Research Output 1975 2019

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Review article
2019

A quantitative understanding of the role of co-composted biochar in plant growth using meta-analysis

Wang, Y., Villamil, M. B., Davidson, P. C. & Akdeniz Onuki, N., Oct 1 2019, In : Science of the Total Environment. 685, p. 741-752 12 p.

Research output: Contribution to journalReview article

meta-analysis
Productivity
productivity
compost
Soils

Fire blight disease, a fast-approaching threat to apple and pear production in China

ZHAO, Y. Q., TIAN, Y. L., WANG, L. M., GENG, G. M., ZHAO, W. J., HU, B. S. & Zhao, Y., Apr 1 2019, In : Journal of Integrative Agriculture. 18, 4, p. 815-820 6 p.

Research output: Contribution to journalReview article

Open Access
Pyrus
Erwinia amylovora
Malus
pears
China

Germplasm Development of Underutilized Temperate U.S. Tree Crops

Revord, R., Lovell, S. T., Molnar, T., Wolz, K. J. & Mattia, C., Mar 14 2019, In : Sustainability. 11, 6, 20 p., 1546.

Research output: Contribution to journalReview article

Open Access
germplasm
Crops
crop
breeding
agroforestry

The influence of rising tropospheric carbon dioxide and ozone on plant productivity

Ainsworth, E., Lemonnier, P. & Wedow, J. M., Jan 1 2019, In : Plant Biology.

Research output: Contribution to journalReview article

Open Access
ozone
carbon dioxide
pollutants
productivity
terrestrial ecosystem

Water Use Efficiency as a Constraint and Target for Improving the Resilience and Productivity of C 3 and C 4 Crops

Leakey, A., Ferguson, J. N., Pignon, C. P., Wu, A., Jin, Z., Hammer, G. L. & Lobell, D. B., Apr 1 2019, In : Annual Review of Plant Biology. 70, p. 781-808 28 p.

Research output: Contribution to journalReview article

water use efficiency
Water
crops
Photosynthesis
photosynthesis
2018

Above- and Belowground Prairie Cordgrass Response to Applied Nitrogen on Marginal Land

Hernández, K. A., Owens, V. N., Boe, A., González-Hernández, J. L., Lee, D. & Aberle, E., Jun 1 2018, In : Bioenergy Research. 11, 2, p. 440-448 9 p.

Research output: Contribution to journalReview article

Spartina pectinata
Biomass
Nitrogen
nitrogen
biomass production

Archaea-First and the Co-Evolutionary Diversification of Domains of Life

Staley, J. T. & Caetano-Anolles, G., Aug 1 2018, In : BioEssays. 40, 8, 1800036.

Research output: Contribution to journalReview article

Archaea
Bacteria
Cells
Eukaryota
Methane

Consensus, uncertainties and challenges for perennial bioenergy crops and land use

Whitaker, J., Field, J. L., Bernacchi, C., Cerri, C. E. P., Ceulemans, R., Davies, C. A., Delucia, E. H., Donnison, I. S., McCalmont, J. P., Paustian, K., Rowe, R. L., Smith, P., Thornley, P. & McNamara, N. P., Mar 1 2018, In : GCB Bioenergy. 10, 3, p. 150-164 15 p.

Research output: Contribution to journalReview article

energy crops
bioenergy
Land use
Crops
Greenhouse gases

Integration of sudden death syndrome resistance loci in the soybean genome

Chang, H. X., Roth, M. G., Wang, D., Cianzio, S. R., Lightfoot, D. A., Hartman, G. L. & Chilvers, M. I., Apr 1 2018, In : Theoretical and Applied Genetics. 131, 4, p. 757-773 17 p.

Research output: Contribution to journalReview article

Sudden Death
Soybeans
Genome
soybeans
death

Optimizing photorespiration for improved crop productivity

South, P. F., Cavanagh, A. P., Lopez-Calcagno, P. E., Raines, C. A. & Ort, D. R., Dec 1 2018, In : Journal of Integrative Plant Biology. 60, 12, p. 1217-1230 14 p.

Research output: Contribution to journalReview article

photorespiration
Crops
ribulose 1,5-diphosphate
Productivity
Oxygenases

Optimizing RNA-seq studies to investigate herbicide resistance

Giacomini, D. A., Gaines, T., Beffa, R. & Tranel, P. J., Oct 1 2018, In : Pest Management Science. 74, 10, p. 2260-2264 5 p.

Research output: Contribution to journalReview article

herbicide resistance
sequence analysis
herbicides
weed science
biotypes

Origins and structure of chloroplastic and mitochondrial plant protoporphyrinogen oxidases: implications for the evolution of herbicide resistance

Dayan, F. E., Barker, A. & Tranel, P. J., Oct 1 2018, In : Pest Management Science. 74, 10, p. 2226-2234 9 p.

Research output: Contribution to journalReview article

protoporphyrinogen oxidase
herbicide resistance
mutation
arginine
Amaranthus tuberculatus

Phloem function: a key to understanding and manipulating plant responses to rising atmospheric [CO2]?

Ainsworth, E. & Lemonnier, P., Jun 1 2018, In : Current opinion in plant biology. 43, p. 50-56 7 p.

Research output: Contribution to journalReview article

phloem
plant response
carbon dioxide
phloem loading
sucrose

Priorities for wheat intensification in the Eastern Indo-Gangetic Plains

Park, A., Davis, A. & McDonald, A., Jun 1 2018, In : Global Food Security. 17, p. 1-8 8 p.

Research output: Contribution to journalReview article

Triticum
wheat
plain

Reviewing research priorities in weed ecology, evolution and management: a horizon scan

Neve, P., Barney, J. N., Buckley, Y., Cousens, R. D., Graham, S., Jordan, N. R., Lawton-Rauh, A., Liebman, M., Mesgaran, M. B., Schut, M., Shaw, J., Storkey, J., Baraibar, B., Baucom, R. S., Chalak, M., Childs, D. Z., Christensen, S., Eizenberg, H., Fernández-Quintanilla, C., French, K. & 15 othersHarsch, M., Heijting, S., Harrison, L., Loddo, D., Macel, M., Maczey, N., Merotto, A., Mortensen, D., Necajeva, J., Peltzer, D. A., Recasens, J., Renton, M., Riemens, M., Sønderskov, M. & Williams, M. M., Aug 1 2018, In : Weed Research. 58, 4, p. 250-258 9 p.

Research output: Contribution to journalReview article

weed
weeds
ecology
weed control
exercise

Revisiting paradigms of Ca2+ signaling protein kinase regulation in plants

Bender, K. W., Zielinski, R. E. & Huber, S. C., Jan 15 2018, In : Biochemical Journal. 475, 1, p. 207-223 17 p.

Research output: Contribution to journalReview article

Protein Kinases
Chemical activation
Calcineurin
Phosphotransferases
Sensors

Rooting Phylogenies and the Tree of Life While Minimizing Ad Hoc and Auxiliary Assumptions

Caetano-Anolles, G., Nasir, A., Kim, K. M. & Caetano-Anollés, D., Oct 1 2018, In : Evolutionary Bioinformatics. 14

Research output: Contribution to journalReview article

Phylogeny
rooting
phylogeny
Biological Evolution
Data storage equipment

Strengths and limitations of Nitrogen rate recommendations for corn and opportunities for improvement

Morris, T. F., Murrell, T. S., Beegle, D. B., Camberato, J. J., Ferguson, R. B., Grove, J., Ketterings, Q., Kyveryga, P. M., Laboski, C. A. M., McGrath, J. M., Meisinger, J. J., Melkonian, J., Moebius-Clune, B. N., Nafziger, E. D., Osmond, D., Sawyer, J. E., Scharf, P. C., Smith, W., Spargo, J. T., Van Es, H. M. & 1 othersYang, H., Jan 1 2018, In : Agronomy Journal. 110, 1, p. 1-37 37 p.

Research output: Contribution to journalReview article

nitrogen fertilizers
corn
nitrogen
ecological footprint
fertilizer rates

Temperate agroforestry research: considering multifunctional woody polycultures and the design of long-term field trials

Lovell, S. T., Dupraz, C., Gold, M., Jose, S., Revord, R., Stanek, E. & Wolz, K. J., Oct 1 2018, In : Agroforestry Systems. 92, 5, p. 1397-1415 19 p.

Research output: Contribution to journalReview article

polyculture
agroforestry
field experimentation
woody plant
woody plants
2017

CHO cell cytotoxicity and genotoxicity analyses of disinfection by-products: An updated review

Wagner, E. D. & Plewa, M. J., Aug 1 2017, In : Journal of environmental sciences (China). 58, p. 64-76 13 p.

Research output: Contribution to journalReview article

Disinfection
genotoxicity
Cytotoxicity
disinfection
Byproducts

Comparison of organic and integrated nutrient management strategies for reducing soil N2O emissions

Graham, R. F., Wortman, S. E. & Pittelkow, C. M., Mar 28 2017, In : Sustainability (Switzerland). 9, 4, 510.

Research output: Contribution to journalReview article

soil emission
Nutrients
Soils
nutrient
management

First-season crop yield response to organic soil amendments: A meta-analysis

Wortman, S. E., Holmes, A. A., Miernicki, E., Knoche, K. & Pittelkow, C. M., Jan 1 2017, In : Agronomy Journal. 109, 4, p. 1210-1217 8 p.

Research output: Contribution to journalReview article

soil amendments
meta-analysis
organic soils
crop yield
arid zones

Long-term evolution of viruses: A Janus-faced balance

Nasir, A., Kim, K. M. & Caetano-Anolles, G., Aug 1 2017, In : BioEssays. 39, 8, 1700026.

Research output: Contribution to journalReview article

Long Term Evolution (LTE)
Viruses
Virus Latency
Symbiosis
Metagenomics

Mimivirus: Leading the way in the discovery of giant viruses of amoebae

Colson, P., La Scola, B., Levasseur, A., Caetano-Anolles, G. & Raoult, D., Mar 13 2017, In : Nature Reviews Microbiology. 15, 4, p. 243-254 12 p.

Research output: Contribution to journalReview article

Mimiviridae
Amoeba
Viruses
Virus Internalization
Virology

Phenotypic plasticity and remodeling in the stress-induced Caenorhabditis elegans dauer

Androwski, R. J., Flatt, K. M. & Schroeder, N. E., Sep 1 2017, In : Wiley Interdisciplinary Reviews: Developmental Biology. 6, 5, e278.

Research output: Contribution to journalReview article

Caenorhabditis elegans
Osmoregulation
Aptitude
Neuroglia
Neurons

Potential of global croplands and bioenergy crops for climate change mitigation through deployment for enhanced weathering

Kantola, I. B., Masters, M. D., Beerling, D. J., Long, S. P. & Delucia, E. H., Apr 1 2017, In : Biology Letters. 13, 4, 0714.

Research output: Contribution to journalReview article

Climate Change
energy crops
weathering
Soil
carbon dioxide

Proso millet (Panicum miliaceum L.) and its potential for cultivation in the Pacific Northwest, U.S. A review

Habiyaremye, C., Matanguihan, J. B., D’Alpoim Guedes, J., Ganjyal, G. M., Whiteman, M. R., Kidwell, K. K. & Murphy, K. M., Jan 9 2017, In : Frontiers in Plant Science. 7, 1961.

Research output: Contribution to journalReview article

Panicum miliaceum subsp. miliaceum
Panicum miliaceum
dryland farming
warm season grasses
alternative crops

Robust spatial frameworks for leveraging research on sustainable crop intensification

Grassini, P., Pittelkow, C. M., Cassman, K. G., Yang, H. S., Archontoulis, S., Licht, M., Lamkey, K. R., Ciampitti, I. A., Coulter, J. A., Brouder, S. M., Volenec, J. J. & Guindin-Garcia, N., Sep 1 2017, In : Global Food Security. 14, p. 18-22 5 p.

Research output: Contribution to journalReview article

Crops
agricultural statistics
farming system
crop
development policy

Rooting for cassava: insights into photosynthesis and associated physiology as a route to improve yield potential

De Souza, A. P., Massenburg, L. N., Jaiswal, D., Cheng, S., Shekar, R. & Long, S. P., Jan 1 2017, In : New Phytologist. 213, 1, p. 50-65 16 p.

Research output: Contribution to journalReview article

Manihot
Photosynthesis
cassava
rooting
physiology

Switchgrass as a bioenergy crop in the Loess Plateau, China: Potential lignocellulosic feedstock production and environmental conservation

Cooney, D., Kim, H., Quinn, L., Lee, M. S., Guo, J., CHEN, S. L., XU, B. C. & Lee, D., Jun 1 2017, In : Journal of Integrative Agriculture. 16, 6, p. 1211-1226 16 p.

Research output: Contribution to journalReview article

Panicum
Panicum virgatum
energy crops
bioenergy
loess
2016

2,4-D Past, Present, and Future: A Review

Peterson, M. A., McMaster, S. A., Riechers, D. E., Skelton, J. & Stahlman, P. W., Apr 1 2016, In : Weed Technology. 30, 2, p. 303-345 43 p.

Research output: Contribution to journalReview article

2,4-D
herbicidal properties
ecotoxicology
commercialization
biotechnology

Arguments Reinforcing the Three-Domain View of Diversified Cellular Life

Nasir, A., Kim, K. M., Da Cunha, V. & Caetano-Anolles, G., Jan 1 2016, In : Archaea. 2016, 1851865.

Research output: Contribution to journalReview article

Eukaryota
ancestry
Phylogeny
eukaryote
domain structure

Effects from early planting of late-maturing sunflowers on damage from primary insect pests in the United States

Prasifka, J. R., Marek, L. F., Lee, D., Thapa, S. B., Hahn, V. & Bradshaw, J. D., Jul 1 2016, In : Helia. 39, 64, p. 45-56 12 p.

Research output: Contribution to journalReview article

Smicronyx fulvus
Cochylis hospes
Homoeosoma electellum
insect pests
Helianthus annuus

Has photosynthetic capacity increased with 80years of soybean breeding? An examination of historical soybean cultivars

Koester, R. P., Nohl, B. M., Diers, B. W. & Ainsworth, E., May 1 2016, In : Plant Cell and Environment. 39, 5, p. 1058-1067 10 p.

Research output: Contribution to journalReview article

Soybeans
Breeding
Biomass
soybeans
breeding

Manipulating photorespiration to increase plant productivity: Recent advances and perspectives for crop improvement

Betti, M., Bauwe, H., Busch, F. A., Fernie, A. R., Keech, O., Levey, M., Ort, D. R., Parry, M. A. J., Sage, R., Timm, S., Walker, B. & Weber, A. P. M., May 1 2016, In : Journal of experimental botany. 67, 10, p. 2977-2988 12 p.

Research output: Contribution to journalReview article

photorespiration
engineering
Ribulose-Bisphosphate Carboxylase
Oxygenases
Genetic Engineering

Meta-analysis approach to assess effect of tillage on microbial biomass and enzyme activities

Zuber, S. M. & Villamil, M. B., Jun 1 2016, In : Soil Biology and Biochemistry. 97, p. 176-187 12 p.

Research output: Contribution to journalReview article

meta-analysis
Biomass
tillage
microbial biomass
no-tillage

Perspectives on the transition from bacterial phytopathogen genomics studies to applications enhancing disease management: From promise to practice

Sundin, G. W., Wang, N., Charkowski, A. O., Castiblanco, L. F., Jia, H. & Zhao, Y., Oct 1 2016, In : Phytopathology. 106, 10, p. 1071-1082 12 p.

Research output: Contribution to journalReview article

plant pathogens
disease control
genomics
pathogens
bacterial diseases of plants

Plants in silico: Why, why now and what?-an integrative platform for plant systems biology research

Zhu, X. G., Lynch, J. P., LeBauer, D. S., Millar, A. J., Stitt, M. & Long, S. P., May 1 2016, In : Plant Cell and Environment. 39, 5, p. 1049-1057 9 p.

Research output: Contribution to journalReview article

Systems Biology
Computer Simulation
Biological Sciences
Research
Ecosystem

Sustainability of rice intensification in Uruguay from 1993 to 2013

Pittelkow, C. M., Zorrilla, G., Terra, J., Riccetto, S., Macedo, I., Bonilla, C. & Roel, A., Jun 1 2016, In : Global Food Security. 9, p. 10-18 9 p.

Research output: Contribution to journalReview article

Uruguay
Sustainable development
rice
sustainability
Carbon Footprint

The Costs of Photorespiration to Food Production Now and in the Future

Walker, B. J., Vanloocke, A., Bernacchi, C. & Ort, D. R., Apr 29 2016, In : Annual Review of Plant Biology. 67, p. 107-129 23 p.

Research output: Contribution to journalReview article

photorespiration
food production
Carbon Dioxide
Costs and Cost Analysis
Food

Transdisciplinary weed research: new leverage on challenging weed problems?

Jordan, N., Schut, M., Graham, S., Barney, J. N., Childs, D. Z., Christensen, S., Cousens, R. D., Davis, A., Eizenberg, H., Ervin, D. E., Fernandez-Quintanilla, C., Harrison, L. J., Harsch, M. A., Heijting, S., Liebman, M., Loddo, D., Mirsky, S. B., Riemens, M., Neve, P., Peltzer, D. A. & 4 othersRenton, M., Williams, M. M., Recasens, J. & Sønderskov, M., Jan 1 2016, In : Weed Research. 56, 5, p. 345-358 14 p.

Research output: Contribution to journalReview article

weed
weeds
stakeholders
stakeholder
sustainability
2015

Biophysical impacts of climate-smart agriculture in the Midwest United States

Bagley, J. E., Miller, J. & Bernacchi, C., Sep 1 2015, In : Plant, Cell and Environment. 38, 9, p. 1913-1930 18 p.

Research output: Contribution to journalReview article

Midwestern United States
Agriculture
Climate
agriculture
climate

Black Locust as a Bioenergy Feedstock: a Review

Straker, K. C., Quinn, L. D., Voigt, T. B., Lee, D. & Kling, G. J., Sep 8 2015, In : Bioenergy Research. 8, 3, p. 1117-1135 19 p.

Research output: Contribution to journalReview article

Robinia pseudoacacia
bioenergy
feedstocks
Feedstocks
Biomass
Synthetic Biology
Ribosomes
Censuses
Proteins
Macromolecules

Contrasting allelic distribution of CO/Hd1 homologues in Miscanthus sinensis from the East Asian mainland and the Japanese archipelago

Nagano, H., Clark, L. V., Zhao, H., Peng, J., Yoo, J. H., Heo, K., Yu, C. Y., Anzoua, K. G., Matsuo, T., Sacks, E. J. & Yamada, T., Jan 1 2015, In : Journal of experimental botany. 66, 14, p. 4227-4237 11 p.

Research output: Contribution to journalReview article

Miscanthus sinensis
heading
Alleles
alleles
loci

Distribution of herbicide resistances and molecular mechanisms conferring resistance in Missouri waterhemp (Amaranthus rudis Sauer) populations

Schultz, J. L., Chatham, L. A., Riggins, C. W., Tranel, P. J. & Bradley, K. W., Jan 1 2015, In : Weed Science. 63, 1, p. 336-345 10 p.

Research output: Contribution to journalReview article

Amaranthus tuberculatus
herbicide resistance
resistance mechanisms
glyphosate
chlorimuron

From association to prediction: Statistical methods for the dissection and selection of complex traits in plants

Lipka, A. E., Kandianis, C. B., Hudson, M., Yu, J., Drnevich, J., Bradbury, P. J. & Gore, M. A., Apr 1 2015, In : Current opinion in plant biology. 24, p. 110-118 9 p.

Research output: Contribution to journalReview article

statistical analysis
prediction
phenotype
marker-assisted selection
genotyping

Genetic structure of Miscanthus sinensis and Miscanthus sacchariflorus in Japan indicates a gradient of bidirectional but asymmetric introgression

Clark, L. V., Ryan Stewart, J., Nishiwaki, A., Toma, Y., Kjeldsen, J. B., Jørgensen, U., Zhao, H., Peng, J., Yoo, J. H., Heo, K., Yu, C. Y., Yamada, T. & Sacks, E. J., Jan 1 2015, In : Journal of experimental botany. 66, 14, p. 4213-4225 13 p.

Research output: Contribution to journalReview article

Miscanthus sacchariflorus
Miscanthus sinensis
Tetraploidy
Genetic Structures
introgression

Meeting the global food demand of the future by engineering crop photosynthesis and yield potential

Long, S. P., Marshall-Colon, A. & Zhu, X. G., Mar 26 2015, In : Cell. 161, 1, p. 56-66 11 p., 8102.

Research output: Contribution to journalReview article

Genetic Engineering
Photosynthesis
Computer Simulation
Crops
Food

Photosynthetic terpene hydrocarbon production for fuels and chemicals

Wang, X., Ort, D. R. & Yuan, J. S., Feb 1 2015, In : Plant Biotechnology Journal. 13, 2, p. 137-146 10 p.

Research output: Contribution to journalReview article

fuel production
Terpenes
Hydrocarbons
terpenoids
hydrocarbons