Research Output 1965 2020

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Review article
2005

Modeling and simulation in security evaluation

Nicol, D. M., Sep 1 2005, In : IEEE Security and Privacy. 3, 5, p. 71-74 4 p.

Research output: Contribution to journalReview article

Routers
Sensor networks
Internet
simulation
evaluation

Modeling speciation in highly concentrated alkaline silicate solutions

Provis, J. L., Duxson, P., Lukey, G. C., Separovic, F., Kriven, W. M. & Van Deventer, J. S. J., Nov 9 2005, In : Industrial and Engineering Chemistry Research. 44, 23, p. 8899-8908 10 p.

Research output: Contribution to journalReview article

Silicates
Ions
Alkali Metals
Sodium
Alkali metals

Molecular cardiovascular imaging

Dobrucki, L. W. & Sinusas, A. J., Mar 2005, In : Current Cardiology Reports. 7, 2, p. 130-135 6 p.

Research output: Contribution to journalReview article

Molecular Imaging
Single-Photon Emission-Computed Tomography
Positron-Emission Tomography
Diagnostic Imaging
Radionuclide Imaging

Molecular dynamics simulations of proteins in lipid bilayers

Gumbart, J., Wang, Y., Aksimentiev, A., Tajkhorshid, E. & Schulten, K., Aug 1 2005, In : Current Opinion in Structural Biology. 15, 4, p. 423-431 9 p.

Research output: Contribution to journalReview article

Lipid Bilayers
Molecular Dynamics Simulation
Membrane Proteins
Proteins
Aquaporins

Multiscale modeling of solidification: Phase-field methods to adaptive mesh refinement

Provatas, N., Greenwood, M., Athreya, B., Goldenfeld, N. D. & Dantzig, J., Dec 20 2005, In : International Journal of Modern Physics B. 19, 31, p. 4525-4565 41 p.

Research output: Contribution to journalReview article

solidification
microstructure
phase transformations
mesh
spacing

Nomenclature for factors of the SLA class-I system, 2004

Smith, D. M., Lunney, J. K., Martens, G. W., Ando, A., Lee, J. H., Ho, C. S., Schook, L., Renard, C. & Chardon, P., Feb 1 2005, In : Tissue Antigens. 65, 2, p. 136-149 14 p.

Research output: Contribution to journalReview article

Terminology
Major Histocompatibility Complex
Nucleic Acid Databases
Alleles
Databases

Nomenclature for factors of the swine leukocyte antigen class II system, 20O5

Smith, D. M., Lunney, J. K., Ho, C. S., Martens, G. W., Ando, A., Lee, J. H., Schook, L., Renard, C. & Chardon, P., Dec 1 2005, In : Tissue Antigens. 66, 6, p. 623-639 17 p.

Research output: Contribution to journalReview article

Terminology
Major Histocompatibility Complex
Nucleic Acid Databases
Databases
MHC Class II Genes

Predicting complex systems with a holistic approach

Hubler, A. W., Jan 1 2005, In : Complexity. 10, 3, p. 11-16 6 p.

Research output: Contribution to journalReview article

Property measurement utilizing atomic/molecular filter-based diagnostics

Boguszko, M. & Elliott, G. S., Feb 2005, In : Progress in Aerospace Sciences. 41, 2, p. 93-142 50 p.

Research output: Contribution to journalReview article

Rayleigh scattering
Flow fields
Scattering
Detectors
Temperature

Property rights and incentives to invest in seed varieties: Governmental regulations in Argentina

Kesan, J. P. & Gallo, A. A., 2005, In : AgBioForum. 8, 2-3, p. 118-126 9 p.

Research output: Contribution to journalReview article

property rights
Ownership
Argentina
Motivation
Seeds

Review of process for producing corn fiber oil and ethanol from "Quick Fiber"

Dien, B. S., Nagle, N., Singh, V., Moreau, R. A., Tucker, M. P., Nichols, N. N., Johnston, D. B., Cotta, M. A., Hicks, K. B., Nguyen, Q. & Bothast, R. J., Mar 1 2005, In : International Sugar Journal. 107, 1275, p. 187-191 5 p.

Research output: Contribution to journalReview article

Corn Oil
Fermentation
Ethanol
dietary fiber
ethanol

Rotational tomography for 3D reconstruction of the white-light and EUV corona in the post-SOHO era

Frazin, R. A. & Kamalabadi, F., May 1 2005, In : Solar Physics. 228, 1-2, p. 219-237 19 p.

Research output: Contribution to journalReview article

coronas
tomography
corona
solar corona
observatory

Scalable molecular dynamics with NAMD

Phillips, J. C., Braun, R., Wang, W., Gumbart, J., Tajkhorshid, E., Villa, E., Chipot, C., Skeel, R. D., Kalé, L. & Schulten, K., Dec 2005, In : Journal of Computational Chemistry. 26, 16, p. 1781-1802 22 p.

Research output: Contribution to journalReview article

Molecular Dynamics
Molecular dynamics
Molecular graphics
Laptop computers
Pressure control

Scattering of low coherence radiation and applications

Popescu, G. & Dogariu, A., Nov 1 2005, In : EPJ Applied Physics. 32, 2, p. 73-93 21 p.

Research output: Contribution to journalReview article

Scattering
Radiation
radiation
scattering
Polarization

Sociogenomics: Social life in molecular terms

Robinson, G. E., Grozinger, C. M. & Whitfield, C. W., Apr 1 2005, In : Nature Reviews Genetics. 6, 4, p. 257-270 14 p.

Research output: Contribution to journalReview article

Genomics
Molecular Biology
Animal Behavior
Social Behavior
Neurosciences

Stick-slip-slap interface response simulation: Formulation and application of a general joint/interface element

Song, Y., Michael McFarland, D., Bergman, L. A. & Vakakis, A. F., Nov 1 2005, In : CMES - Computer Modeling in Engineering and Sciences. 10, 2, p. 153-170 18 p.

Research output: Contribution to journalReview article

Interface Element
Stick-slip
Friction
Formulation
Simulation

Strained Si, SiGe, and Ge channels for high-mobility metal-oxide- semiconductor field-effect transistors

Lee, M. L., Fitzgerald, E. A., Bulsara, M. T., Currie, M. T. & Lochtefeld, A., Jan 1 2005, In : Journal of Applied Physics. 97, 1, 011101.

Research output: Contribution to journalReview article

metal oxide semiconductors
field effect transistors
histories
augmentation

Supramolecular organization of foldable phenylene ethynylene oligomers

Ray, C. R. & Moore, J. S., Dec 1 2005, In : Advances in Polymer Science. 177, p. 91-149 59 p.

Research output: Contribution to journalReview article

Oligomers
Polymers
Imines
Water
Conformations

Surfactant-directed synthesis and optical properties of one-dimensional plasmonic metallic nanostructures

Murphy, C. J., Sau, T. K., Gole, A. & Orendorff, C. J., May 2005, In : MRS Bulletin. 30, 5, p. 349-355 7 p.

Research output: Contribution to journalReview article

Surface-Active Agents
Nanocrystals
Nanostructures
Surface active agents
Optical properties

The Blaster worm: Then and now

Bailey, M., Cooke, E., Jahanian, F., Watson, D. & Nazario, J., Jul 1 2005, In : IEEE Security and Privacy. 3, 4, p. 26-31 6 p.

Research output: Contribution to journalReview article

The deep Groth Strip Survey. I. The sample

Vogt, N. P., Koo, D. C., Phillips, A. C., Katherine, W. U., Faber, S. M., Willmer, C. N. A., Simard, L., Weiner, B. J., Illingworth, G. D., Gebhardt, K., Gronwall, C., Guzmán, R., Myungshin, I. M., Sarajedini, V., Groth, E. J., Rhodes, J., Brunner, R., Connolly, A., Szalay, A., Kron, R. & 1 others, Blandford, R., Jul 1 2005, In : Astrophysical Journal, Supplement Series. 159, 1, p. 41-59 19 p.

Research output: Contribution to journalReview article

catalogs
strip
galaxies
Hubble Space Telescope
color

The method of proper orthogonal decomposition for dynamical characterization and order reduction of mechanical systems: An overview

Kerschen, G., Golinval, J. C., Vakakis, A. F. & Bergman, L. A., Aug 1 2005, In : Nonlinear Dynamics. 41, 1-3, p. 147-169 23 p.

Research output: Contribution to journalReview article

Order Reduction
Orthogonal Decomposition
Mechanical Systems
Decomposition
Modal analysis

The use of water cooling during the continuous casting of steel and aluminum alloys

Sengupta, J., Thomas, B. G. & Wells, M. A., Jan 2005, In : Metallurgical and Materials Transactions A: Physical Metallurgy and Materials Science. 36 A, 1, p. 187-204 18 p.

Research output: Contribution to journalReview article

liquid cooling
Continuous casting
Alloy steel
Cooling water
aluminum alloys

The weak neutral current of the nucleon

Beck, D. H., Feb 1 2005, In : European Physical Journal A. 24, SUPPL. 1, p. 115-118 4 p.

Research output: Contribution to journalReview article

vector currents
neutral currents
quarks
physics

Tools for the simulation of hard hadronic collisions

Mangano, M. L. & Stelzer, T. J., Dec 1 2005, In : Annual Review of Nuclear and Particle Science. 55, p. 555-588 34 p.

Research output: Contribution to journalReview article

Q factors
quantum chromodynamics
collisions
simulation

Toward a more robust and accurate CEM fast integral equation solver for IC applications

Chew, W. C., Jiang, L. J., Chu, Y. H., Wang, G. L., Chiang, I. T., Pan, Y. C. & Zhao, J. S., Aug 1 2005, In : IEEE Transactions on Advanced Packaging. 28, 3, p. 449-464 16 p.

Research output: Contribution to journalReview article

Integral equations
Networks (circuits)
Laplace equation
Method of moments
Convolution

Trajectory and system analysis for outer-planet solar electric propulsion missions

Woo, B., Coverstone, V. L., Hartmann, J. W. & Cupples, M., Jan 1 2005, In : Journal of Spacecraft and Rockets. 42, 3, p. 510-516 7 p.

Research output: Contribution to journalReview article

solar electric propulsion
trajectory analysis
flight time
Electric propulsion
systems analysis

Transcriptional regulation by the numbers: Applications

Bintu, L., Buchler, N. E., Garcia, H. G., Gerland, U., Hwa, T., Kondev, J., Kuhlman, T. E. & Phillips, R., Apr 2005, In : Current Opinion in Genetics and Development. 15, 2, p. 125-135 11 p.

Research output: Contribution to journalReview article

Gene Expression Regulation
Thermodynamics
Transcription Factors
Gene Expression
Heparan Sulfate Proteoglycans
Critical Pathways
Mesoderm
Intestinal Mucosa
Small Intestine
Testing
Demonstrations
Photosynthesis
carbon dioxide
Air
photosynthesis
canopy

Where rivers and oceans collide

Crockett, J. S., Nittrouer, C. A., Ogston, A. S., Sternberg, R. W., Driscoll, N. W., Babcock, J., Milliman, J. D., Slingerland, R., Naar, D. F., Donahue, B., Walsh, J. P., Dietrich, W., Parker, G., Bera, M., Davies, H., Harris, P., Goni, M., Aller, R. & Aller, J., Jan 2005, In : Eos. 86, 3, p. 25-32 8 p.

Research output: Contribution to journalReview article

estuary
ocean
river

Wind-induced self-excited loads on bridges

Chen, Z. Q., Yu, X. D., Yang, G. & Spencer, B. F., Dec 1 2005, In : Journal of Structural Engineering. 131, 12, p. 1783-1793 11 p.

Research output: Contribution to journalReview article

Aerodynamics
Derivatives
Fast Fourier transforms
Wind tunnels
Experiments

Zooming in on ATP hydrolysis in F1

Dittrich, M. & Schulten, K., Dec 1 2005, In : Journal of Bioenergetics and Biomembranes. 37, 6, p. 441-444 4 p.

Research output: Contribution to journalReview article

Proton-Translocating ATPases
Catalysis
Arginine
Hydrolysis
Adenosine Triphosphate
2006

3D object modeling and recognition using local affine-invariant image descriptors and multi-view spatial constraints

Rothganger, F., Lazebnik, S., Schmid, C. & Ponce, J., Mar 1 2006, In : International Journal of Computer Vision. 66, 3, p. 231-259 29 p.

Research output: Contribution to journalReview article

Image recognition

An overview of the minisymposium on extreme ship dynamics presented at the 2005 SIAM conference on applications of dynamical systems

McCue, L., Alford, L., Belknap, W., Bulian, G., Delorme, L., Francescutto, A., Lugni, C., Troesch, A. & Vakakis, A., Jan 2006, In : Marine Technology and SNAME News. 43, 1, p. 55-61 7 p.

Research output: Contribution to journalReview article

Parametric oscillators
Seakeeping
mathematics
Ships
Dynamical systems

A power grid for the hydrogen economy

Grant, P. M., Starr, C. & Overbye, T. J., Jul 2006, In : Scientific American. 295, 1, p. 76-83 8 p.

Research output: Contribution to journalReview article

Hydrogen
Nitrogen
Niobium
Nuclear Power Plants
Electricity

Application of three scattering models to characterization of solid tumors in mice

Oelze, M. L. & O'Brien, W. D., Apr 2006, In : Ultrasonic Imaging. 28, 2, p. 83-96 14 p.

Research output: Contribution to journalReview article

mice
tumors
Sarcoma
Cell Nucleus
Carcinoma

Binary quasars in the sloan digital sky survey: Evidence for excess clustering on small scales

Hennawi, J. F., Strauss, M. A., Oguri, M., Inada, N., Richards, G. T., Pindor, B., Schneider, D. P., Becker, R. H., Gregg, M. D., Hall, P. B., Johnston, D. E., Fan, X., Burles, S., Schlegel, D. J., Gunn, J. E., Lupton, R. H., Bahcall, N. A., Brunner, R. J. & Brinkmann, J., Jan 1 2006, In : Astronomical Journal. 131, 1, p. 1-23 23 p.

Research output: Contribution to journalReview article

quasars
autocorrelation
power law
galaxies
actuators

Biomolecule large-amplitude motion and solvation dynamics: Modelling and probes from THz to X-rays

Leitner, D. M., Havenith, M. & Gruebele, M., Oct 1 2006, In : International Reviews in Physical Chemistry. 25, 4, p. 553-582 30 p.

Research output: Contribution to journalReview article

Solvation
Biomolecules
solvation
X rays
probes

Biosynthetic inorganic chemistry

Lu, Y., Sep 2 2006, In : Angewandte Chemie - International Edition. 45, 34, p. 5588-5601 14 p.

Research output: Contribution to journalReview article

Biological systems
Metalloproteins
Inorganic compounds
Metal ions
Ligands

Bound-state effects on light-element abundances in gravitino dark matter scenarios

Cyburt, R. H., Ellis, J., Fields, B. D., Olive, K. A. & Spanos, V. C., Nov 1 2006, In : Journal of Cosmology and Astroparticle Physics. 11, 014.

Research output: Contribution to journalReview article

gravitinos
light elements
dark matter
nuclear fusion
decay

Bridging Conformational Dynamics and Function Using Single-Molecule Spectroscopy

Myong, S., Stevens, B. C. & Ha, T., Apr 1 2006, In : Structure. 14, 4, p. 633-643 11 p.

Research output: Contribution to journalReview article

Cruciform DNA
Catalytic RNA
Transfer RNA
Ribosomes
Mutagenesis

Can improvement in photosynthesis increase crop yields?

Long, S. P., Zhu, X. G., Naidu, S. L. & Ort, D. R., Mar 1 2006, In : Plant, Cell and Environment. 29, 3, p. 315-330 16 p.

Research output: Contribution to journalReview article

Photosynthesis
crop yield
photosynthesis
Light
Biomass

Canine nutritional model: Influence of age, diet, and genetics on health and well-being

Swanson, K. S. & Schook, L. B., May 1 2006, In : Current Nutrition and Food Science. 2, 2, p. 115-126 12 p.

Research output: Contribution to journalReview article

Canidae
Diet
Dogs
dogs
Health

Charged point defects in semiconductors

Seebauer, E. G. & Kratzer, M. C., Dec 15 2006, In : Materials Science and Engineering R: Reports. 55, 3-6, p. 57-149 93 p.

Research output: Contribution to journalReview article

Point defects
Semiconductor materials
Defects
Surface defects
Thermal diffusion

Chemical countermeasures for the control of bacterial biofilms: Effective compounds and promising targets

Musk, D. J. & Hergenrother, P. J., Jul 1 2006, In : Current Medicinal Chemistry. 13, 18, p. 2163-2177 15 p.

Research output: Contribution to journalReview article

Biofilms
Quorum Sensing
Infection
Bacterial Infections
Bacteria

Computational prediction of flow-generated sound

Wang, M., Freund, J. B. & Lele, S. K., Feb 21 2006, In : Annual Review of Fluid Mechanics. 38, p. 483-512 30 p.

Research output: Contribution to journalReview article

flow noise
computational aeroacoustics
noise prediction
aeroacoustics
acoustics

Diffuse fields in ultrasonics and seismology

Weaver, R. L. & Lobkis, O. I., Jan 1 2006, In : Geophysics. 71, 4, p. SI5-SI9

Research output: Contribution to journalReview article

Seismology
Ultrasonic waves
seismology
Green function
Green's function