article

Precious metals
Nanocrystals
Metals
Ions
Silver

Application of capillary electrophoresis for the early diagnosis of cancer

Yang, Z. & Sweedler, J. V., Jul 2014, In : Analytical and Bioanalytical Chemistry. 406, 17, p. 4013-4031 19 p.

Research output: Contribution to journalReview article

Capillary electrophoresis
Capillary Electrophoresis
Early Detection of Cancer
Microchip Electrophoresis
Biomarkers

Aquatic interfaces: A hydrodynamic and ecological perspective

Marion, A., Nikora, V., Puijalon, S., Bouma, T., Koll, K., Ballio, F., Tait, S., Zaramella, M., Sukhodolov, A., O'Hare, M., Wharton, G., Aberle, J., Tregnaghi, M., Davies, P., Nepf, H., Parker, G. & Statzner, B., Nov 2 2014, In : Journal of Hydraulic Research. 52, 6, p. 744-758 15 p.

Research output: Contribution to journalReview article

Hydrodynamics
hydrodynamics
Pressure regulation
upscaling
sediment-water interface

Brain circadian oscillators and redox regulation in mammals

Gillette, M. U. & Wang, T. A., Jun 20 2014, In : Antioxidants and Redox Signaling. 20, 18, p. 2955-2965 11 p.

Research output: Contribution to journalReview article

Mammals
Suprachiasmatic Nucleus
Oxidation-Reduction
Brain
Circadian Rhythm

Breakthroughs in Photonics 2013: Quantitative Phase Imaging: Metrology Meets Biology

Kim, T., Zhou, R., Goddard, L. L. & Popescu, G., Apr 1 2014, In : IEEE Photonics Journal. 6, 2, 0700909.

Research output: Contribution to journalReview article

biology
Photonics
metrology
photonics
Imaging techniques

Cadherin adhesion and mechanotransduction

Leckband, D. E. & de Rooij, J., Jan 1 2014, In : Annual review of cell and developmental biology. 30, p. 291-315 25 p.

Research output: Contribution to journalReview article

Cadherins
Intercellular Junctions
Vinculin
Catenins
Proteins

Cationic liposome-nucleic acid complexes for gene delivery and gene silencing

Safinya, C. R., Ewert, K. K., Majzoub, R. N. & Leal, C., Nov 1 2014, In : New Journal of Chemistry. 38, 11, p. 5164-5172 9 p.

Research output: Contribution to journalReview article

Liposomes
Nucleic acids
Nucleic Acids
Genes
DNA

Causal reasoning with mental models

Khemlani, S. S., Barbey, A. K. & Johnson-Laird, P. N., Oct 28 2014, In : Frontiers in Human Neuroscience. 8, October, 849.

Research output: Contribution to journalReview article

Neurosciences
Prefrontal Cortex

Cell and tissue engineering for liver disease

Bhatia, S. N., Underhill, G. H., Zaret, K. S. & Fox, I. J., Jul 16 2014, In : Science Translational Medicine. 6, 245, 245sr2.

Research output: Contribution to journalReview article

Cell Engineering
Tissue Engineering
Cell- and Tissue-Based Therapy
Liver Diseases
Liver

Circadian gating of neuronal functionality: A basis for iterative metaplasticity

Iyer, R., Wang, T. A. & Gillette, M. U., Sep 19 2014, In : Frontiers in Systems Neuroscience. 8

Research output: Contribution to journalReview article

Suprachiasmatic Nucleus
Neuronal Plasticity
Light
Intracellular Membranes
Circadian Clocks

Close encounters with DNA

Maffeo, C., Yoo, J., Comer, J., Wells, D. B., Luan, B. & Aksimentiev, A., Oct 15 2014, In : Journal of Physics Condensed Matter. 26, 41, 413101.

Research output: Contribution to journalReview article

encounters
DNA
deoxyribonucleic acid
simulation
Physical properties

Coherent anti-Stokes Raman scattering microscopy: Overcoming technical barriers for clinical translation

Tu, H. & Boppart, S. A., Jan 1 2014, In : Journal of Biophotonics. 7, 1-2, p. 9-22 14 p.

Research output: Contribution to journalReview article

Raman Spectrum Analysis
Raman scattering
Microscopy
Microscopic examination
tradeoffs

Critical review: Effects of complex interactions on structure and dynamics of supported metal catalysts

Frenkel, A. I., Cason, M. W., Elsen, A., Jung, U., Small, M. W., Nuzzo, R. G., Vila, F. D., Rehr, J. J., Stach, E. A. & Yang, J. C., Mar 1 2014, In : Journal of Vacuum Science and Technology A: Vacuum, Surfaces and Films. 32, 2, 020801.

Research output: Contribution to journalReview article

Metals
Absorption spectroscopy
x ray absorption
x ray spectroscopy
catalysts

Designed-in security for cyber-physical systems

Peisert, S., Margulies, J., Nicol, D. M., Khurana, H. & Sawall, C., Sep 2014, In : IEEE Security and Privacy. 12, 5, p. 9-12 4 p., 6924670.

Research output: Contribution to journalReview article

system development
assets
expert
Cyber Physical System
software

DNA aptamer technology for personalized medicine

Xing, H., Hwang, K., Li, J., Torabi, S. F. & Lu, Y., May 2014, In : Current Opinion in Chemical Engineering. 4, p. 79-87 9 p.

Research output: Contribution to journalReview article

Medicine
DNA
Drug delivery
Nanostructured materials
Microfluidics

DNA assembly techniques for next-generation combinatorial biosynthesis of natural products

Cobb, R. E., Ning, J. C. & Zhao, H., Feb 1 2014, In : Journal of Industrial Microbiology and Biotechnology. 41, 2, p. 469-477 9 p.

Research output: Contribution to journalReview article

Biosynthesis
Biological Products
DNA
Synthetic Biology
Cloning

DNA as sensors and imaging agents for metal ions

Xiang, Y. & Lu, Y., Feb 17 2014, In : Inorganic Chemistry. 53, 4, p. 1925-1942 18 p.

Research output: Contribution to journalReview article

Metal ions
metal ions
deoxyribonucleic acid
Imaging techniques
DNA

Dropwise condensation on micro-and nanostructured surfaces

Enright, R., Miljkovic, N., Alvarado, J. L., Kim, K. & Rose, J. W., Jul 3 2014, In : Nanoscale and Microscale Thermophysical Engineering. 18, 3, p. 223-250 28 p.

Research output: Contribution to journalReview article

Condensation
condensation
Heat transfer
heat transfer
Surface structure

Effective field theory beyond the standard model

Willenbrock, S. & Zhang, C., Oct 1 2014, In : Annual Review of Nuclear and Particle Science. 64, p. 83-100 18 p.

Research output: Contribution to journalReview article

operators
physics
pair production
bosons
coefficients

Effective spatial mapping for coupled code analysis of thermal-hydraulics/ neutron-kinetics of boiling water reactors

Peltonen, J., Ma, W. & Kozlowski, T., Jan 1 2014, In : Annals of Nuclear Energy. 63, p. 461-485 25 p.

Research output: Contribution to journalReview article

Boiling water reactors
Neutrons
Hydraulics
Kinetics
Hot Temperature

Electrified vehicles and the smart grid: The ITS perspective

Cheng, X., Hu, X., Yang, L., Husain, I., Inoue, K., Krein, P. T., Lefevre, R., Li, Y., Nishi, H., Taiber, J. G., Wang, F. Y., Zha, Y., Gao, W. & Li, Z., Aug 2014, In : IEEE Transactions on Intelligent Transportation Systems. 15, 4, p. 1388-1404 17 p., 6869118.

Research output: Contribution to journalReview article

Electric vehicles
Economics
Communication

Energy positive domestic wastewater treatment: The roles of anaerobic and phototrophic technologies

Shoener, B. D., Bradley, I. M., Cusick, R. D. & Guest, J. S., Jun 2014, In : Environmental Sciences: Processes and Impacts. 16, 6, p. 1204-1222 19 p.

Research output: Contribution to journalReview article

Waste Water
Wastewater treatment
Technology
energy
Bioelectric Energy Sources

Experimental behavior of steel fixed bearings and implications for seismic bridge response

Steelman, J. S., Filipov, E. T., Fahnestock, L. A., Revell, J. R., Lafave, J. M., Hajjar, J. F. & Foutch, D. A., Aug 1 2014, In : Journal of Bridge Engineering. 19, 8, A4014007.

Research output: Contribution to journalReview article

Bearings (structural)
Steel
Electric fuses
Earthquakes
Anchor bolts

Exploiting Issatchenkia orientalis SD108 for succinic acid production

Xiao, H., Shao, Z., Jiang, Y., Dole, S. & Zhao, H., Aug 27 2014, In : Microbial cell factories. 13, 1, 121.

Research output: Contribution to journalReview article

Organic acids
Succinic Acid
Acids
Yeast
Fermentation

Extremely Soft: Design with Rheologically Complex Fluids

Ewoldt, R. H., Mar 1 2014, In : Soft Robotics. 1, 1, p. 12-20 9 p.

Research output: Contribution to journalReview article

Robotics
Mucins
Cytoplasm
Gels
Fluids

Flavor structure of the nucleon sea

Chang, W. C. & Peng, J. C., Nov 2014, In : Progress in Particle and Nuclear Physics. 79, p. 95-135 41 p.

Research output: Contribution to journalReview article

nucleons
transverse momentum
quantum chromodynamics
quarks
physics

Functional DNA nanomaterials for sensing and imaging in living cells

Torabi, S. F. & Lu, Y., Aug 1 2014, In : Current Opinion in Biotechnology. 28, p. 88-95 8 p.

Research output: Contribution to journalReview article

Nanostructures
Nanostructured materials
DNA
Cells
Imaging techniques

Functional tuning and expanding of myoglobin by rational protein design

Lin, Y., Wang, J. & Lu, Y., Mar 2014, In : Science China Chemistry. 57, 3, p. 346-355 10 p.

Research output: Contribution to journalReview article

Myoglobin
Metalloproteins
Tuning
Proteins
Nitrite Reductases

Hot spots in energetic materials generated by infrared and ultrasound, detected by thermal imaging microscopy

Chen, M. W., You, S., Suslick, K. S. & Dlott, D. D., Feb 1 2014, In : Review of Scientific Instruments. 85, 2, 023705.

Research output: Contribution to journalReview article

Infrared imaging
Microscopic examination
Ultrasonics
microscopy
Infrared radiation

Hydrothermal liquefaction for algal biorefinery: A critical review

Tian, C., Li, B., Liu, Z., Zhang, Y. & Lu, H., Oct 2014, In : Renewable and Sustainable Energy Reviews. 38, p. 933-950 18 p.

Research output: Contribution to journalReview article

Liquefaction
Algae
Feedstocks
Lipids
Carbohydrates

Imaging lipids with secondary ion mass spectrometry

Kraft, M. L. & Klitzing, H. A., Aug 2014, In : Biochimica et Biophysica Acta - Molecular and Cell Biology of Lipids. 1841, 8, p. 1108-1119 12 p.

Research output: Contribution to journalReview article

Secondary Ion Mass Spectrometry
Lipids
Biochemistry

Interventions to reduce rehospitalizations after chronic obstructive pulmonary disease exacerbations: A systematic review

Prieto-Centurion, V., Markos, M. A., Ramey, N. I., Gussin, H. A., Nyenhuis, S. M., Joo, M. J., Prasad, B., Bracken, N., DiDomenico, R., Godwin, P. O., Jaffe, H. A., Kalhan, R., Pickard, A. S., Pittendrigh, B. R., Schatz, B. R., Sullivan, J. L., Thomashow, B. M., Williams, M. V. & Krishnan, J. A., Mar 2014, In : Annals of the American Thoracic Society. 11, 3, p. 417-424 8 p.

Research output: Contribution to journalReview article

Chronic Obstructive Pulmonary Disease
Disease Progression
Hospitalization
Centers for Medicare and Medicaid Services (U.S.)
Patient Readmission

Introduction to the special issue on learning semantics

Bordes, A., Bottou, L., Collobert, R., Roth, D., Weston, J. & Zettlemoyer, L., Feb 1 2014, In : Machine Learning. 94, 2, p. 127-131 5 p.

Research output: Contribution to journalReview article

Semantics
Reinforcement learning
Learning systems
Neural networks

Looking in the right direction Carl Woese and evolutionary biology

Goldenfeld, N., Jan 1 2014, In : RNA Biology. 11, 3, p. 248-253 6 p.

Research output: Contribution to journalReview article

Archaea
Population Genetics
Microbiology
Direction compound
Transcend

Materials chemistry in 3D templates for functional photonics

Braun, P. V., Jan 14 2014, In : Chemistry of Materials. 26, 1, p. 277-286 10 p.

Research output: Contribution to journalReview article

Photonics
Energy harvesting
Light emission
Metamaterials
Solar energy

McGehee et al. Reply

McGehee, W. R., Kondov, S. S., Xu, W., Zirbel, J. J. & DeMarco, B. L., Aug 26 2014, In : Physical review letters. 113, 9, 099602.

Research output: Contribution to journalReview article

Metalloenzyme design and engineering through strategic modifications of native protein scaffolds

Petrik, I. D., Liu, J. & Lu, Y., Apr 1 2014, In : Current Opinion in Chemical Biology. 19, 1, p. 67-75 9 p.

Research output: Contribution to journalReview article

Scaffolds
Protein Engineering
Catalysis
Catalytic Domain
Proteins

Metalloproteins containing cytochrome, iron-sulfur, or copper redox centers

Liu, J., Chakraborty, S., Hosseinzadeh, P., Yu, Y., Tian, S., Petrik, I., Bhagi, A. & Lu, Y., Apr 23 2014, In : Chemical reviews. 114, 8, p. 4366-4369 4 p.

Research output: Contribution to journalReview article

Metalloproteins
Cytochromes
Sulfur
Copper
Iron

Methods to study the tumor microenvironment under controlled oxygen conditions

Byrne, M. B., Leslie, M. T., Gaskins, H. R. & Kenis, P. J. A., Nov 1 2014, In : Trends in Biotechnology. 32, 11, p. 556-563 8 p.

Research output: Contribution to journalReview article

Tumor Microenvironment
Tumors
Microfluidics
Oxygen
Epithelial-Mesenchymal Transition

Microstructures and properties of high-entropy alloys

Zhang, Y., Zuo, T. T., Tang, Z., Gao, M. C., Dahmen, K. A., Liaw, P. K. & Lu, Z. P., Apr 2014, In : Progress in Materials Science. 61, p. 1-93 93 p.

Research output: Contribution to journalReview article

Entropy
Microstructure
Metallic glass
Magnetization
Stainless Steel

Nano/micro and spectroscopic approaches to food pathogen detection

Cho, I. H., Radadia, A. D., Farrokhzad, K., Ximenes, E., Bae, E., Singh, A. K., Oliver, H., Ladisch, M., Bhunia, A., Applegate, B., Mauer, L., Bashir, R. & Irudayaraj, J., Jun 2014, In : Annual Review of Analytical Chemistry. 7, p. 65-88 24 p.

Research output: Contribution to journalReview article

Pathogens
Bacteriophages
Biosensors
Light scattering
Explosions

Nanoscale thermal transport. II. 2003-2012

Cahill, D. G., Braun, P. V., Chen, G., Clarke, D. R., Fan, S., Goodson, K. E., Keblinski, P., King, W. P., Mahan, G. D., Majumdar, A., Maris, H. J., Phillpot, S. R., Pop, E. & Shi, L., Mar 2014, In : Applied Physics Reviews. 1, 1, 011305.

Research output: Contribution to journalReview article

thermal conductivity
physics
thermal analysis
spatial resolution
crystals

New technologies for measuring single cell mass

Popescu, G., Park, K., Mir, M. & Bashir, R., Feb 21 2014, In : Lab on a chip. 14, 4, p. 646-652 7 p.

Research output: Contribution to journalReview article

Cells
Technology
Imaging techniques
Sensors
Medicine

Novel phenomenology of parton distributions from the Drell-Yan process

Peng, J. C. & Qiu, J. W., May 1 2014, In : Progress in Particle and Nuclear Physics. 76, p. 43-75 33 p.

Research output: Contribution to journalReview article

phenomenology
partons
leptons
pair production
substructures

Optical spectroscopy and velocity dispersions of galaxy clusters from the SPT-SZ survey

Ruel, J., Bazin, G., Bayliss, M., Brodwin, M., Foley, R. J., Stalder, B., Aird, K. A., Armstrong, R., Ashby, M. L. N., Bautz, M., Benson, B. A., Bleem, L. E., Bocquet, S., Carlstrom, J. E., Chang, C. L., Chapman, S. C., Cho, H. M., Clocchiatti, A., Crawford, T. M., Crites, A. T. & 62 others, De Haan, T., Desai, S., Dobbs, M. A., Dudley, J. P., Forman, W. R., George, E. M., Gladders, M. D., Gonzalez, A. H., Halverson, N. W., Harrington, N. L., High, F. W., Holder, G. P., Holzapfel, W. L., Hrubes, J. D., Jones, C., Joy, M., Keisler, R., Knox, L., Lee, A. T., Leitch, E. M., Liu, J., Lueker, M., Luong-Van, D., Mantz, A., Marrone, D. P., McDonald, M., McMahon, J. J., Mehl, J., Meyer, S. S., Mocanu, L., Mohr, J. J., Montroy, T. E., Murray, S. S., Natoli, T., Nurgaliev, D., Padin, S., Plagge, T., Pryke, C., Reichardt, C. L., Rest, A., Ruhl, J. E., Saliwanchik, B. R., Saro, A., Sayre, J. T., Schaffer, K. K., Shaw, L., Shirokoff, E., Song, J., Šuhada, R., Spieler, H. G., Stanford, S. A., Staniszewski, Z., Starsk, A. A., Story, K., Stubbs, C. W., Van Engelen, A., Vanderlinde, K., Vieira, J. D., Vikhlinin, A., Williamson, R., Zahn, O. & Zenteno, A., Sep 1 2014, In : Astrophysical Journal. 792, 1, 45.

Research output: Contribution to journalReview article

poles
spectroscopy
telescopes
galaxies
catalogs