Datasets
- 1 - 25 out of 47 results
Search results
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Data from "Re-evaluating Deep Neural Networks for Phylogeny Estimation: The issue of taxon sampling"
Zaharias, P. (Creator), Grosshauser, M. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Aug 24 2021
DOI: 10.13012/B2IDB-8921156_V1
Dataset
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Seven ROSE datasets in high and low fragmentation conditions
Shen, C. (Creator), Park, M. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Nov 19 2021
DOI: 10.13012/B2IDB-6128941_V1
Dataset
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INDELible simulated datesets with sequence length heterogeneity
Warnow, T. (Creator) & Park, M. (Creator), University of Illinois Urbana-Champaign, Apr 6 2023
DOI: 10.13012/B2IDB-0900513_V1
Dataset
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Data For Well-Connected Communities In Real Networks.
Park, M. (Creator), Tabatabaee, Y. (Creator), Warnow, T. (Creator) & Chacko, G. (Creator), University of Illinois Urbana-Champaign, Mar 16 2023
DOI: 10.13012/B2IDB-0908742_V1
Dataset
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Data from: Polynomial-Time Statistical Estimation of Species Trees under Gene Duplication and Loss
Legried, B. (Creator), Molloy, E. K. (Creator), Warnow, T. (Creator) & Roch, S. (Creator), University of Illinois Urbana-Champaign, Jan 22 2020
DOI: 10.13012/B2IDB-2626814_V2
Dataset
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Data for Rapid and Accurate Large-Scale Coestimation of Sequence Alignments and Phylogenetic Trees
Liu, K. (Creator), Raghavan, S. (Creator), Nelesen, S. (Creator), Linder, C. R. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jun 19 2009
DOI: 10.13012/B2IDB-5139418_V1
Dataset
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NJMerge: A generic technique for scaling phylogeny estimation methods and its application to species trees
Molloy, E. K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jul 29 2018
DOI: 10.13012/B2IDB-1424746_V1
Dataset
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MAGUS+eHMMs: Improved Multiple Sequence Alignment Accuracy for Fragmentary Sequences
Shen, C. (Creator), Zaharias, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jun 28 2021
DOI: 10.13012/B2IDB-2419626_V1
Dataset
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Data from: TreeMerge: A new method for improving the scalability of species tree estimation methods
Molloy, E. K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Mar 19 2019
DOI: 10.13012/B2IDB-9570561_V1
Dataset
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TIPP3 Benchmark Data and Simulated Reads
Shen, C. (Creator), Wedell, E. (Creator), Pop, M. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jan 27 2025
DOI: 10.13012/B2IDB-5467027_V1
Dataset
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Data from: Evolutionary and phylogenetic insights from a nuclear genome sequence of the extinct, giant subfossil koala lemur Megaladapis edwardsi
Marciniak, S. (Creator), Mughal, M. R. (Creator), Godfrey, L. R. (Creator), Bankoff, R. J. (Creator), Randrianatoandro, H. D. D. (Creator), Crowley, B. E. (Creator), Bergey, C. M. (Creator), Muldoon, K. M. (Creator), Randrianasy, J. (Creator), Raharivololona, B. M. (Creator), Schuster, S. C. (Creator), Malhi, R. S. (Creator), Yoder, A. D. (Creator), Louis, E. E. (Creator), Kistler, L. (Creator) & Perry, G. H. (Creator), Dryad, Jun 10 2021
Dataset
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Data from: Polynomial-Time Statistical Estimation of Species Trees under Gene Duplication and Loss
Legried, B. (Creator), Molloy, E. K. (Creator), Warnow, T. (Creator) & Roch, S. (Creator), University of Illinois Urbana-Champaign, Jul 15 2020
DOI: 10.13012/B2IDB-2626814_V3
Dataset
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Datasets from the study: Optimal completion of incomplete gene trees in polynomial time using OCTAL
Christensen, S. (Creator), Molloy, E. K. (Creator), Vachaspati, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jun 15 2017
DOI: 10.13012/B2IDB-8402610_V1
Dataset
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HIPPI Dataset
Nguyen, N.-P. (Creator), Nute, M. (Creator), Mirarab, S. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Aug 16 2016
DOI: 10.13012/B2IDB-6795126_V1
Dataset
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Data from: Phylogenomic species tree estimation in the presence of incomplete lineage sorting and horizontal gene transfer
Davidson, R. (Creator), Vachaspati, P. (Creator), Mirarab, S. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Oct 22 2023
DOI: 10.13012/B2IDB-6670066_V1
Dataset
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Data From: "Comparing Methods for Species Tree Estimation With Gene Duplication and Loss"
Willson, J. (Creator), Roddur, M. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Jan 23 2021
DOI: 10.13012/B2IDB-2418574_V1
Dataset
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Data from: "Inferring Species Trees from Gene-Family with Duplication and Loss using Multi-Copy Gene-Family Tree Decomposition"
Willson, J. (Creator), Roddur, M. S. (Creator), Baqiao, L. (Creator), Zaharias, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, May 21 2021
DOI: 10.13012/B2IDB-4050038_V1
Dataset
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Disjoint Tree Mergers for Large-Scale Maximum LikelihoodTree Estimation
Park, M. (Creator), Zaharias, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Apr 11 2021
DOI: 10.13012/B2IDB-7008049_V1
Dataset
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Data from Scalable Species Tree Inference with External Constraints
Liu, B. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Nov 3 2021
DOI: 10.13012/B2IDB-2566000_V1
Dataset
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Datasets for EMMA: A New Method for Computing Multiple Sequence Alignments given a Constraint Subset Alignment
Shen, C. (Creator), Liu, B. (Creator), Williams, K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Aug 8 2022
DOI: 10.13012/B2IDB-2567453_V1
Dataset
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Data for Dynamic controls on field-scale soil nitrous oxide hot spots and hot moments across a microtopographic gradient
Krichels, A. (Creator), University of Illinois Urbana-Champaign, May 31 2019
DOI: 10.13012/B2IDB-9733959_V1
Dataset
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Data for 16S and 23S rRNA alignments
Mirarab, S. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Sep 16 2017
DOI: 10.13012/B2IDB-1614388_V1
Dataset
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Datasets from the study "OCTAL: Optimal Completion of Gene Trees in Polynomial Time"
Christensen, S. (Creator), Molloy, E. K. (Creator), Vachaspati, P. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Feb 22 2018
DOI: 10.13012/B2IDB-1616387_V1
Dataset
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PASTA For Proteins Data (BALiBASE)
Collins, K. (Creator) & Warnow, T. (Creator), University of Illinois Urbana-Champaign, Apr 6 2018
DOI: 10.13012/B2IDB-4074787_V1
Dataset
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Synthetic Networks For Benchmarking
Anne, L. (Creator), Park, M. (Creator), Warnow, T. (Creator) & Chacko, G. (Creator), University of Illinois Urbana-Champaign, Feb 8 2025
DOI: 10.13012/B2IDB-9805305_V1
Dataset