Research Output

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2016

A zero-sum game between the network designer and an adversary in consensus protocols

El Chamie, M. & Başar, T., Jan 1 2016, Annals of the International Society of Dynamic Games. Birkhauser, p. 117-137 21 p. (Annals of the International Society of Dynamic Games; vol. 14).

Research output: Chapter in Book/Report/Conference proceedingChapter

Biocatalysis for Drug Discovery and Development

Liang, Y., Zhang, M. M., Ang, E. L. & Zhao, H., May 13 2016, Green Biocatalysis. Wiley, p. 421-455 35 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biochemical production of bioalcohols

Melikoglu, M., Singh, V., Leu, S. Y., Webb, C. & Lin, C. S. K., Jan 1 2016, Handbook of Biofuels Production: Processes and Technologies: Second Edition. Elsevier Inc., p. 237-258 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Ceramic for Environmental Systems

Wang, L., Imanaka, N., Kriven, W. M., Fukushima, M. & Kale, G., May 31 2016, Ceramic Transactions. Wiley-Blackwell, Vol. 257. p. 1-158 158 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Choice, preference, and utility: Probabilistic and deterministic representations

Marley, A. A. J. & Regenwetter, M., Dec 15 2016, Foundations and Methodology. Cambridge University Press, Vol. 1. p. 374-453 80 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Combined and iterative use of computational design and directed evolution for protein-ligand binding design

Wang, M. & Zhao, H., May 1 2016, Methods in Molecular Biology. Humana Press Inc., p. 139-153 15 p. (Methods in Molecular Biology; vol. 1414).

Research output: Chapter in Book/Report/Conference proceedingChapter

Compiler Technology

Chung, W. H. J., Lyu, Y. H., Sung, I. J. R., Lee, Y. W. & Hwu, W. M. W., Jan 1 2016, Heterogeneous System Architecture: A New Compute Platform Infrastructure. Elsevier Inc., p. 97-129 33 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Crack propagation analysis with automatic load balancing

Lawlor, O. S., Breitenfeld, M. S., Geubelle, P. H. & Zheng, G., Apr 19 2016, Parallel Science and Engineering Applications: The Charm++ Approach. CRC Press, p. 183-206 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Decibel: The relational dataset branching system

Maddox, M., Madden, S., Goehring, D., Parameswaran, A., Elmore, A. J. & Deshpande, A., Jan 1 2016, Proceedings of the VLDB Endowment. 9 ed. Association for Computing Machinery, p. 624-635 12 p. (Proceedings of the VLDB Endowment; vol. 9, no. 9).

Research output: Chapter in Book/Report/Conference proceedingChapter

Designing Charm++ programs

Kale, L. V., Apr 19 2016, Parallel Science and Engineering Applications: The Charm++ Approach. CRC Press, p. 17-33 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Design of Heteronuclear Metalloenzymes

Bhagi-Damodaran, A., Hosseinzadeh, P., Mirts, E., Reed, J., Petrik, I. D. & Lu, Y., Jan 1 2016, Methods in Enzymology. Academic Press Inc., p. 501-537 37 p. (Methods in Enzymology; vol. 580).

Research output: Chapter in Book/Report/Conference proceedingChapter

Discovering concept-level event associations from a text stream

Ge, T., Cui, L., Ji, H., Chang, B. & Sui, Z., Dec 1 2016, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Springer-Verlag Berlin Heidelberg, p. 413-424 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10102).

Research output: Chapter in Book/Report/Conference proceedingChapter

Efficient direct mining of selective discriminative patterns for classification

Cheng, H., Han, J., Yan, X. & Yu, P. S., Apr 19 2016, Contrast Data Mining: Concepts, Algorithms, and Applications. CRC Press, p. 39-58 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Engineered minicellulosomes for consolidated bioprocessing

Liang, Y., Ang, E. L. & Zhao, H., Jul 11 2016, Handbook of Carbohydrate-Modifying Biocatalysts. Pan Stanford Publishing Pte. Ltd., Vol. 2. p. 965-992 28 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Evolutionary and heuristic methods applied to problems in optimal control

Conway, B. A., Jan 1 2016, Springer Optimization and Its Applications. Springer International Publishing, p. 117-143 27 p. (Springer Optimization and Its Applications; vol. 116).

Research output: Chapter in Book/Report/Conference proceedingChapter

Field performance evaluations of large sized unconventional and recycled aggregates for subgrade improvement

Kazmee, H., Tutumluer, E. & Mishra, D., Sep 15 2016, The Roles of Accelerated Pavement Testing in Pavement Sustainability: Engineering, Environment, and Economics. Springer International Publishing, p. 877-890 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Free D-aspartate in nonmammalian animals: Detection, localization, metabolism, and function

Patel, A. V., Kawai, T., Rubakhin, S. & Sweedler, J. V., Jan 1 2016, D-Amino Acids: Physiology, Metabolism, and Application. Springer Japan, p. 173-197 25 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Gene delivery method using photo-responsive poly(β-amino ester) as vectors

Zheng, N., Liu, Y. & Cheng, J., Jan 1 2016, Methods in Molecular Biology. Humana Press Inc., p. 259-267 9 p. (Methods in Molecular Biology; vol. 1445).

Research output: Chapter in Book/Report/Conference proceedingChapter

High-Efficiency Genome Editing of Streptomyces Species by an Engineered CRISPR/Cas System

Wang, Y., Cobb, R. E. & Zhao, H., 2016, Methods in Enzymology. O'Connor, S. E. (ed.). Academic Press Inc., p. 271-284 14 p. (Methods in Enzymology; vol. 575).

Research output: Chapter in Book/Report/Conference proceedingChapter

Highly efficient SiRNA delivery mediated by cationic helical polypeptides and polypeptide-based nanosystems

Yin, L., Zheng, N. & Cheng, J., Jan 1 2016, Methods in Molecular Biology. Humana Press Inc., 1 p. (Methods in Molecular Biology; vol. 1364).

Research output: Chapter in Book/Report/Conference proceedingChapter

High-throughput screening or selection methods for evolutionary enzyme engineering

Shi, S., Zhang, H., Ang, E. L. & Zhao, H., May 17 2016, Understanding Enzymes: Function, Design, Engineering and Analysis. Pan Stanford Publishing Pte. Ltd., p. 707-744 38 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

How Products Satisfy Needs Beyond the Functional: Empathy Supporting Consumer-Product Relationships

McDonagh, D. C., Jun 21 2016, Routledge Companion to Design Studies. Sparke, P. & Fisher, F. (eds.). New York: Routledge, p. 218-241 (Routledge Art History and Visual Studies Companions).

Research output: Chapter in Book/Report/Conference proceedingChapter

In-situ validation of three-dimensional pavement finite element models

Gungor, O. E., Al-Qadi, I. L., Gamez, A. & Hernandez, J. A., Sep 15 2016, The Roles of Accelerated Pavement Testing in Pavement Sustainability: Engineering, Environment, and Economics. Springer International Publishing, p. 145-159 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Intentional nonlinearity for design of micro/nanomechanical resonators

Cho, H., Bergman, L. A., Yu, M. F. & Vakakis, A. F., Jan 12 2016, Nanocantilever Beams: Modeling, Fabrication and Applications. Pan Stanford Publishing Pte. Ltd., p. 137-192 56 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Interpolated Wave Functions for Nonadiabatic Simulations with the Fixed-Node Quantum Monte Carlo Method

Tubman, N. M., Yang, Y., Hammes-Schiffer, S. & Ceperley, D. M., Jan 1 2016, Recent Progress in Quantum Monte Carlo. Roy, P-N., Mitas, L. & Tanaka, S. (eds.). American Chemical Society, p. 47-61 15 p. (ACS Symposium Series; vol. 1234).

Research output: Chapter in Book/Report/Conference proceedingChapter

Introduction

Hwu, W. M. W., Jan 1 2016, Heterogeneous System Architecture: A New Compute Platform Infrastructure. Elsevier Inc., p. 1-5 5 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Labour-management partnership in the USA: Islands of success in a hostile context

Eaton, A. E., Cutcher-Gershenfeld, J. & Rubinstein, S. A., Jan 1 2016, Developing Positive Employment Relations: International Experiences of Labour Management Partnership. Palgrave Macmillan UK, p. 125-153 29 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Mass spectrometry of proteins

Romanova, E. V., Annangudi, S. P., Tai, H. C. & Sweedler, J. V., Jan 1 2016, The Curated Reference Collection in Neuroscience and Biobehavioral Psychology. Elsevier Science Ltd., p. 681-687 7 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Mechanical properties of high-entropy alloys

Diao, H., Xie, X., Sun, F., Dahmen, K. A. & Liaw, P. K., Jan 1 2016, High-Entropy Alloys: Fundamentals and Applications. Springer International Publishing, p. 181-236 56 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Microfluidic methods in single cell biology

Mukherjee, A. & Schroeder, C. M., Jan 1 2016, Microfluidic Methods for Molecular Biology. Springer International Publishing, p. 19-54 36 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Microfluidics for Studying Pharmacodynamics of Antibiotics

Mohan, R., Desai, A. V., Sanpitakseree, C. & Kenis, P. J. A., Apr 29 2016, Micro- and Nanosystems for Biotechnology. Wiley, p. 177-202 26 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Microscopic Characterization of Membrane Transporter Function by In Silico Modeling and Simulation

Vermaas, J. V., Trebesch, N., Mayne, C. G., Thangapandian, S., Shekhar, M., Mahinthichaichan, P., Baylon, J. L., Jiang, T., Wang, Y., Muller, M. P., Shinn, E., Zhao, Z., Wen, P. C. & Tajkhorshid, E., 2016, Methods in Enzymology. Academic Press Inc., p. 373-428 56 p. (Methods in Enzymology; vol. 578).

Research output: Chapter in Book/Report/Conference proceedingChapter

Models of Communication

Mcphee, R. D. & Poole, M. S., Oct 23 2016, The International Encyclopedia of Communication Theory and Philosophy. Jensen, K. B., Rothenbuhler, E. W., Pooley, J. D. & Craig, R. T. (eds.). John Wiley & Sons, Inc., p. 1-16

Research output: Chapter in Book/Report/Conference proceedingChapter

Molecular imaging with spectral CT nanoprobes

Pan, D., Schmieder, A. H., SenPan, A., Yang, X., Wickline, S. A., Roessl, E., Proksa, R., Schirra, C. O. & Lanza, G. M., Jan 1 2016, Design and Applications of Nanoparticles in Biomedical Imaging. Springer International Publishing, p. 385-402 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Motion planning

Kavraki, L. E. & Lavalle, S. M., Jan 1 2016, Springer Handbook of Robotics. Springer International Publishing, p. 139-161 23 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Multi-Hazard approaches to civil infrastructure engineering: Mitigating risks and promoting resilence

Gardoni, P. & LaFave, J. M., Jan 1 2016, Multi-Hazard Approaches to Civil Infrastructure Engineering. Springer International Publishing, p. 3-12 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

N-body simulations with ChaNGa

Quinn, T. R., Jetley, P., Kale, L. V. & Gioachin, F., Apr 19 2016, Parallel Science and Engineering Applications: The Charm++ Approach. CRC Press, p. 103-133 31 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

New guidance, navigation, and control technologies for formation flying spacecraft and planetary landing

Hadaegh, F. Y., Johnson, A. E., Bayard, D. S., Açıkmeşe, B., Chung, S. J. & Mehra, R. K., Sep 19 2016, Lecture Notes in Control and Information Sciences. Springer-Verlag, p. 49-80 32 p. (Lecture Notes in Control and Information Sciences; vol. 460).

Research output: Chapter in Book/Report/Conference proceedingChapter

On the motivic stable pairs invariants of K3 surfaces

Katz, S., Klemm, A., Pandharipande, R. & Thomas, R. P., Jan 1 2016, Progress in Mathematics. Springer Basel, p. 111-146 36 p. (Progress in Mathematics; vol. 315).

Research output: Chapter in Book/Report/Conference proceedingChapter

OpenAtom: Ab initio molecular dynamics for petascale platforms

Martyna, G. J., Bohm, E. J., Venkataraman, R., Kale, L. V. & Bhatele, A., Apr 19 2016, Parallel Science and Engineering Applications: The Charm++ Approach. CRC Press, p. 77-102 26 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Optics in nanotechnology

Nayfeh, M. H., Jan 1 2016, Optics in Our Time. Springer International Publishing, p. 223-264 42 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Patent Eligible Subject Matter After Alice

Kesan, J. P., 2016, Research handbook on electronic commerce law. Edward Elgar, p. 235-257 (Research handbooks in information law).

Research output: Chapter in Book/Report/Conference proceedingChapter

Probabilistic evaluation framework for fire and fire following earthquake

Khorasani, N. E., Garlock, M. & Gardoni, P., Jan 1 2016, Multi-Hazard Approaches to Civil Infrastructure Engineering. Springer International Publishing, p. 211-227 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Raman Scattering as a tool for studying complex materials

Cooper, S. L., Abbamonte, P., Mason, N., Snow, C. S., Kim, M., Barath, H., Karpus, J. F., Chialvo, C. E., Reed, J. P., Joe, Y. I., Chen, X., Casa, D. & Gan, Y., Apr 19 2016, Optical Techniques for Solid-State Materials Characterization. CRC Press, p. 193-234 42 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Recent advances in fluid-structure interaction simulations of wind turbines

Korobenko, A., Deng, X., Yan, J. & Bazilevs, Y., Jan 1 2016, Modeling and Simulation in Science, Engineering and Technology. Springer Basel, p. 489-500 12 p. (Modeling and Simulation in Science, Engineering and Technology).

Research output: Chapter in Book/Report/Conference proceedingChapter

Risk analysis of natural hazards: Interdisciplinary challenges and integrated solutions

Gardoni, P., Murphy, C. & Rowell, A., Jan 1 2016, Risk Analysis of Natural Hazards: Interdisciplinary Challenges and Integrated Solutions. Gardoni, P., Murphy, C. & Rowell, A. (eds.). Springer International Publishing, p. 1-7 7 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Risk-informed decision framework for built environment: The incorporation of epistemic uncertainty

Cha, E. J. & Wang, Y., Jan 1 2016, Risk Analysis of Natural Hazards: Interdisciplinary Challenges and Integrated Solutions. Springer International Publishing, p. 279-296 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Scalable molecular dynamics with NAMD

Phillips, J. C., Schulten, K., Bhatele, A., Mei, C., Sun, Y., Bohm, E. J. & Kale, L. V., Apr 19 2016, Parallel Science and Engineering Applications: The Charm++ Approach. CRC Press, p. 60-76 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Scaling to RVE in random media

Ostoja-Starzewski, M., Kale, S., Karimi, P., Malyarenko, A., Raghavan, B., Ranganathan, S. I. & Zhang, J., Jan 1 2016, Advances in Applied Mechanics. Academic Press Inc., p. 111-211 101 p. (Advances in Applied Mechanics; vol. 49).

Research output: Chapter in Book/Report/Conference proceedingChapter

Semiconductor quantum dots for molecular and cellular imaging

Smith, A. M. & Nie, S., Apr 19 2016, Tissue Engineering and Artificial Organs. CRC Press, p. 349-358 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter