Research Output 1965 2020

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2018

Advancing Metabolic Engineering of Saccharomyces cerevisiae Using the CRISPR/Cas System

Lian, J., HamediRad, M. & Zhao, H., Sep 2018, In : Biotechnology Journal. 13, 9, 1700601.

Research output: Contribution to journalReview article

Clustered Regularly Interspaced Short Palindromic Repeats
Metabolic Engineering
Saccharomyces cerevisiae
Gene Knockout Techniques
Biotechnology

A new era for electron bifurcation

Peters, J. W., Beratan, D. N., Bothner, B., Dyer, R. B., Harwood, C. S., Heiden, Z. M., Hille, R., Jones, A. K., King, P. W., Lu, Y., Lubner, C. E., Minteer, S. D., Mulder, D. W., Raugei, S., Schut, G. J., Seefeldt, L. C., Tokmina-Lukaszewska, M., Zadvornyy, O. A., Zhang, P. & Adams, M. WW., Dec 2018, In : Current Opinion in Chemical Biology. 47, p. 32-38 7 p.

Research output: Contribution to journalReview article

Electrons
Biochemical Phenomena
Anaerobiosis
Electron Transport Complex III
Redox reactions

A promising trend for field information collection: An air-ground multi-sensor monitoring system

Zhang, Y., Chen, D., Wang, S. & Tian, L., Jun 2018, In : Information Processing in Agriculture. 5, 2, p. 224-233 10 p.

Research output: Contribution to journalReview article

Unmanned aerial vehicles (UAV)
monitoring system
sensors (equipment)
Wireless sensor networks
Remote sensing

A review of data-driven building energy consumption prediction studies

Amasyali, K. & El-Gohary, N., Jan 1 2018, In : Renewable and Sustainable Energy Reviews. 81, p. 1192-1205 14 p.

Research output: Contribution to journalReview article

Energy utilization
Learning algorithms
Learning systems
Conservation
Planning

A survey of statistical model checking

Agha, G. & Palmskog, K., Jan 2018, In : ACM Transactions on Modeling and Computer Simulation. 28, 1, 6.

Research output: Contribution to journalReview article

Model checking
Model Checking
Statistical Model
Stochastic systems
Stochastic Systems
Twinning
twinning
Metals
predictions
metals

Attitudes and Attitude Change

Albarracin, D. & Shavitt, S., Jan 4 2018, In : Annual review of psychology. 69, p. 299-327 29 p.

Research output: Contribution to journalReview article

Social Media
Language Development
Human Development
Research
Emotions

Big data and extreme-scale computing: Pathways to Convergence-Toward a shaping strategy for a future software and data ecosystem for scientific inquiry

Asch, M., Moore, T., Badia, R., Beck, M., Beckman, P., Bidot, T., Bodin, F., Cappello, F., Choudhary, A., de Supinski, B., Deelman, E., Dongarra, J., Dubey, A., Fox, G., Fu, H., Girona, S., Gropp, W., Heroux, M., Ishikawa, Y., Keahey, K. & 19 others, Keyes, D., Kramer, W., Lavignon, J. F., Lu, Y., Matsuoka, S., Mohr, B., Reed, D., Requena, S., Saltz, J., Schulthess, T., Stevens, R., Swany, M., Szalay, A., Tang, W., Varoquaux, G., Vilotte, J. P., Wisniewski, R., Xu, Z. & Zacharov, I., Jul 1 2018, In : International Journal of High Performance Computing Applications. 32, 4, p. 435-479 45 p.

Research output: Contribution to journalReview article

Ecosystem
Ecosystems
Pathway
Extremes
Software

Biocatalysis for the synthesis of pharmaceuticals and pharmaceutical intermediates

Sun, H., Zhang, H., Ang, E. L. & Zhao, H., Apr 1 2018, In : Bioorganic and Medicinal Chemistry. 26, 7, p. 1275-1284 10 p.

Research output: Contribution to journalReview article

Biocatalysis
Enzymes
Pharmaceutical Preparations
Oxidoreductases
Protein Engineering

Bioengineered Liver Models for Drug Testing and Cell Differentiation Studies

Underhill, G. H. & Khetani, S. R., Mar 2018, In : CMGH. 5, 3, p. 426-439.e1

Research output: Contribution to journalReview article

Cell Differentiation
Liver
Pharmaceutical Preparations
Hepatocytes
Cell- and Tissue-Based Therapy

Biomass and biofuels in China: Toward bioenergy resource potentials and their impacts on the environment

Qin, Z., Zhuang, Q., Cai, X., He, Y., Huang, Y., Jiang, D., Lin, E., Liu, Y., Tang, Y. & Wang, M. Q., Feb 2018, In : Renewable and Sustainable Energy Reviews. 82, p. 2387-2400 14 p.

Research output: Contribution to journalReview article

Biofuels
Crops
Biomass
Ecosystems
Ethanol

Biophysics of Tumor Microenvironment and Cancer Metastasis - A Mini Review

Emon, B., Bauer, J., Jain, Y., Jung, B. & Saif, T., Jan 1 2018, In : Computational and Structural Biotechnology Journal. 16, p. 279-287 9 p.

Research output: Contribution to journalReview article

Biophysics
Tumor Microenvironment
Tumors
Cells
Neoplasm Metastasis

Bioprocess engineering for biohythane production from low-grade waste biomass: technical challenges towards scale up

Liu, Z., Si, B., Li, J., He, J., Zhang, C., Lu, Y., Zhang, Y. & Xing, X. H., Apr 2018, In : Current Opinion in Biotechnology. 50, p. 25-31 7 p.

Research output: Contribution to journalReview article

Biomass
Fermentation
Biological Phenomena
Biofuels
Biogas

Bone regeneration strategies: Engineered scaffolds, bioactive molecules and stem cells current stage and future perspectives

Ho-Shui-Ling, A., Bolander, J., Rustom, L. E., Johnson, A. W., Luyten, F. P. & Picart, C., Oct 2018, In : Biomaterials. 180, p. 143-162 20 p.

Research output: Contribution to journalReview article

Bone Substitutes
Bone Regeneration
Stem cells
Scaffolds
Bone

Breaking the Axial Diffraction Limit: A Guide to Axial Super-Resolution Fluorescence Microscopy

Liu, W., Toussaint, K. C., Okoro, C., Zhu, D., Chen, Y., Kuang, C. & Liu, X., Aug 2018, In : Laser and Photonics Reviews. 12, 8, 1700333.

Research output: Contribution to journalReview article

Fluorescence microscopy
Diffraction
microscopy
fluorescence
diffraction

Brittle failure of rock: A review and general linear criterion

Labuz, J. F., Zeng, F., Makhnenko, R. & Li, Y., Jul 2018, In : Journal of Structural Geology. 112, p. 7-28 22 p.

Research output: Contribution to journalReview article

brittle failure
rock
tensile strength
friction
compression

CAMP, Ca2+, pHi, and NO Regulate H-like Cation Channels That Underlie Feeding and Locomotion in the Predatory Sea Slug Pleurobranchaea californica

Green, D. J., Huang, R. C., Sudlow, L., Hatcher, N., Potgieter, K., McCrohan, C., Lee, C., Romanova, E. V., Sweedler, J. V., Gillette, M. L. & Gillette, R., Aug 15 2018, In : ACS Chemical Neuroscience. 9, 8, p. 1986-1993 8 p.

Research output: Contribution to journalReview article

Pleurobranchaea
Gastropoda
Locomotion
Nitric Oxide Synthase
Oceans and Seas

Cell-Extracellular Matrix Mechanobiology: Forceful Tools and Emerging Needs for Basic and Translational Research

Holle, A. W., Young, J. L., Van Vliet, K. J., Kamm, R. D., Discher, D., Janmey, P., Spatz, J. P. & Saif, T., Jan 10 2018, In : Unknown Journal. 18, 1, p. 1-8 8 p.

Research output: Contribution to journalReview article

emerging
Mechanics
cues
Signal transduction
Neurology

Circadian redox rhythms in the regulation of neuronal excitability

Bothwell, M. Y. & Gillette, M. L., May 1 2018, In : Free Radical Biology and Medicine. 119, p. 45-55 11 p.

Research output: Contribution to journalReview article

Circadian Rhythm
Oxidation-Reduction
Suprachiasmatic Nucleus
Membranes
Ion Channels

Continuous relaxation spectra for constitutive models in medium-amplitude oscillatory shear

Martinetti, L., Soulages, J. M. & Ewoldt, R. H., Sep 1 2018, In : Journal of Rheology. 62, 5, p. 1271-1298 28 p.

Research output: Contribution to journalReview article

Constitutive models
Relaxation time
Sodium borate
shear
relaxation time

Crowdsourcing Methods for Data Collection in Geophysics: State of the Art, Issues, and Future Directions

Zheng, F., Tao, R., Maier, H. R., See, L., Savic, D., Zhang, T., Chen, Q., Assumpção, T. H., Yang, P., Heidari, B., Rieckermann, J., Minsker, B., Bi, W., Cai, X., Solomatine, D. & Popescu, I., Dec 2018, In : Reviews of Geophysics. 56, 4, p. 698-740 43 p.

Research output: Contribution to journalReview article

geophysics
data acquisition
geography
hazard management
privacy

CryoEM-based hybrid modeling approaches for structure determination

Cassidy, C. K., Himes, B. A., Luthey-Schulten, Z. A. & Zhang, P., Jun 2018, In : Current Opinion in Microbiology. 43, p. 14-23 10 p.

Research output: Contribution to journalReview article

Cryoelectron Microscopy

Current technologies of electrochemical immunosensors: Perspective on signal amplification

Cho, I. H., Lee, J., Kim, J., Kang, M. S., Paik, J. K., Ku, S., Cho, H. M., Irudayaraj, J. & Kim, D. H., Jan 12 2018, In : Sensors (Switzerland). 18, 1, 207.

Research output: Contribution to journalReview article

Immunosensors
Nanostructures
Biosensing Techniques
Nanostructured materials
Biosensors

Designed transition metal catalysts for intracellular organic synthesis

Bai, Y., Chen, J. & Zimmerman, S. C., Mar 7 2018, In : Chemical Society Reviews. 47, 5, p. 1811-1821 11 p.

Research output: Contribution to journalReview article

Transition metals
Synthetic metals
Catalysts
Cytotoxins
Functional groups

Detection and digital resolution counting of nanoparticles with optical resonators and applications in biosensing

Aguirre, M. Á., Long, K. D., Li, N., Manoto, S. L. & Cunningham, B. T., Jun 1 2018, In : Chemosensors. 6, 2, 13.

Research output: Contribution to journalReview article

Optical resonators
optical resonators
counting
Nanoparticles
nanoparticles

Deterministic Design of Chemistry and Mesostructure in Li-Ion Battery Electrodes

Braun, P. V. & Cook, J. B., Apr 24 2018, In : ACS Nano. 12, 4, p. 3060-3064 5 p.

Research output: Contribution to journalReview article

electric batteries
chemistry
Electrodes
electrodes
ions

Diffuse-Interface Capturing Methods for Compressible Two-Phase Flows

Saurel, R. & Pantano, C., Jan 5 2018, In : Annual Review of Fluid Mechanics. 50, p. 105-130 26 p.

Research output: Contribution to journalReview article

two phase flow
fluids
compressible flow
equations of state
plastics

Earth BioGenome Project: Sequencing life for the future of life

Lewin, H. A., Robinson, G. E., Kress, W. J., Baker, W. J., Coddington, J., Crandall, K. A., Durbin, R., Edwards, S. V., Forest, F., Gilbert, M. T. P., Goldstein, M. M., Grigoriev, I. V., Hackett, K. J., Haussler, D., Jarvis, E. D., Johnson, W. E., Patrinos, A., Richards, S., Castilla-Rubio, J. C., Van Sluys, M. A. & 4 others, Soltis, P. S., Xu, X., Yang, H. & Zhang, G., Apr 24 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 17, p. 4325-4333 9 p.

Research output: Contribution to journalReview article

Biodiversity
Ecosystem
Planets
Endangered Species
Information Dissemination

Editorial: Building strategies for porcine cancer models

Collares, T., Seixas, F. K., Rund, L. A. & Schook, L. B., Oct 2 2018, In : Frontiers in Genetics. 9, OCT, 377.

Research output: Contribution to journalReview article

Swine
Neoplasms

Elastic Fluctuations and Structural Heterogeneities in Metallic Glasses

Liu, C. & Maaß, R., Jul 25 2018, In : Advanced Functional Materials. 28, 30, 1800388.

Research output: Contribution to journalReview article

Metallic glass
metallic glasses
casts
Shear bands
Crystallization

Emergence of two near-infrared windows for in vivo and intraoperative SERS

Lane, L. A., Xue, R. & Nie, S., Aug 2018, In : Current Opinion in Chemical Biology. 45, p. 95-103 9 p.

Research output: Contribution to journalReview article

Raman Spectrum Analysis
Raman scattering
Tissue
Infrared radiation
Light

Engineering Polymersomes for Diagnostics and Therapy

Leong, J., Teo, J. Y., Aakalu, V. K., Yang, Y. Y. & Kong, H., Apr 25 2018, In : Advanced Healthcare Materials. 7, 8, 1701276.

Research output: Contribution to journalReview article

Imaging techniques
Molecules
Controllability
Pharmaceutical Preparations
Self assembly

Engineering the Surface of Therapeutic "living" Cells

Park, J., Andrade, B., Seo, Y., Kim, M. J., Zimmerman, S. C. & Kong, H. J., Feb 28 2018, In : Chemical reviews. 118, 4, p. 1664-1690 27 p.

Research output: Contribution to journalReview article

Cell engineering
Drug Carriers
Adhesion
Tissue
Nanoparticles

Escapement mechanisms and the conversion of disequilibria; the engines of creation

Branscomb, E., Biancalani, T., Goldenfeld, N. & Russell, M., Mar 17 2018, In : Physics Reports. 677, p. 1-60 60 p.

Research output: Contribution to journalReview article

engines
cascades
free energy
energy
causes

Evaluation of low-temperature cracking performance of asphalt pavements using Acoustic Emission: A review

Behnia, B., Buttlar, W. & Reis, H., Feb 21 2018, In : Applied Sciences (Switzerland). 8, 2, 306.

Research output: Contribution to journalReview article

asphalt
pavements
Asphalt pavements
acoustic emission
Acoustic emissions
Biocatalysis
Enzymes
Synthetic Biology
Metabolic engineering
Metabolic Engineering

Fatigue behavior of high-entropy alloys: A review

Chen, P. Y., Lee, C., Wang, S. Y., Seifi, M., Lewandowski, J. J., Dahmen, K. A., Jia, H. L., Xie, X., Chen, B. L., Yeh, J. W., Tsai, C. W., Yuan, T. & Liaw, P. K., Feb 1 2018, In : Science China Technological Sciences. 61, 2, p. 168-178 11 p.

Research output: Contribution to journalReview article

Entropy
Fatigue of materials
Fatigue crack propagation
Bending (deformation)
Solid solutions

From High-Level Specification to High-Performance Code

Franchetti, F., Moura, J. M. F., Padua, D. A. & Dongarra, J., Nov 2018, In : Proceedings of the IEEE. 106, 11, p. 1875-1878 4 p., 8510981.

Research output: Contribution to journalReview article

Computer systems
Specifications
Computer architecture
Particle accelerators

Gasification of biowaste: A critical review and outlooks

Watson, J., Zhang, Y., Si, B., Chen, W. T. & de Souza, R., Mar 2018, In : Renewable and Sustainable Energy Reviews. 83, p. 1-17 17 p.

Research output: Contribution to journalReview article

Gasification
Steam
Gas heating
Tar
Gases

Genetic accommodation and the role of ancestral plasticity in the evolution of insect eusociality

Jones, B. M. & Robinson, G. E., Dec 2018, In : Journal of Experimental Biology. 221, 23, jeb153163.

Research output: Contribution to journalReview article

eusociality
plasticity
Insects
insect
Phenotype

How does solvation in the cell affect protein folding and binding?

Davis, C. M., Gruebele, M. & Sukenik, S., Feb 2018, In : Current Opinion in Structural Biology. 48, p. 23-29 7 p.

Research output: Contribution to journalReview article

Protein Folding
Protein Binding
Proteins
Membrane Proteins

How many human proteoforms are there?

Aebersold, R., Agar, J. N., Amster, I. J., Baker, M. S., Bertozzi, C. R., Boja, E. S., Costello, C. E., Cravatt, B. F., Fenselau, C., Garcia, B. A., Ge, Y., Gunawardena, J., Hendrickson, R. C., Hergenrother, P. J., Huber, C. G., Ivanov, A. R., Jensen, O. N., Jewett, M. C., Kelleher, N. L., Kiessling, L. L. & 33 others, Krogan, N. J., Larsen, M. R., Loo, J. A., Ogorzalek Loo, R. R., Lundberg, E., Maccoss, M. J., Mallick, P., Mootha, V. K., Mrksich, M., Muir, T. W., Patrie, S. M., Pesavento, J. J., Pitteri, S. J., Rodriguez, H., Saghatelian, A., Sandoval, W., Schlüter, H., Sechi, S., Slavoff, S. A., Smith, L. M., Snyder, M. P., Thomas, P. M., Uhlén, M., Van Eyk, J. E., Vidal, M., Walt, D. R., White, F. M., Williams, E. R., Wohlschlager, T., Wysocki, V. H., Yates, N. A., Young, N. L. & Zhang, B., Feb 14 2018, In : Nature chemical biology. 14, 3, p. 206-214 9 p.

Research output: Contribution to journalReview article

Post Translational Protein Processing
Proteins
Proteome
Proteomics
Amino Acid Sequence

Inferring Nighttime Ionospheric Parameters with the Far Ultraviolet Imager Onboard the Ionospheric Connection Explorer

Kamalabadi, F., Qin, J., Harding, B. J., Iliou, D., Makela, J. J., Meier, R. R., England, S. L., Frey, H. U., Mende, S. B. & Immel, T. J., Jun 1 2018, In : Space Science Reviews. 214, 4, 70.

Research output: Contribution to journalReview article

ionospherics
ionosphere
ionospheres
oxygen
F region

Infrared Spectroscopic Imaging Advances as an Analytical Technology for Biomedical Sciences

Wrobel, T. P. & Bhargava, R., Feb 6 2018, In : Analytical chemistry. 90, 3, p. 1444-1463 20 p.

Research output: Contribution to journalReview article

Infrared Spectrophotometry
Biomedical Technology
Biomedical Research
Light

Innovations in CRISPR technology

Brooks, A. K. & Gaj, T., Aug 2018, In : Current Opinion in Biotechnology. 52, p. 95-101 7 p.

Research output: Contribution to journalReview article

Clustered Regularly Interspaced Short Palindromic Repeats
Innovation
Technology
Genes
Gene therapy

Intraoperative fluorescence imaging in thoracic surgery

Newton, A. D., Predina, J. D., Nie, S., Low, P. S. & Singhal, S., Aug 1 2018, In : Journal of Surgical Oncology. 118, 2, p. 344-355 12 p.

Research output: Contribution to journalReview article

Optical Imaging
Thoracic Surgery
Folic Acid
Clinical Trials, Phase I
Indocyanine Green
Energy Transfer
dynamical systems
Energy transfer
energy transfer
nonlinearity

Joint spectral characterization of photon-pair sources

Zielnicki, K., Garay-Palmett, K., Cruz-Delgado, D., Cruz-Ramirez, H., O’Boyle, M. F., Fang, B., Lorenz, V. O., U’Ren, A. B. & Kwiat, P. G., Jun 7 2018, In : Journal of Modern Optics. 65, 10, p. 1141-1160 20 p.

Research output: Contribution to journalReview article

photons
four-wave mixing
purity
monochromators
stimulated emission

Labeling for Quantitative Comparison of Imaging Measurements in Vitro and in Cells

Davis, C. M. & Gruebele, M., Apr 3 2018, In : Biochemistry. 57, 13, p. 1929-1938 10 p.

Research output: Contribution to journalReview article

Cytology
Labeling
RNA
Protein folding
Imaging techniques

Light-emitting diodes of colloidal quantum dots and nanorod heterostructures for future emissive displays

Jiang, Y., Cho, S. Y. & Shim, M., Jan 1 2018, In : Journal of Materials Chemistry C. 6, 11, p. 2618-2634 17 p.

Research output: Contribution to journalReview article

Nanorods
Semiconductor quantum dots
Light emitting diodes
Heterojunctions
Display devices