Evolution, Ecology, and Behavior

Search results

• The 16S.B.ALL dataset in 100-HF condition

  Shen, C. (Creator), Park, M. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Mar 25 2022

  DOI: 10.13012/B2IDB-6604429_V1

  Dataset

• Using INC within Divide-and-Conquer Phylogeny Estimation - Datasets

  Le, T. (Creator), Sy, A. (Creator), Molloy, E. K. (Creator), Zhang, Q. (Creator), Rao, S. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jan 27 2019

  DOI: 10.13012/B2IDB-8518809_V1

  Dataset

• Data for SEPP: SATé-Enabled Phylogenetic Placement.

  Mirarab, S. (Creator), Ngyuen, N.-P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jul 1 2012

  DOI: 10.13012/B2IDB-9316702_V1

  Dataset

• Data from: Statistically consistent divide-and-conquer pipelines for phylogeny estimation using NJMerge

  Molloy, E. K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, May 16 2019

  DOI: 10.13012/B2IDB-0569467_V2

  Dataset

• Data for Ultra-Large Alignments Using Phylogeny-Aware Profiles

  Nguyen, N.-P. (Creator), Mirarab, S. (Creator), Kumar, K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Dec 16 2015

  DOI: 10.13012/B2IDB-3174395_V1

  Dataset

• Data for SuperFine, DACTAL, and BeeTLe

  Swenson, M. S. (Creator), Suri, R. (Creator), Linder, C. R. (Creator), Warnow, T. (Creator), Nguyen, N.-P. (Creator), Mirarab, S. (Creator), Neves, D. T. (Creator), Sobral, J. L. (Creator), Pingali, K. (Creator), Nelesen, S. (Creator), Liu, K. (Creator) & Wang, L.-S. (Creator), University of Illinois Urbana-Champaign, Sep 20 2011

  DOI: 10.13012/B2IDB-2952208_V1

  Dataset

• Fragmentary Sequences for Variable-Sized RNAsim Datasets

  Warnow, T. (Creator) & Wedell, E. (Creator), University of Illinois Urbana-Champaign, Jun 16 2021

  DOI: 10.13012/B2IDB-8788479_V1

  Dataset

• Data for Jones et al. ECY22-0118.R3

  Jones, T. (Creator), Di Giovanni, A. (Creator), Hauber, M. E. (Creator) & Ward, M. P. (Creator), University of Illinois Urbana-Champaign, Nov 7 2022

  DOI: 10.13012/B2IDB-7460768_V1

  Dataset

• Hoover et al AUK-19-093 Illinois Data Bank Local conspecific density does not influence reproductive output in a secondary cavity-nesting songbird

  Hoover, J. P. (Creator), Davros, N. M. (Creator), Schelsky, W. (Creator) & Brawn, J. D. (Creator), University of Illinois Urbana-Champaign, Jun 1 2020

  DOI: 10.13012/B2IDB-6382488_V1

  Dataset

• 5000-het: Dataset of Nucleotide Sequences with a Form of Evolutionary Sequence Length Heterogeneity

  Liu, B. (Creator), Shen, C. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Aug 5 2022

  DOI: 10.13012/B2IDB-3974819_V1

  Dataset

• Additional datasets (RNASim10k) for EMMA: A New Method for Computing Multiple Sequence Alignments given a Constraint Subset Alignment

  Shen, C. (Creator), Liu, B. (Creator), Williams, K. P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Sep 13 2023

  DOI: 10.13012/B2IDB-4194451_V1

  Dataset

• Data from: FastMulRFS: Statistically consistent polynomial time species tree estimation under gene duplication

  Molloy, E. K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Nov 11 2019

  DOI: 10.13012/B2IDB-5721322_V1

  Dataset

• Data from: Accurate Large-scale Phylogeny-Aware Alignment using BAli-Phy

  Gupta, M. (Creator), Zaharias, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Apr 30 2021

  DOI: 10.13012/B2IDB-7863273_V1

  Dataset

• Merrill et al. ECE-2021-05-00793.R1

  Merrill, L. (Creator), Jones, T. (Creator), Brawn, J. D. (Creator) & Ward, M. P. (Creator), University of Illinois Urbana-Champaign, Sep 29 2022

  DOI: 10.13012/B2IDB-8719858_V1

  Dataset

• Data from: The Performance of Coalescent-Based Species Tree Estimation Methods under Models of Missing Data

  Nute, M. (Creator), Jed, C. (Creator), Molloy, E. K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Sep 19 2017

  DOI: 10.13012/B2IDB-7735354_V1

  Dataset

• Data from: DISCO+QR: Rooting Species Trees in the Presence of GDL and ILS

  Willson, J. (Creator), Tabatabaee, Y. (Creator), Liu, B. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Feb 7 2023

  DOI: 10.13012/B2IDB-5748609_V1

  Dataset

• Data for Taxonomic Identification and Phylogenetic Profiling

  Nguyen, N.-P. (Creator), Mirarab, S. (Creator), Bo, L. (Creator), Pop, M. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Oct 29 2014

  DOI: 10.13012/B2IDB-8783447_V1

  Dataset

• TIPP3 Reference Package for Abundance Profiling

  Shen, C. (Creator), Wedell, E. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Apr 21 2025

  DOI: 10.13012/B2IDB-4931852_V2

  Dataset

• Biological and Simulated datasets for testing the SCAMPP framework for phylogenetic placement methods

  Wedell, E. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Apr 29 2022

  DOI: 10.13012/B2IDB-9257957_V1

  Dataset

• Data for Well-Connectedness and Community Detection

  Park, M. (Creator), Tabatabaee, Y. (Creator), Warnow, T. (Creator) & Chacko, G. (Creator), University of Illinois Urbana-Champaign, Jun 4 2024

  DOI: 10.13012/B2IDB-6271968_V1

  Dataset

• RNASim-VS2

  Chu, G. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jun 7 2022

  DOI: 10.13012/B2IDB-8812049_V1

  Dataset

• Data from TRACTION: Fast non-parametric improvement of estimated gene trees

  Christensen, S. (Creator), Molloy, E. K. (Creator), Vachaspati, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jul 29 2019

  DOI: 10.13012/B2IDB-1747658_V1

  Dataset