Evolution, Ecology, and Behavior

Search results

• Data for Ultra-Large Alignments Using Phylogeny-Aware Profiles

  Nguyen, N.-P. (Creator), Mirarab, S. (Creator), Kumar, K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Dec 16 2015

  DOI: 10.13012/B2IDB-3174395_V1

  Dataset

• MAGUS+eHMMs: Improved Multiple Sequence Alignment Accuracy for Fragmentary Sequences

  Shen, C. (Creator), Zaharias, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jun 28 2021

  DOI: 10.13012/B2IDB-2419626_V1

  Dataset

• RNASim-VS2

  Chu, G. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jun 7 2022

  DOI: 10.13012/B2IDB-8812049_V1

  Dataset

• Data from: The Performance of Coalescent-Based Species Tree Estimation Methods under Models of Missing Data

  Nute, M. (Creator), Jed, C. (Creator), Molloy, E. K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Sep 19 2017

  DOI: 10.13012/B2IDB-7735354_V1

  Dataset

• Using INC within Divide-and-Conquer Phylogeny Estimation - Datasets

  Le, T. (Creator), Sy, A. (Creator), Molloy, E. K. (Creator), Zhang, Q. (Creator), Rao, S. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jan 27 2019

  DOI: 10.13012/B2IDB-8518809_V1

  Dataset

• Data for Taxonomic Identification and Phylogenetic Profiling

  Nguyen, N.-P. (Creator), Mirarab, S. (Creator), Bo, L. (Creator), Pop, M. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Oct 29 2014

  DOI: 10.13012/B2IDB-8783447_V1

  Dataset

• Data from: Polynomial-Time Statistical Estimation of Species Trees under Gene Duplication and Loss

  Legried, B. (Creator), Molloy, E. K. (Creator), Warnow, T. (Creator) & Roch, S. (Creator), University of Illinois Urbana-Champaign, Jul 15 2020

  DOI: 10.13012/B2IDB-2626814_V3

  Dataset

• Data From: "Comparing Methods for Species Tree Estimation With Gene Duplication and Loss"

  Willson, J. (Creator), Roddur, M. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jan 23 2021

  DOI: 10.13012/B2IDB-2418574_V1

  Dataset

• Data from: "Inferring Species Trees from Gene-Family with Duplication and Loss using Multi-Copy Gene-Family Tree Decomposition"

  Willson, J. (Creator), Roddur, M. S. (Creator), Baqiao, L. (Creator), Zaharias, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, May 21 2021

  DOI: 10.13012/B2IDB-4050038_V1

  Dataset

• Disjoint Tree Mergers for Large-Scale Maximum LikelihoodTree Estimation

  Park, M. (Creator), Zaharias, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Apr 11 2021

  DOI: 10.13012/B2IDB-7008049_V1

  Dataset

• Data from Scalable Species Tree Inference with External Constraints

  Liu, B. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Nov 3 2021

  DOI: 10.13012/B2IDB-2566000_V1

  Dataset

• Data for SEPP: SATé-Enabled Phylogenetic Placement.

  Mirarab, S. (Creator), Ngyuen, N.-P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jul 1 2012

  DOI: 10.13012/B2IDB-9316702_V1

  Dataset

• Datasets for EMMA: A New Method for Computing Multiple Sequence Alignments given a Constraint Subset Alignment

  Shen, C. (Creator), Liu, B. (Creator), Williams, K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Aug 8 2022

  DOI: 10.13012/B2IDB-2567453_V1

  Dataset

• Data for Well-Connectedness and Community Detection

  Park, M. (Creator), Tabatabaee, Y. (Creator), Warnow, T. (Creator) & Chacko, G. (Creator), University of Illinois Urbana-Champaign, Jun 4 2024

  DOI: 10.13012/B2IDB-6271968_V1

  Dataset

• Additional datasets (RNASim10k) for EMMA: A New Method for Computing Multiple Sequence Alignments given a Constraint Subset Alignment

  Shen, C. (Creator), Liu, B. (Creator), Williams, K. P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Sep 13 2023

  DOI: 10.13012/B2IDB-4194451_V1

  Dataset

• PASTA For Proteins Data (BALiBASE)

  Collins, K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Apr 6 2018

  DOI: 10.13012/B2IDB-4074787_V1

  Dataset

• Data for Rapid and Accurate Large-Scale Coestimation of Sequence Alignments and Phylogenetic Trees

  Liu, K. (Creator), Raghavan, S. (Creator), Nelesen, S. (Creator), Linder, C. R. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jun 19 2009

  DOI: 10.13012/B2IDB-5139418_V1

  Dataset

• Data from: Accurate Large-scale Phylogeny-Aware Alignment using BAli-Phy

  Gupta, M. (Creator), Zaharias, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Apr 30 2021

  DOI: 10.13012/B2IDB-7863273_V1

  Dataset

• Merrill et al. ECE-2021-05-00793.R1

  Merrill, L. (Creator), Jones, T. (Creator), Brawn, J. D. (Creator) & Ward, M. P. (Creator), University of Illinois Urbana-Champaign, Sep 29 2022

  DOI: 10.13012/B2IDB-8719858_V1

  Dataset

• Data from: DISCO+QR: Rooting Species Trees in the Presence of GDL and ILS

  Willson, J. (Creator), Tabatabaee, Y. (Creator), Liu, B. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Feb 7 2023

  DOI: 10.13012/B2IDB-5748609_V1

  Dataset

• Synthetic Networks For Benchmarking

  Anne, L. (Creator), Park, M. (Creator), Warnow, T. (Creator) & Chacko, G. (Creator), University of Illinois Urbana-Champaign, Feb 8 2025

  DOI: 10.13012/B2IDB-9805305_V1

  Dataset

• The 16S.B.ALL dataset in 100-HF condition

  Shen, C. (Creator), Park, M. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Mar 25 2022

  DOI: 10.13012/B2IDB-6604429_V1

  Dataset