Evolution, Ecology, and Behavior

Search results

• Data from "Re-evaluating Deep Neural Networks for Phylogeny Estimation: The issue of taxon sampling"

  Zaharias, P. (Creator), Grosshauser, M. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Aug 24 2021

  DOI: 10.13012/B2IDB-8921156_V1

  Dataset

• Seven ROSE datasets in high and low fragmentation conditions

  Shen, C. (Creator), Park, M. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Nov 19 2021

  DOI: 10.13012/B2IDB-6128941_V1

  Dataset

• INDELible simulated datesets with sequence length heterogeneity

  Warnow, T. (Creator) & Park, M. (Creator), University of Illinois Urbana-Champaign, Apr 6 2023

  DOI: 10.13012/B2IDB-0900513_V1

  Dataset

• Data For Well-Connected Communities In Real Networks.

  Park, M. (Creator), Tabatabaee, Y. (Creator), Warnow, T. (Creator) & Chacko, G. (Creator), University of Illinois Urbana-Champaign, Mar 16 2023

  DOI: 10.13012/B2IDB-0908742_V1

  Dataset

• Data from: Polynomial-Time Statistical Estimation of Species Trees under Gene Duplication and Loss

  Legried, B. (Creator), Molloy, E. K. (Creator), Warnow, T. (Creator) & Roch, S. (Creator), University of Illinois Urbana-Champaign, Jan 22 2020

  DOI: 10.13012/B2IDB-2626814_V2

  Dataset

• Data for Rapid and Accurate Large-Scale Coestimation of Sequence Alignments and Phylogenetic Trees

  Liu, K. (Creator), Raghavan, S. (Creator), Nelesen, S. (Creator), Linder, C. R. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jun 19 2009

  DOI: 10.13012/B2IDB-5139418_V1

  Dataset

• NJMerge: A generic technique for scaling phylogeny estimation methods and its application to species trees

  Molloy, E. K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jul 29 2018

  DOI: 10.13012/B2IDB-1424746_V1

  Dataset

• MAGUS+eHMMs: Improved Multiple Sequence Alignment Accuracy for Fragmentary Sequences

  Shen, C. (Creator), Zaharias, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jun 28 2021

  DOI: 10.13012/B2IDB-2419626_V1

  Dataset

• Data from: TreeMerge: A new method for improving the scalability of species tree estimation methods

  Molloy, E. K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Mar 19 2019

  DOI: 10.13012/B2IDB-9570561_V1

  Dataset

• TIPP3 Benchmark Data and Simulated Reads

  Shen, C. (Creator), Wedell, E. (Creator), Pop, M. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jan 27 2025

  DOI: 10.13012/B2IDB-5467027_V1

  Dataset

• Data from: Evolutionary and phylogenetic insights from a nuclear genome sequence of the extinct, giant subfossil koala lemur Megaladapis edwardsi

  Marciniak, S. (Creator), Mughal, M. R. (Creator), Godfrey, L. R. (Creator), Bankoff, R. J. (Creator), Randrianatoandro, H. D. D. (Creator), Crowley, B. E. (Creator), Bergey, C. M. (Creator), Muldoon, K. M. (Creator), Randrianasy, J. (Creator), Raharivololona, B. M. (Creator), Schuster, S. C. (Creator), Malhi, R. S. (Creator), Yoder, A. D. (Creator), Louis, E. E. (Creator), Kistler, L. (Creator) & Perry, G. H. (Creator), Dryad, Jun 10 2021

  DOI: 10.5061/dryad.5qfttdz3c

  Dataset

• Data from: Polynomial-Time Statistical Estimation of Species Trees under Gene Duplication and Loss

  Legried, B. (Creator), Molloy, E. K. (Creator), Warnow, T. (Creator) & Roch, S. (Creator), University of Illinois Urbana-Champaign, Jul 15 2020

  DOI: 10.13012/B2IDB-2626814_V3

  Dataset

• Datasets from the study: Optimal completion of incomplete gene trees in polynomial time using OCTAL

  Christensen, S. (Creator), Molloy, E. K. (Creator), Vachaspati, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jun 15 2017

  DOI: 10.13012/B2IDB-8402610_V1

  Dataset

• HIPPI Dataset

  Nguyen, N.-P. (Creator), Nute, M. (Creator), Mirarab, S. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Aug 16 2016

  DOI: 10.13012/B2IDB-6795126_V1

  Dataset

• Data from: Phylogenomic species tree estimation in the presence of incomplete lineage sorting and horizontal gene transfer

  Davidson, R. (Creator), Vachaspati, P. (Creator), Mirarab, S. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Oct 22 2023

  DOI: 10.13012/B2IDB-6670066_V1

  Dataset

• Data From: "Comparing Methods for Species Tree Estimation With Gene Duplication and Loss"

  Willson, J. (Creator), Roddur, M. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jan 23 2021

  DOI: 10.13012/B2IDB-2418574_V1

  Dataset

• Data from: "Inferring Species Trees from Gene-Family with Duplication and Loss using Multi-Copy Gene-Family Tree Decomposition"

  Willson, J. (Creator), Roddur, M. S. (Creator), Baqiao, L. (Creator), Zaharias, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, May 21 2021

  DOI: 10.13012/B2IDB-4050038_V1

  Dataset

• Disjoint Tree Mergers for Large-Scale Maximum LikelihoodTree Estimation

  Park, M. (Creator), Zaharias, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Apr 11 2021

  DOI: 10.13012/B2IDB-7008049_V1

  Dataset

• Data from Scalable Species Tree Inference with External Constraints

  Liu, B. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Nov 3 2021

  DOI: 10.13012/B2IDB-2566000_V1

  Dataset

• Datasets for EMMA: A New Method for Computing Multiple Sequence Alignments given a Constraint Subset Alignment

  Shen, C. (Creator), Liu, B. (Creator), Williams, K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Aug 8 2022

  DOI: 10.13012/B2IDB-2567453_V1

  Dataset

• Data for Dynamic controls on field-scale soil nitrous oxide hot spots and hot moments across a microtopographic gradient

  Krichels, A. (Creator), University of Illinois Urbana-Champaign, May 31 2019

  DOI: 10.13012/B2IDB-9733959_V1

  Dataset

• Data for 16S and 23S rRNA alignments

  Mirarab, S. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Sep 16 2017

  DOI: 10.13012/B2IDB-1614388_V1

  Dataset

• Datasets from the study "OCTAL: Optimal Completion of Gene Trees in Polynomial Time"

  Christensen, S. (Creator), Molloy, E. K. (Creator), Vachaspati, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Feb 22 2018

  DOI: 10.13012/B2IDB-1616387_V1

  Dataset

• PASTA For Proteins Data (BALiBASE)

  Collins, K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Apr 6 2018

  DOI: 10.13012/B2IDB-4074787_V1

  Dataset

• Synthetic Networks For Benchmarking

  Anne, L. (Creator), Park, M. (Creator), Warnow, T. (Creator) & Chacko, G. (Creator), University of Illinois Urbana-Champaign, Feb 8 2025

  DOI: 10.13012/B2IDB-9805305_V1

  Dataset