Research Output 1975 2020

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2017

Patterns of genomic and phenomic diversity in wine and table grapes

Migicovsky, Z., Sawler, J., Gardner, K. M., Aradhya, M. K., Prins, B. H., Schwaninger, H. R., Bustamante, C. D., Buckler, E. S., Zhong, G. Y., Brown, P. J. & Myles, S., Aug 2 2017, In : Horticulture Research. 4, 17035.

Research output: Contribution to journalArticle

wine grapes
table grapes
Wine
Vitis
grapes
Bioreactors
bioreactors
coastal plains
Climate
coastal plain

Photosynthesis: ancient, essential, complex, diverse … and in need of improvement in a changing world

Niinemets, Ü., Berry, J. A., von Caemmerer, S., Ort, D. R., Parry, M. A. J. & Poorter, H., Jan 1 2017, In : New Phytologist. 213, 1, p. 43-47 5 p.

Research output: Contribution to journalArticle

Photosynthesis, light use efficiency, and yield of reduced-chlorophyll soybean mutants in field conditions

Slattery, R. A., Vanloocke, A., Bernacchi, C. J., Zhu, X. G. & Ort, D. R., Apr 18 2017, In : Frontiers in Plant Science. 8, 549.

Research output: Contribution to journalArticle

photosynthesis
soybeans
chlorophyll
mutants
growing season
Proteome
Viruses
Vocabulary
Genome Size
Protein Domains

Phylotype and sequevar variability of Ralstonia solanacearum in Brazil, an ancient centre of diversity of the pathogen

Santiago, T. R., Lopes, C. A., Caetano-Anolles, G. & Mizubuti, E. S. G., Apr 1 2017, In : Plant Pathology. 66, 3, p. 383-392 10 p.

Research output: Contribution to journalArticle

Ralstonia solanacearum
center of diversity
Piper
Ecotype
Brazil

Physical mapping of amplified copies of the 5-Enolpyruvylshikimate-3-Phosphate synthase gene in Glyphosate-Resistant Amaranthus Tuberculatus

Dillon, A., Varanasi, V. K., Danilova, T. V., Koo, D. H., Nakka, S., Peterson, D. E., Tranel, P. J., Friebe, B., Gill, B. S. & Jugulam, M., Feb 2017, In : Plant physiology. 173, 2, p. 1226-1234 9 p.

Research output: Contribution to journalArticle

glyphosate
3-Phosphoshikimate 1-Carboxyvinyltransferase
Amaranthus tuberculatus
Amaranthus
physical chromosome mapping

Physiological and transcriptomic responses in the seed coat of field-grown soybean (Glycine max L. Merr.) to abiotic stress

Leisner, C. P., Yendrek, C. R. & Ainsworth, E., Dec 12 2017, In : BMC Plant Biology. 17, 1, 242.

Research output: Contribution to journalArticle

transcriptomics
abiotic stress
Glycine max
soybeans
drought

Plastic biofilm carrier after corn cobs reduces nitrate loading in laboratory denitrifying bioreactors

Feyereisen, G. W., Christianson, L. E., Moorman, T. B., Venterea, R. T. & Coulter, J. A., Jul 1 2017, In : Journal of Environmental Quality. 46, 4, p. 915-920 6 p.

Research output: Contribution to journalArticle

Biofilms
Bioreactors
bioreactor
biofilm
Nitrates

Prediction of short-distance aerial movement of Phakopsora pachyrhizi urediniospores using machine learning

Wen, L., Bowen, C. R. & Hartman, G. L., Oct 2017, In : Phytopathology. 107, 10, p. 1187-1198 12 p.

Research output: Contribution to journalArticle

Phakopsora pachyrhizi
artificial intelligence
traps
prediction
soybean rust

Prepartal Energy Intake Alters Blood Polymorphonuclear Leukocyte Transcriptome During the Peripartal Period in Holstein Cows

Agrawal, A., Khan, M. J., Graugnard, D. E., Vailati-Riboni, M., Rodriguez-Zas, S. L., Osorio, J. S. & Loor, J. J., Apr 27 2017, In : Bioinformatics and Biology Insights. 11

Research output: Contribution to journalArticle

Leukocytes
Nutrition
Energy Intake
Transcriptome
Blood
Brassica oleracea var. italica
Glucosinolates
health promotion
Brassica
Phytochemicals
Pseudomonas oleovorans
Cucumber green mottle mosaic virus
Pepper mild mottle virus
seeds
Tobamovirus

Pyramiding of alleles from multiple sources increases the resistance of soybean to highly virulent soybean cyst nematode isolates

Brzostowski, L. F. & Diers, B. W., Nov 1 2017, In : Crop Science. 57, 6, p. 2932-2941 10 p.

Research output: Contribution to journalArticle

Heterodera glycines
soybeans
alleles
quantitative trait loci
Nematoda

Recycling Carbon Dioxide during Xylose Fermentation by Engineered Saccharomyces cerevisiae

Xia, P. F., Zhang, G. C., Walker, B., Seo, S. O., Kwak, S., Liu, J. J., Kim, H., Ort, D. R., Wang, S. G. & Jin, Y-S., Feb 17 2017, In : ACS synthetic biology. 6, 2, p. 276-283 8 p.

Research output: Contribution to journalArticle

Xylose
Recycling
Pentoses
Carbon Dioxide
Pentose Phosphate Pathway

Reducing Nitrate-N losses to achieve water quality goals

Helmers, M., Christianson, L. E. & Christianson, R. D., Jul 1 2017, Resource: Engineering and Technology for Sustainable World, 24, 4, p. 22-24 3 p.

Research output: Contribution to specialist publicationArticle

Gulf of Mexico
Mississippi
Mississippi River
Water Quality
Watersheds

Registration of ‘Reins’ oat

Kolb, F. L., Smith, N. J., Krill, A. M. & Handal, E. A., Jan 2017, In : Journal of Plant Registrations. 11, 1, p. 20-25 6 p.

Research output: Contribution to journalArticle

Luteovirus
smut diseases
Barley yellow dwarf virus
lodging resistance
oats

Scientifically advanced woody media for improved water quality from livestock woodchip heavy-use areas

Christianson, L. E., DeVallance, D., Faulkner, J. & Basden, T., Jun 1 2017, In : Frontiers of Environmental Science and Engineering. 11, 3, 2.

Research output: Contribution to journalArticle

livestock
water quality
pasture
nitrate
gravel

Season-long ammonia flux measurements above fertilized corn in central Illinois, USA, using relaxed eddy accumulation

Nelson, A. J., Koloutsou-Vakakis, S., Rood, M. J., Myles, L. T., Lehmann, C. MB., Bernacchi, C., Balasubramanian, S., Joo, E., Heuer, M., Vieira-Filho, M. & Lin, J., May 28 2017, In : Agricultural and Forest Meteorology. 239, p. 202-212 11 p.

Research output: Contribution to journalArticle

flux measurement
eddy
ammonia
maize
agricultural ecosystem

Selection during maize domestication targeted a gene network controlling plant and inflorescence architecture

Studer, A. J., Wang, H. & Doebley, J. F., Oct 2017, In : Genetics. 207, 2, p. 755-765 11 p.

Research output: Contribution to journalArticle

Inflorescence
Gene Regulatory Networks
Zea mays
Genes
Domestication

Selinene volatiles are essential precursors for maize defense promoting fungal pathogen resistance

Ding, Y., Huffaker, A., Köllner, T. G., Weckwerth, P., Robert, C. A. M., Spencer, J. L., Lipka, A. E. & Schmelz, E. A., Nov 2017, In : Plant physiology. 175, 3, p. 1455-1468 14 p.

Research output: Contribution to journalArticle

Zea mays
Acids
corn
pathogens
acids

Semi-automated, machine vision based maize kernel counting on the ear

Grift, T. E., Zhao, W., Momin, M. A., Zhang, Y. & Bohn, M. O., Dec 2017, In : Biosystems Engineering. 164, p. 171-180 10 p.

Research output: Contribution to journalArticle

computer vision
Computer vision
Zea mays
Ear
ears

Sensitivity of Phakopsora pachyrhizi isolates to fungicides and reduction of fungal infection based on fungicide and timing of application

Twizeyimana, M. & Hartman, G. L., Jan 2017, In : Plant disease. 101, 1, p. 121-128 8 p.

Research output: Contribution to journalArticle

Phakopsora pachyrhizi
pesticide application
fungicides
infection
soybean rust

Serotonin regulates the feeding and reproductive behaviors of Pratylenchus penetrans

Han, Z., Boas, S. & Schroeder, N. E., Jul 2017, In : Phytopathology. 107, 7, p. 872-877 6 p.

Research output: Contribution to journalArticle

Pratylenchus penetrans
reproductive behavior
serotonin
feeding behavior
root lesion nematodes

Shifts in microbial communities in soil, rhizosphere and roots of two major crop systems under elevated CO2 and O3

Wang, P., Marsh, E. L., Ainsworth, E. A., Leakey, A. D. B., Sheflin, A. M. & Schachtman, D. P., Dec 1 2017, In : Scientific reports. 7, 1, 15019.

Research output: Contribution to journalArticle

microbial communities
rhizosphere
corn
root exudates
crops

Simulated heat waves during maize reproductive stages alter reproductive growth but have no lasting effect when applied during vegetative stages

Siebers, M. H., Slattery, R. A., Yendrek, C. R., Locke, A. M., Drag, D., Ainsworth, E., Bernacchi, C. & Ort, D. R., Mar 1 2017, In : Agriculture, Ecosystems and Environment. 240, p. 162-170 9 p.

Research output: Contribution to journalArticle

vegetative growth
maize
heat
corn
biomass
Photosynthesis
Solar System
Sun
Triticum
shade

Suppression of soilborne diseases of soybean with cover crops

Wen, L., Lee-Marzano, S., Ortiz-Ribbing, L. M., Gruver, J., Hartman, G. L. & Eastburn, D. M., Nov 2017, In : Plant disease. 101, 11, p. 1918-1928 11 p.

Research output: Contribution to journalArticle

soil-borne diseases
cover crops
rye
soybeans
Brassica juncea

Survey of Anthocyanin Composition and Concentration in Diverse Maize Germplasms

Paulsmeyer, M., Chatham, L., Becker, T., West, M., West, L. & Juvik, J. A., May 31 2017, In : Journal of Agricultural and Food Chemistry. 65, 21, p. 4341-4350 10 p.

Research output: Contribution to journalArticle

Anthocyanins
Zea mays
anthocyanins
germplasm
corn

Target-Site Resistances to ALS and PPO Inhibitors Are Linked in Waterhemp (Amaranthus tuberculatus)

Tranel, P. J., Wu, C. & Sadeque, A., Jan 2017, In : Weed Science. 65, 1, p. 4-8 5 p.

Research output: Contribution to journalArticle

Amaranthus tuberculatus
protoporphyrinogen oxidase
acetolactate synthase
linkage (genetics)
amaranth grain

Tassel deformation in corn following early-season defoliation

Thomison, P. R., Lindsey, A. J., Geyer, A. B., Nafziger, E. D., Coulter, J. A. & Zarnstorff, M. E., 2017, In : Crop, Forage and Turfgrass Management. 3, 1, p. 1-3 3 p.

Research output: Contribution to journalArticle

Temporal and spatial transcriptomic and microRNA dynamics of CAM photosynthesis in pineapple

Wai, C. M., VanBuren, R., Zhang, J., Huang, L., Miao, W., Edger, P. P., Yim, W. C., Priest, H. D., Meyers, B. C., Mockler, T., Smith, J. A. C., Cushman, J. C. & Ming, R. R., Oct 2017, In : Plant Journal. 92, 1, p. 19-30 12 p.

Research output: Contribution to journalArticle

Ananas
Crassulacean acid metabolism
Photosynthesis
pineapples
MicroRNAs

The crystal structure of Erwinia amylovora AmyR, a member of the YbjN protein family, shows similarity to type III secretion chaperones but suggests different cellular functions

Bartho, J. D., Bellini, D., Wuerges, J., Demitri, N., Toccafondi, M., Schmitt, A. O., Zhao, Y., Walsh, M. A. & Benini, S., Apr 2017, In : PloS one. 12, 4, e0176049.

Research output: Contribution to journalArticle

Erwinia amylovora
crystal structure
Crystal structure
secretion
Proteins

The effect of artificial selection on phenotypic plasticity in maize

Gage, J. L., Jarquin, D., Romay, C., Lorenz, A., Buckler, E. S., Kaeppler, S., Alkhalifah, N., Bohn, M., Campbell, D. A., Edwards, J., Ertl, D., Flint-Garcia, S., Gardiner, J., Good, B., Hirsch, C. N., Holland, J., Hooker, D. C., Knoll, J., Kolkman, J., Kruger, G. & 20 others, Lauter, N., Lawrence-Dill, C. J., Lee, E., Lynch, J., Murray, S. C., Nelson, R., Petzoldt, J., Rocheford, T., Schnable, J., Schnable, P. S., Scully, B., Smith, M., Springer, N. M., Srinivasan, S., Walton, R., Weldekidan, T., Wisser, R. J., Xu, W., Yu, J. & De Leon, N., Dec 1 2017, In : Nature communications. 8, 1, 1348.

Research output: Contribution to journalArticle

plastic properties
Zea mays
Plasticity
Crops
Genotype

The impact of iodinated X-ray contrast agents on formation and toxicity of disinfection by-products in drinking water

Jeong, C. H., Machek, E. J., Shakeri, M., Duirk, S. E., Ternes, T. A., Richardson, S. D., Wagner, E. D. & Plewa, M. J., Aug 2017, In : Journal of Environmental Sciences. 58, p. 173-182 10 p.

Research output: Contribution to journalArticle

Disinfection
Iopamidol
Potable water
Drinking Water
disinfection
Photosynthesis
Chlorophyll
antennae
photosynthesis
canopy

The impact of water management practices on subtropical pasture methane emissions and ecosystem service payments

Chamberlain, S. D., Groffman, P. M., Boughton, E. H., Gomez-Casanovas, N., DeLucia, E. H., Bernacchi, C. J. & Sparks, J. P., Jun 2017, In : Ecological Applications. 27, 4, p. 1199-1209 11 p.

Research output: Contribution to journalArticle

ecosystem service
water management
management practice
pasture
methane

The Kalanchoë genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism

Yang, X., Hu, R., Yin, H., Jenkins, J., Shu, S., Tang, H., Liu, D., Weighill, D. A., Cheol Yim, W., Ha, J., Heyduk, K., Goodstein, D. M., Guo, H. B., Moseley, R. C., Fitzek, E., Jawdy, S., Zhang, Z., Xie, M., Hartwell, J., Grimwood, J. & 29 others, Abraham, P. E., Mewalal, R., Beltrán, J. D., Boxall, S. F., Dever, L. V., Palla, K. J., Albion, R., Garcia, T., Mayer, J. A., Don Lim, S., Man Wai, C., Peluso, P., Van Buren, R., De Paoli, H. C., Borland, A. M., Guo, H., Chen, J. G., Muchero, W., Yin, Y., Jacobson, D. A., Tschaplinski, T. J., Hettich, R. L., Ming, R., Winter, K., Leebens-Mack, J. H., Smith, J. A. C., Cushman, J. C., Schmutz, J. & Tuskan, G. A., Dec 1 2017, In : Nature communications. 8, 1, 1899.

Research output: Contribution to journalArticle

genome
metabolism
Metabolism
Genes
Genome

The natural history of molecular functions inferred from an extensive phylogenomic analysis of gene ontology data

Koc, I. & Caetano-Anolles, G., May 2017, In : PloS one. 12, 5, e0176129.

Research output: Contribution to journalArticle

Gene Ontology
Phylogeny
Natural History
natural history
Ontology

The pomegranate (Punica granatum L.) genome and the genomics of punicalagin biosynthesis

Qin, G., Xu, C., Ming, R. R., Tang, H., Guyot, R., Kramer, E. M., Hu, Y., Yi, X., Qi, Y., Xu, X., Gao, Z., Pan, H., Jian, J., Tian, Y., Yue, Z. & Xu, Y., Sep 2017, In : Plant Journal. 91, 6, p. 1108-1128 21 p.

Research output: Contribution to journalArticle

Punicaceae
Punica granatum
Genomics
biosynthesis
Genome
field capacity
Nicotiana tabacum
carbon dioxide
nitrogen
photosynthesis

TIC-Tox: A preliminary discussion on identifying the forcing agents of DBP-mediated toxicity of disinfected water

Plewa, M. J., Wagner, E. D. & Richardson, S. D., Aug 2017, In : Journal of Environmental Sciences. 58, p. 208-216 9 p.

Research output: Contribution to journalArticle

Disinfection
disinfection
Byproducts
Toxicity
toxicity

Tile drainage nitrate losses and corn yield response to fall and spring nitrogen management

Pittelkow, C. M., Clover, M. W., Hoeft, R. G., Nafziger, E. D., Warren, J. J., Gonzini, L. C. & Greer, K. D., Sep 1 2017, In : Journal of Environmental Quality. 46, 5, p. 1057-1064 8 p.

Research output: Contribution to journalArticle

yield response
Tile
Drainage
Nitrates
maize

Tillage and cover cropping effects on soil properties and crop production in Illinois

Dozier, I. A., Behnke, G. D., Davis, A. S., Nafziger, E. D. & Villamil, M. B., Jan 1 2017, In : Agronomy Journal. 109, 4, p. 1261-1270 10 p.

Research output: Contribution to journalArticle

cover crops
crop production
tillage
soil properties
crop yield

Time dependent genetic analysis links field and controlled environment phenotypes in the model C4grass Setaria

Feldman, M. J., Paul, R. E., Banan, D., Barrett, J. F., Sebastian, J., Yee, M. C., Jiang, H., Lipka, A. E., Brutnell, T. P., Dinneny, J. R., Leakey, A. D. B. & Baxter, I., Jan 1 2017, In : PLoS genetics. 13, 6, e1006841.

Research output: Contribution to journalArticle

Setaria (Poaceae)
Controlled Environment
genetic analysis
genetic techniques and protocols
phenotype

Toxicity of Wastewater with Elevated Bromide and Iodide after Chlorination, Chloramination, or Ozonation Disinfection

Dong, S., Masalha, N., Plewa, M. J. & Nguyen, T. H., Aug 15 2017, In : Environmental Science and Technology. 51, 16, p. 9297-9304 8 p.

Research output: Contribution to journalArticle

Ozonization
Disinfection
Chlorination
iodide
Iodides
Subcutaneous Fat
adipose tissue
Adipose Tissue
Holstein
Tissue

Transcriptome dynamics of Camellia sinensis in response to continuous salinity and drought stress

Zhang, Q., Cai, M., Yu, X., Wang, L., Guo, C., Ming, R. R. & Zhang, J., Aug 1 2017, In : Tree Genetics and Genomes. 13, 4, 78.

Research output: Contribution to journalArticle

Camellia sinensis
Droughts
drought stress
Salinity
Transcriptome

Two new PPX2 mutations associated with resistance to PPO-inhibiting herbicides in Amaranthus palmeri

Giacomini, D. A., Umphres, A. M., Nie, H., Mueller, T. C., Steckel, L. E., Young, B. G., Scott, R. C. & Tranel, P. J., Aug 2017, In : Pest Management Science. 73, 8, p. 1559-1563 5 p.

Research output: Contribution to journalArticle

Amaranthus palmeri
protoporphyrinogen oxidase
herbicides
mutation
fomesafen

Type VI secretion systems of Erwinia amylovora contribute to bacterial competition, virulence, and exopolysaccharide production

Tian, Y., Zhao, Y., Shi, L., Cui, Z., Hu, B. & Zhao, Y., Jun 2017, In : Phytopathology. 107, 6, p. 654-661 8 p.

Research output: Contribution to journalArticle

exopolysaccharides
Erwinia amylovora
virulence
mutants
levan