Research Output 1965 2020

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Review article
2015

Blood flow mechanics in cardiovascular development

Boselli, F., Freund, J. B. & Vermot, J., Jul 8 2015, In : Cellular and Molecular Life Sciences. 72, 13, p. 2545-2559 15 p.

Research output: Contribution to journalReview article

Mechanics
Hemodynamics
Gene Regulatory Networks
Morphogenesis
Embryonic Structures

Building biological foundries for next-generation synthetic biology

Chao, R., Yuan, Y. B. & Zhao, H., Jul 24 2015, In : Science China Life Sciences. 58, 7, p. 658-665 8 p.

Research output: Contribution to journalReview article

Synthetic Biology
synthetic biology
Foundries
top-down approach
Rapid prototyping

Can meta-omics help to establish causality between contaminant biotransformations and genes or gene products?

Johnson, D. R., Helbling, D. E., Men, Y. & Fenner, K., Jan 1 2015, In : Environmental Science: Water Research and Technology. 1, 3, p. 272-278 7 p.

Research output: Contribution to journalReview article

biotransformation
Genes
Impurities
Enzymes
pollutant

Combining C6 and C5 sugar metabolism for enhancing microbial bioconversion

Zhang, G. C., Liu, J. J., Kong, I. I., Kwak, S. & Jin, Y-S., Dec 1 2015, In : Current Opinion in Chemical Biology. 29, p. 49-57 9 p.

Research output: Contribution to journalReview article

Bioconversion
Metabolism
Sugars
Fermentation
Biomass

Comments on "Observability of Switched Linear Systems: Characterization and Observer Design"

Tanwani, A., Shim, H. & Liberzon, D., Dec 2015, In : IEEE Transactions on Automatic Control. 60, 12, p. 3396-3400 5 p., 7084623.

Research output: Contribution to journalReview article

Observability
Linear systems
State estimation

Comparative in operando studies in heterogeneous catalysis: Atomic and electronic structural features in the hydrogenation of ethylene over supported pd and pt catalysts

Jung, U., Elsen, A., Li, Y., Smith, J. G., Small, M. W., Stach, E. A., Frenkel, A. I. & Nuzzo, R. G., Mar 6 2015, In : ACS Catalysis. 5, 3, p. 1539-1551 13 p.

Research output: Contribution to journalReview article

Catalysis
Hydrogenation
Ethylene
Hydrogen
Catalysts

Computational characterization of structural dynamics underlying function in active membrane transporters

Li, J., Wen, P. C., Moradi, M. & Tajkhorshid, E., Apr 1 2015, In : Current Opinion in Structural Biology. 31, p. 96-105 10 p.

Research output: Contribution to journalReview article

Membrane Transport Proteins
Active Biological Transport
Molecular Dynamics Simulation
Hydrolysis
Adenosine Triphosphate

Dissecting diversity in the social brain

Robinson, G. E., Dec 11 2015, In : Science. 350, 6266, p. 1310-1312 3 p.

Research output: Contribution to journalReview article

Animal Sexual Behavior
Vasopressin Receptors
Arvicolinae
sexual behavior
Social Behavior

Dynamic analysis of risers using a novel multilayered pipe beam element model

Aguiar, L. L., Almeida, C. A. & Paulino, G., Dec 1 2015, In : Marine Structures. 44, p. 211-231 21 p.

Research output: Contribution to journalReview article

Dynamic analysis
Pipe
Hydrodynamics
Damping
Fluids

Emerging techniques for the in situ analysis of reaction intermediates on photo-electrochemical interfaces

Simpson, B. H. & Rodriguez Lopez, J., Sep 7 2015, In : Analytical Methods. 7, 17, p. 7029-7041 13 p.

Research output: Contribution to journalReview article

Reaction intermediates
Street cleaning
Energy gap
Surface reactions
Photocatalysts

Encoding and decoding with prior knowledge: From SLIM to SPICE

Ma, C., Lam, F. & Liang, Z-P., 2015, In : eMagRes. 4, 2, p. 535-542 8 p.

Research output: Contribution to journalReview article

SPICE
Computer-Assisted Image Processing
Decoding
Fourier Analysis
Magnetic Resonance Imaging

Endocannabinoid metabolism by cytochrome P450 monooxygenases

Zelasko, S., Arnold, W. R. & Das, A., Jan 1 2015, In : Prostaglandins and Other Lipid Mediators. 116-117, p. 112-123 12 p.

Research output: Contribution to journalReview article

Endocannabinoids
Mixed Function Oxygenases
Metabolism
Cytochrome P-450 Enzyme System
Lipoxygenase

Engineering the hematopoietic stem cell niche: Frontiers in biomaterial science

Choi, J. S., Mahadik, B. P. & Harley, B. A. C., Oct 2015, In : Biotechnology Journal. 10, 10, p. 1529-1545 17 p.

Research output: Contribution to journalReview article

Stem Cell Niche
Biocompatible Materials
Hematopoietic Stem Cells
Biomimetics
Cell Communication

Enhanced sampling techniques in molecular dynamics simulations of biological systems

Bernardi, R. C., Melo, M. C. R. & Schulten, K., May 2015, In : Biochimica et Biophysica Acta - General Subjects. 1850, 5, p. 872-877 6 p.

Research output: Contribution to journalReview article

Biological systems
Molecular Dynamics Simulation
Molecular dynamics
Sampling
Computer simulation

Extracting knowledge from chemical imaging data using computational algorithms for digital cancer diagnosis

Tiwari, S. & Bhargava, R., Jun 1 2015, In : Yale Journal of Biology and Medicine. 88, 2, p. 131-143 13 p.

Research output: Contribution to journalReview article

Infrared imaging
Imaging techniques
Pattern recognition
Neoplasms
Precision Medicine

Fast-folding proteins under stress

Dave, K. & Gruebele, M., Nov 1 2015, In : Cellular and Molecular Life Sciences. 72, 22, p. 4273-4285 13 p.

Research output: Contribution to journalReview article

Protein Folding
Heat-Shock Proteins
Pressure
Proteins
Temperature

Flavin-based fluorescent proteins: Emerging paradigms in biological imaging

Mukherjee, A. & Schroeder, C. M., Feb 2015, In : Current Opinion in Biotechnology. 31, p. 16-23 8 p.

Research output: Contribution to journalReview article

Proteins
Imaging techniques
Virus Assembly
Green Fluorescent Proteins
4,6-dinitro-o-cresol

Fouling of enhanced tubes for condensers used in cooling tower systems: A literature review

Shen, C., Cirone, C., Jacobi, A. M. & Wang, X., Mar 25 2015, In : Applied Thermal Engineering. 79, p. 74-87 14 p.

Research output: Contribution to journalReview article

Condensers (liquefiers)
Cooling towers
Fouling
Water cooling towers
Cooling water

From association to prediction: Statistical methods for the dissection and selection of complex traits in plants

Lipka, A. E., Kandianis, C. B., Hudson, M. E., Yu, J., Drnevich, J., Bradbury, P. J. & Gore, M. A., Apr 1 2015, In : Current opinion in plant biology. 24, p. 110-118 9 p.

Research output: Contribution to journalReview article

statistical analysis
prediction
phenotype
marker-assisted selection
genotyping

Growth of Au on Pt Icosahedral Nanoparticles Revealed by Low-Dose in Situ TEM

Wu, J., Gao, W., Wen, J., Miller, D. J., Lu, P., Zuo, J. M. & Yang, H., Apr 8 2015, In : Nano letters. 15, 4, p. 2711-2715 5 p.

Research output: Contribution to journalReview article

Nanoparticles
Transmission electron microscopy
dosage
nanoparticles
transmission electron microscopy

Guest editorial: special section on mining software repositories

Di Penta, M. & Xie, T., Apr 1 2015, In : Empirical Software Engineering. 20, 2, p. 291-293 3 p.

Research output: Contribution to journalReview article

Heterogeneous nucleants for crystallogenesis and bioseparation

Shah, U. V., Amberg, C., Diao, Y., Yang, Z. & Heng, J. Y. Y., May 2015, In : Current Opinion in Chemical Engineering. 8, p. 69-75 7 p., 238.

Research output: Contribution to journalReview article

Nucleation
Crystallization
Surface topography
Surface chemistry
Purification

Improving and repurposing biocatalysts via directed evolution

Denard, C. A., Ren, H. & Zhao, H., Apr 1 2015, In : Current Opinion in Chemical Biology. 25, p. 55-64 10 p.

Research output: Contribution to journalReview article

Enzymes
Biocatalysis
Protein Engineering
Stereoselectivity
Chemical reactivity

Individualized medicine and the microbiome in reproductive tract

Braundmeier, A. G., Lenz, K. M., Inman, K. S., Chia, N., Jeraldo, P., Walther-António, M. R. S., Berg Miller, M. E., Yang, F., Creedon, D. J., Nelson, H. & White, B. A., Jan 1 2015, In : Frontiers in Physiology. 6, APR, 97.

Research output: Contribution to journalReview article

Precision Medicine
Microbiota
Reproductive Health
Microbial Genome
Metagenome

Innovations in steel design: Research needs for global sustainability

McConnell, J. R. & Fahnestock, L. A., Feb 1 2015, In : Journal of Structural Engineering (United States). 141, 2, 02514001.

Research output: Contribution to journalReview article

Steel
Civil engineering
Sustainable development
Innovation

Invited review: Evolution of meat animal growth research during the past 50 years: Adipose and muscle stem cells

Dodson, M. V., Allen, R. E., Du, M., Bergen, W. G., Velleman, S. G., Poulos, S. P., Fernyhough-Culver, M., Wheeler, M. B., Duckett, S. K., Young, M. R. I., Voy, B. H., Jiang, Z. & Hausman, G. J., Feb 23 2015, In : Journal of animal science. 93, 2, p. 457-481 25 p.

Research output: Contribution to journalReview article

animal growth
food animals
Meat
myocytes
Muscle Cells

Label-free biosensor imaging on photonic crystal surfaces

Zhuo, Y. & Cunningham, B. T., Aug 28 2015, In : Sensors (Switzerland). 15, 9, p. 21613-21635 23 p.

Research output: Contribution to journalReview article

Optics and Photonics
Biosensing Techniques
Photonic crystals
bioinstrumentation
crystal surfaces

Luminescence Blinking of a Reacting Quantum Dot

Routzahn, A. L. & Jain, P. K., Apr 8 2015, In : Nano letters. 15, 4, p. 2504-2509 6 p.

Research output: Contribution to journalReview article

blinking
Semiconductor quantum dots
Luminescence
quantum dots
luminescence

Mass spectrometry-based characterization of endogenous peptides and metabolites in small volume samples

Ong, T. H., Tillmaand, E. G., Makurath, M., Rubakhin, S. S. & Sweedler, J. V., Jul 1 2015, In : Biochimica et Biophysica Acta - Proteins and Proteomics. 1854, 7, p. 732-740 9 p.

Research output: Contribution to journalReview article

Metabolites
Mass spectrometry
Mass Spectrometry
Peptides
Assays

Mechanics of stretchable batteries and supercapacitors

Zhang, Y., Huang, Y. & Rogers, J. A., Jun 1 2015, In : Current Opinion in Solid State and Materials Science. 19, 3, p. 190-199 10 p., 636.

Research output: Contribution to journalReview article

Mechanics
Electronic equipment
Structural design
Fractals
Energy storage

Mechanisms, Capabilities, and Applications of High-Resolution Electrohydrodynamic Jet Printing

Onses, M. S., Sutanto, E., Ferreira, P. M., Alleyne, A. G. & Rogers, J. A., Sep 1 2015, In : Small. 11, 34, p. 4237-4266 30 p.

Research output: Contribution to journalReview article

Printing
Electrohydrodynamics
Optics and Photonics
Ink
Tissue Engineering

Meeting the global food demand of the future by engineering crop photosynthesis and yield potential

Long, S. P., Marshall-Colon, A. & Zhu, X. G., Mar 26 2015, In : Cell. 161, 1, p. 56-66 11 p., 8102.

Research output: Contribution to journalReview article

Genetic Engineering
Photosynthesis
Computer Simulation
Crops
Food

Modular spacetime

Freidel, L., Leigh, R. G. & Minic, D., Oct 1 2015, In : International Journal of Modern Physics D. 24, 12, 1544028.

Research output: Contribution to journalReview article

string theory
Space-time
Effective Field Theory
String Theory
Reformulation

Molecular dynamics simulations of large macromolecular complexes

Perilla, J. R., Goh, B. C., Cassidy, C. K., Liu, B., Bernardi, R. C., Rudack, T., Yu, H., Wu, Z. & Schulten, K., Apr 1 2015, In : Current Opinion in Structural Biology. 31, p. 64-74 11 p.

Research output: Contribution to journalReview article

Macromolecular Substances
Molecular Dynamics Simulation
Biological Phenomena
Ribosomes
Energy Metabolism

Motivated explanation

Patterson, R., Operskalski, J. T. & Barbey, A. K., Oct 16 2015, In : Frontiers in Human Neuroscience. 9, OCTOBER, 559.

Research output: Contribution to journalReview article

Motivation
Cognitive Dissonance
Deception
Neurosciences
Teaching

Nanomaterial-based biosensors using dual transducing elements for solution phase detection

Li, N., Su, X. & Lu, Y., May 7 2015, In : Analyst. 140, 9, p. 2916-2943 28 p.

Research output: Contribution to journalReview article

Nanostructures
Biosensing Techniques
transducer
Nanostructured materials
Biosensors

National surveys of population health: Big data analytics for mobile health monitors

Schatz, B. R., Dec 1 2015, In : Big Data. 3, 4, p. 219-229 11 p.

Research output: Contribution to journalReview article

Health
Medicine
Smartphones
Telephone
Mobile devices

Network topology and dynamics in traumatic brain injury

Barbey, A. K., Belli, A., Logan, A., Rubin, R., Zamroziewicz, M. & Operskalski, J. T., Aug 1 2015, In : Current Opinion in Behavioral Sciences. 4, p. 92-102 11 p.

Research output: Contribution to journalReview article

Brain Injuries
Recovery of Function
Rehabilitation
Phenotype
Traumatic Brain Injury

Peptidomics for the discovery and characterization of neuropeptides and hormones

Romanova, E. V. & Sweedler, J. V., Sep 12 2015, In : Trends in Pharmacological Sciences. 36, 9, p. 579-586 8 p.

Research output: Contribution to journalReview article

G-Protein-Coupled Receptors
Neuropeptides
Hormones
Orphaned Children
Endocrine System

Physical Chemistry of Climate Metrics

Ravishankara, A. R., Rudich, Y. & Wuebbles, D. J., Jan 1 2015, In : Chemical reviews. 115, 10, p. 3682-3703 22 p.

Research output: Contribution to journalReview article

Physical chemistry
Aerosols
Greenhouse gases
Ice
Planets

Plasmon resonances for solar energy harvesting: A mechanistic outlook

Smith, J. G., Faucheaux, J. A. & Jain, P., Feb 1 2015, In : Nano Today. 10, 1, p. 67-80 14 p.

Research output: Contribution to journalReview article

Solar Energy
Energy harvesting
Solar energy
Energy conversion
Light

Policy, procedures, and goals at JOSA A: Editorial

Gori, F. & Carney, P. S., Jan 1 2015, In : Journal of the Optical Society of America A: Optics and Image Science, and Vision. 32, 8, p. ED1

Research output: Contribution to journalReview article

Photonics
Optics
Optics and Photonics
Manuscripts
Research Personnel

Progress in Cherenkov femtosecond fiber lasers

Liu, X., Svane, A. S., Lægsgaard, J., Tu, H., Boppart, S. A. & Turchinovich, D., Dec 9 2015, In : Journal of Physics D: Applied Physics. 49, 2, 023001.

Research output: Contribution to journalReview article

Fiber lasers
fiber lasers
Lasers
wavelengths
Wavelength

Quantum-classical path integral: A rigorous approach to condensed phase dynamics

Makri, N., Sep 1 2015, In : International Journal of Quantum Chemistry. 115, 18, p. 1209-1214 6 p.

Research output: Contribution to journalReview article

Trajectories
trajectories
Wave functions
degrees of freedom
methodology

Rapid prototyping of microbial cell factories via genome-scale engineering

Si, T., Xiao, H. & Zhao, H., Nov 15 2015, In : Biotechnology Advances. 33, 7, p. 1420-1432 13 p.

Research output: Contribution to journalReview article

Rapid prototyping
Industrial plants
Genes
Genome
Biological systems

Recent advances in combinatorial biosynthesis for drug discovery

Sun, H., Liu, Z., Zhao, H. & Ang, E. L., Feb 12 2015, In : Drug Design, Development and Therapy. 9, p. 823-833 11 p.

Research output: Contribution to journalReview article

Drug Discovery
Biological Products
Biosynthetic Pathways
Pharmaceutical Preparations
Poisons

Recent development in the preparation of nanoparticles as fuel cell catalysts

Zhu, F., Kim, J., Tsao, K. C., Zhang, J. & Yang, H., May 31 2015, In : Current Opinion in Chemical Engineering. 8, p. 89-97 9 p., 241.

Research output: Contribution to journalReview article

Electrocatalysts
Fuel cells
Nanoparticles
Catalysts
Proton exchange membrane fuel cells (PEMFC)

Recent Progress in Obtaining Semiconducting Single-Walled Carbon Nanotubes for Transistor Applications

Islam, A. E., Rogers, J. A. & Alam, M. A., Dec 22 2015, In : Advanced Materials. 27, 48, p. 7908-7937 30 p.

Research output: Contribution to journalReview article

Single-walled carbon nanotubes (SWCN)
Transistors
Integrated circuits