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The Evolutionary Mechanics of Domain Organization in Proteomes and the Rise of Modularity in the Protein World

Wang, M. & Caetano-Anolles, G., Jan 14 2009, In : Structure. 17, 1, p. 66-78 13 p.

Research output: Contribution to journalArticle

Proteome
Mechanics
Genome
Proteins
Censuses

The evolutionary significance of the long variable arm in transfer RNA

Sun, F. J. & Caetano-Anolles, G., Jan 1 2009, In : Complexity. 14, 5, p. 26-39 14 p.

Research output: Contribution to journalArticle

Amino acids
Biochemistry
Molecules
Bacteriophages
Transfer RNA

The FAR1 locus encodes a novel nuclear protein specific to phytochrome A signaling

Hudson, M., Ringli, C., Boylan, M. T. & Quail, P. H., Aug 1 1999, In : Genes and Development. 13, 15, p. 2017-2027 11 p.

Research output: Contribution to journalArticle

Phytochrome A
Phytochrome
Nuclear Proteins
Arabidopsis
Light

The fate of nitrogen-15 ammonium sulfate applied to Kentucky bluegrass and perennial ryegrass turfs

Engelsjord, M. E., Branham, B. E. & Horgan, B. P., Jul 2004, In : Crop Science. 44, 4, p. 1341-1347 7 p.

Research output: Contribution to journalArticle

Poa pratensis
thatch
Lolium perenne
ammonium sulfate
nitrogen fertilizers

The FHY3 and FAR1 genes encode transposase-related proteins involved in regulation of gene expression by the phytochrome A-signaling pathway

Hudson, M. E., Lisch, D. R. & Quail, P. H., May 1 2003, In : Plant Journal. 34, 4, p. 453-471 19 p.

Research output: Contribution to journalArticle

Phytochrome A
Transposases
gene expression regulation
Gene Expression Regulation
phytochrome

The fungicide captan reduces nuclear DNA content in maize seedlings

Rayburn, A. L., Pedersen, W. L. & McMurphy, L. M., 1993, In : Pesticide Science. 37, 1, p. 79-82 4 p.

Research output: Contribution to journalArticle

Captan
captan
Seedlings
nuclear genome
Zea mays

The genetic architecture of maize flowering time

Buckler, E. S., Holland, J. B., Bradbury, P. J., Acharya, C. B., Brown, P. J., Browne, C., Ersoz, E., Flint-Garcia, S., Garcia, A., Glaubitz, J. C., Goodman, M. M., Harjes, C., Guill, K., Kroon, D. E., Larsson, S., Lepak, N. K., Li, H., Mitchell, S. E., Pressoir, G., Peiffer, J. A. & 16 others, Rosas, M. O., Rocheford, T. R., Romay, M. C., Romero, S., Salvo, S., Villeda, H. S., Da Silva, H. S., Sun, Q., Tian, F., Upadyayula, N., Ware, D., Yates, H., Yu, J., Zhang, Z., Kresovich, S. & McMullen, M. D., Aug 17 2009, In : Science. 325, 5941, p. 714-718 5 p.

Research output: Contribution to journalArticle

Zea mays
Quantitative Trait Loci
Arabidopsis
Population

The genetic architecture of seed composition in soybean is refined by genome-wide association scans across multiple populations

Vaughn, J. N., Nelson, R. L., Song, Q., Cregan, P. B. & Li, Z., Jan 1 2014, In : G3: Genes, Genomes, Genetics. 4, 11, p. 2283-2294 12 p.

Research output: Contribution to journalArticle

Genome-Wide Association Study
Soybeans
Seeds
Essential Amino Acids
Population

The genetics of phytochrome signalling in Arabidopsis

Hudson, M. E., Jan 1 2000, In : Seminars in Cell and Developmental Biology. 11, 6, p. 475-483 9 p.

Research output: Contribution to journalArticle

Phytochrome
Arabidopsis
Signal Transduction
Plant Photoreceptors
Light Signal Transduction

The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication

Zhuang, W., Chen, H., Yang, M., Wang, J., Pandey, M. K., Zhang, C., Chang, W. C., Zhang, L., Zhang, X., Tang, R., Garg, V., Wang, X., Tang, H., Chow, C. N., Wang, J., Deng, Y., Wang, D., Khan, A. W., Yang, Q., Cai, T. & 58 others, Bajaj, P., Wu, K., Guo, B., Zhang, X., Li, J., Liang, F., Hu, J., Liao, B., Liu, S., Chitikineni, A., Yan, H., Zheng, Y., Shan, S., Liu, Q., Xie, D., Wang, Z., Khan, S. A., Ali, N., Zhao, C., Li, X., Luo, Z., Zhang, S., Zhuang, R., Peng, Z., Wang, S., Mamadou, G., Zhuang, Y., Zhao, Z., Yu, W., Xiong, F., Quan, W., Yuan, M., Li, Y., Zou, H., Xia, H., Zha, L., Fan, J., Yu, J., Xie, W., Yuan, J., Chen, K., Zhao, S., Chu, W., Chen, Y., Sun, P., Meng, F., Zhuo, T., Zhao, Y., Li, C., He, G., Zhao, Y., Wang, C., Kavikishor, P. B., Pan, R. L., Paterson, A. H., Wang, X., Ming, R. & Varshney, R. K., May 1 2019, In : Nature Genetics. 51, 5, p. 865-876 12 p.

Research output: Contribution to journalArticle

Open Access
Polyploidy
Karyotype
Fabaceae
Genome
Seeds

The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes

Masonbrink, R., Maier, T. R., Muppirala, U., Seetharam, A. S., Lord, E., Juvale, P. S., Schmutz, J., Johnson, N. T., Korkin, D., Mitchum, M. G., Mimee, B., Den Akker, S. E. V., Hudson, M., Severin, A. J. & Baum, T. J., Feb 7 2019, In : BMC genomics. 20, 1, 119.

Research output: Contribution to journalArticle

Open Access
Soybeans
Glycine
Cysts
Genome
Genes

The genome sequence of taurine cattle: A window to ruminant biology and evolution

Elsik, C. G., Tellam, R. L., Worley, K. C., Gibbs, R. A., Muzny, D. M., Weinstock, G. M., Adelson, D. L., Eichler, E. E., Elnitski, L., Guigó, R., Hamernik, D. L., Kappes, S. M., Lewin, H. A., Lynn, D. J., Nicholas, F. W., Reymond, A., Rijnkels, M., Skow, L. C., Zdobnov, E. M., Schook, L. & 288 others, Womack, J., Alioto, T., Antonarakis, S. E., Astashyn, A., Chappie, C. E., Chen, H. C., Chrast, J., Câmara, F., Ermolaeva, O., Henrichsen, C. N., Hlavina, W., Kapustin, Y., Kiryutin, B., Kitts, P., Kokocinski, F., Landrum, M., Maglott, D., Pruitt, K., Sapojnikov, V., Searle, S. M., Solovyev, V., Souvorov, A., Ucla, C., Wyss, C., Anzola, J. M., Gerlach, D., Elhaik, E., Graur, D., Reese, J. T., Edgar, R. C., McEwan, J. C., Payne, G. M., Raison, J. M., Junier, T., Kriventseva, E. V., Eyras, E., Plass, M., Donthu, R., Larkin, D. M., Reecy, J., Yang, M. Q., Chen, L., Cheng, Z., Chitko-McKown, C. G., Liu, G. E., Matukumalli, L. K., Song, J., Zhu, B., Bradley, D. G., Brinkman, F. S. L., Lau, L. P. L., Whiteside, M. D., Walker, A., Wheeler, T. T., Casey, T., German, J. B., Lemay, D. G., Maqbool, N. J., Molenaar, A. J., Seo, S., Stothard, P., Baldwin, C. L., Baxter, R., Brinkmeyer-Larigford, C. L., Brown, W. C., Childers, C. P., Connelley, T., Ellis, S. A., Fritz, K., Glass, E. J., Herzig, C. T. A., Livanainen, A., Lahmers, K. K., Bennett, A. K., Dickens, C. M., Gilbert, J. G. R., Hagen, D. E., Salih, H., Aerts, J., Caetano, A. R., Dalrymple, B., Garcia, J. F., Gill, C. A., Hiendleder, S. G., Memili, E., Spurlock, D., Williams, J. L., Alexander, L., Brownstein, M. J., Guan, L., Holt, R. A., Jones, S. J. M., Marra, M. A., Moore, R., Moore, S. S., Roberts, A., Taniguchi, M., Waterman, R. C., Chacko, J., Chandrabose, M. M., Cree, A., Dao, M. D., Dinh, H. H., Gabisi, R. A., Hines, S., Hume, J., Jhangiani, S. N., Joshi, V., Kovar, C. L., Lewis, L. R., Liu, Y. S., Lopez, J., Morgan, M. B., Nguyen, N. B., Okwuonu, G. O., Ruiz, S. J., Santibanez, J., Wright, R. A., Buhay, C., Ding, Y., Dugan-Rocha, S., Herdandez, J., Holder, M., Sabo, A., Egan, A., Goodell, J., Wilczek-Boney, K., Fowler, G. R., Hitchens, M. E., Lozado, R. J., Moen, C., Steffen, D., Warren, J. T., Zhang, J., Chiu, R., Schein, J. E., Durbin, K. J., Havlak, P., Jiang, H., Liu, Y., Qin, X., Ren, Y., Shen, Y., Song, H., Bell, S. N., Davis, C., Johnson, A. J., Lee, S., Nazareth, L. V., Patel, B. M., Pu, L. L., Vattathil, S., Williams, R. L., Curry, S., Hamilton, C., Sodergren, E., Wheeler, D. A., Barris, W., Bennett, G. L., Eggen, A., Green, R. D., Harhay, G. P., Hobbs, M., Jann, O., Keele, J. W., Kent, M. P., Lien, S., McKay, S. D., McWilliam, S., Ratnakumar, A., Schnabel, R. D., Smith, T., Snelling, W. M., Sonstegard, T. S., Stone, R. T., Sugimoto, Y., Takasuga, A., Taylor, J. F., Van Tassell, C. P., MacNeil, M. D., Abatepaulo, A. R. R., Abbey, C. A., Ahola, V., Almeida, L. G., Amadio, A. F., Anatriello, E., Bahadue, S. M., Biase, F. H., Boldt, C. R., Carroll, J. A., Carvalho, W. A., Cervelatti, E. P., Chacko, E., Chapin, J. E., Cheng, Y., Choi, J., Colley, A. J., DeCampos, T. A., De Donato, M., De Miranda Santos, I. K. F., De Oliveira, C. J. F., Deobald, H., Devinoy, E., Donohue, K. E., Dove, P., Eberlein, A., Fitzsimmons, C. J., Franzin, A. M., Garcia, G. R., Genini, S., Gladney, C. J., Grant, J. R., Greaser, M. L., Green, J. A., Hadsell, D. L., Hakimov, H. A., Halgren, R., Harrow, J. L., Hart, E. A., Hastings, N., Hernandez, M., Hu, Z. L., Iivanainen, A., Ingham, A., Iso-Touru, T., Jamis, C., Jensen, K., Kapetis, D., Kerr, T., Khalil, S. S., Khatib, H., Kolbehdari, D., Kumar, C. G., Kumar, D., Leach, R., Lee, J. C. M., Li, C., Logan, K. M., Malinverni, R., Marques, E., Martin, W. F., Martins, N. F., Maruyama, S. R., Mazza, R., McLean, K. L., Medrano, J. F., Moreno, B. T., More, D. D., Muntean, C. T., Nandakumar, H. P., Nogueira, M. F. G., Olsaker, I., Pant, S. D., Panzitta, F., Pastor, R. C. P., Poli, M. A., Poslusny, N., Rachagani, S., Ranganathan, S., Razpet, A., Riggs, P. K., Rincón, G., Rodriguez-Osorio, N., Rodriguez-Zas, S. L., Romero, N. E., Rosenwald, A., Sando, L., Schmutz, S. M., Shen, L., Sherman, L., Southey, B. R., Lutzow, Y. S., Sweedler, J. V., Tammen, I., Telugu, B. P. V. L., Urbanski, J. M., Utsunomiya, Y. T., Verschoor, C. P., Waardenberg, A. J., Wang, Z., Ward, R., WeiKard, R., Welsh, T. H., White, S. N., Wilming, L. G., Wunderlich, K. R., Yang, J. & Zhao, F. Q., Apr 24 2009, In : Science. 324, 5926, p. 522-528 7 p.

Research output: Contribution to journalArticle

Taurine
Ruminants
Genome
Genes
Genomic Segmental Duplications

The genomes of two key bumblebee species with primitive eusocial organization

Sadd, B. M., Barribeau, S. M., Bloch, G., de Graaf, D. C., Dearden, P., Elsik, C. G., Gadau, J., Grimmelikhuijzen, C. J. P., Hasselmann, M., Lozier, J. D., Robertson, H. M., Smagghe, G., Stolle, E., Van Vaerenbergh, M., Waterhouse, R. M., Bornberg-Bauer, E., Klasberg, S., Bennett, A. K., Câmara, F., Guigó, R. & 124 others, Hoff, K., Mariotti, M., Munoz-Torres, M., Murphy, T., Santesmasses, D., Amdam, G. V., Beckers, M., Beye, M., Biewer, M., Bitondi, M. M. G., Blaxter, M. L., Bourke, A. F. G., Brown, M. J. F., Buechel, S. D., Cameron, R., Cappelle, K., Carolan, J. C., Christiaens, O., Ciborowski, K. L., Clarke, D. F., Colgan, T. J., Collins, D. H., Cridge, A. G., Dalmay, T., Dreier, S., du Plessis, L., Duncan, E., Erler, S., Evans, J., Falcon, T., Flores, K., Freitas, F. C. P., Fuchikawa, T., Gempe, T., Hartfelder, K., Hauser, F., Helbing, S., Humann, F. C., Irvine, F., Jermiin, L. S., Johnson, C. E., Johnson, R. M., Jones, A. K., Kadowaki, T., Kidner, J. H., Koch, V., Köhler, A., Kraus, F. B., Lattorff, H. M. G., Leask, M., Lockett, G. A., Mallon, E. B., Antonio, D. S. M., Marxer, M., Meeus, I., Moritz, R. F. A., Nair, A., Näpflin, K., Nissen, I., Niu, J., Nunes, F. M. F., Oakeshott, J. G., Osborne, A., Otte, M., Pinheiro, D. G., Rossié, N., Rueppell, O., Santos, C. G., Schmid-Hempel, R., Schmitt, B. D., Schulte, C., Simões, Z. L. P., Soares, M. P. M., Swevers, L., Winnebeck, E. C., Wolschin, F., Yu, N., Zdobnov, E. M., Aqrawi, P. K., Blankenburg, K. P., Coyle, M., Francisco, L., Hernandez, A. G., Holder, M., Hudson, M. E., Jackson, L. R., Jayaseelan, J., Joshi, V., Kovar, C., Lee, S. L., Mata, R., Mathew, T., Newsham, I. F., Ngo, R., Okwuonu, G., Pham, C., Pu, L. L., Saada, N., Santibanez, J., Simmons, D. N., Thornton, R., Venkat, A., Walden, K. K. O., Wu, Y. Q., Debyser, G., Devreese, B., Asher, C., Blommaert, J., Chipman, A. D., Chittka, L., Fouks, B., Liu, J., O'Neill, M. P., Sumner, S., Puiu, D., Qu, J., Salzberg, S. L., Scherer, S. E., Muzny, D. M., Richards, S., Robinson, G. E., Gibbs, R. A., Schmid-Hempel, P. & Worley, K. C., Apr 24 2015, In : Genome biology. 16, 1, 76.

Research output: Contribution to journalArticle

Bombus
genome
Organizations
Genome
honeybee

The growth of soybean under free air [CO2] enrichment (FACE) stimulates photosynthesis while decreasing in vivo Rubisco capacity

Bernacchi, C. J., Morgan, P. B., Ort, D. R. & Long, S. P., Jan 1 2005, In : Planta. 220, 3, p. 434-446 13 p.

Research output: Contribution to journalArticle

Oxygenases
Photosynthesis
ribulose 1,5-diphosphate
oxygenases
Soybeans

The heritability of antinociception: Common pharmacogenetic mediation of five neurochemically distinct analgesics

Wilson, S. G., Smith, S. B., Chesler, E. J., Melton, K. A., Haas, J. J., Mitton, B., Strasburg, K., Hubert, L., Rodriguez-Zas, S. L. & Mogil, J. S., Feb 1 2003, In : Journal of Pharmacology and Experimental Therapeutics. 304, 2, p. 547-559 13 p.

Research output: Contribution to journalArticle

Pharmacogenetics
Analgesics
Morphine
epibatidine
Nociception

The identification and characterization of two dominant r1 haplotype-specific inhibitors of aleurone color in Zea mays

Stinard, P. S. & Sachs, M. M., Nov 1 2002, In : Journal of Heredity. 93, 6, p. 421-428 8 p.

Research output: Contribution to journalArticle

Haplotypes
Zea mays
haplotypes
Color
color

The impact of disinfection Ct values on cytotoxicity of agricultural wastewaters: Ozonation vs. chlorination

Dong, S., Massalha, N., Plewa, M. J. & Nguyen, T. H., Nov 1 2018, In : Water Research. 144, p. 482-490 9 p.

Research output: Contribution to journalArticle

Ozonization
Disinfection
Chlorination
Cytotoxicity
chlorination

The impact of iodinated X-ray contrast agents on formation and toxicity of disinfection by-products in drinking water

Jeong, C. H., Machek, E. J., Shakeri, M., Duirk, S. E., Ternes, T. A., Richardson, S. D., Wagner, E. D. & Plewa, M. J., Aug 2017, In : Journal of Environmental Sciences. 58, p. 173-182 10 p.

Research output: Contribution to journalArticle

Disinfection
Iopamidol
Potable water
Drinking Water
disinfection

The Impact of Living and Cover Crop Mulch Systems on Pests and Yields of Snap Beans and Cabbage

Masiunas, J., Eastburn, D., Mwaja, V. N. & Eastman, C. E., Jan 11 1997, In : Journal of Sustainable Agriculture. 9, 2-3, p. 61-89 29 p.

Research output: Contribution to journalArticle

mulches
cover crop
green beans
mulch
cover crops
Photosynthesis
Chlorophyll
antennae
photosynthesis
canopy

The impact of oxygen on metabolic evolution: A chemoinformatic investigation

Jiang, Y. Y., Kong, D. X., Qin, T., Li, X., Caetano-Anollés, G. & Zhang, H. Y., Mar 1 2012, In : PLoS computational biology. 8, 3, e1002426.

Research output: Contribution to journalArticle

Metabolites
Oxygen
metabolite
metabolites
oxygen

The impact of rye cover crops on weed populations in a tomato cropping system

Masiunas, J. B., Weston, L. A. & Weller, S. C., Jan 1 1995, In : Weed Science. 43, 2, p. 318-323 6 p.

Research output: Contribution to journalArticle

cover crops
rye
cropping systems
weeds
tomatoes

The Impact of Rye Cover Crops on Weeds, Insects, and Diseases in Snap Bean Cropping Systems

Bottenberg, H., Masiunas, J., Eastman, C. & Eastburn, D. M., Jan 11 1997, In : Journal of Sustainable Agriculture. 9, 2-3, p. 131-155 25 p.

Research output: Contribution to journalArticle

cover crop
green beans
mulch
cover crops
rye

The impact of water management practices on subtropical pasture methane emissions and ecosystem service payments

Chamberlain, S. D., Groffman, P. M., Boughton, E. H., Gomez-Casanovas, N., DeLucia, E. H., Bernacchi, C. J. & Sparks, J. P., Jun 2017, In : Ecological Applications. 27, 4, p. 1199-1209 11 p.

Research output: Contribution to journalArticle

ecosystem service
water management
management practice
pasture
methane

The impacts of fluctuating light on crop performance

Slattery, R. A., Walker, B. J., Weber, A. P. M. & Ort, D. R., Feb 2018, In : Plant physiology. 176, 2, p. 990-1003 14 p.

Research output: Contribution to journalArticle

Light
Photosynthesis
crops
canopy
C4 photosynthesis

The importance of phenolic metabolism to limit the growth of Phakopsora pachyrhizi

Lygin, A. V., Li, S., Vittal, R., Widholm, J. M., Hartman, G. L. & Lozovaya, V. V., Dec 1 2009, In : Phytopathology. 99, 12, p. 1412-1420 9 p.

Research output: Contribution to journalArticle

Phakopsora pachyrhizi
soybeans
metabolism
genotype
soybean rust

The importance of space, time, and stochasticity to the demography and management of Alliaria petiolata

Evans, J. A., Davis, A. S., Raghu, S., Ragavendran, A., Landis, D. A. & Schemske, D. W., Jul 2012, In : Ecological Applications. 22, 5, p. 1497-1511 15 p.

Research output: Contribution to journalArticle

biocontrol agent
stochasticity
demography
fecundity
population modeling

The importance of using realistic evolutionary models for retrodicting proteomes

Kim, K. M., Nasir, A. & Caetano-Anollés, G., Apr 1 2014, In : Biochimie. 99, 1, p. 129-137 9 p.

Research output: Contribution to journalArticle

Planetary Evolution
Proteome
Molecular Models
Molecular Evolution
Phylogeny

The important but weakening maize yield benefit of grain filling prolongation in the US Midwest

Zhu, P., Jin, Z., Zhuang, Q., Ciais, P., Bernacchi, C., Wang, X., Makowski, D. & Lobell, D., Oct 2018, In : Global change biology. 24, 10, p. 4718-4730 13 p.

Research output: Contribution to journalArticle

maize
food security
Crops
Drought
crop yield

The influence of drought and heat stress on long-term carbon fluxes of bioenergy crops grown in the Midwestern USA

Joo, E., Hussain, M. Z., Zeri, M., Masters, M. D., Miller, J. N., Gomez-Casanovas, N., DeLucia, E. H. & Bernacchi, C. J., Sep 1 2016, In : Plant Cell and Environment. 39, 9, p. 1928-1940 13 p.

Research output: Contribution to journalArticle

Carbon Cycle
Droughts
energy crops
Miscanthus
Ecosystem

The influence of photosynthetic acclimation to rising CO2 and warmer temperatures on leaf and canopy photosynthesis models

Bagley, J., Rosenthal, D. M., Ruiz-Vera, U. M., Siebers, M. H., Kumar, P., Ort, D. R. & Bernacchi, C. J., Feb 2015, In : Global Biogeochemical Cycles. 29, 2, p. 194-206 13 p.

Research output: Contribution to journalArticle

Photosynthesis
acclimation
photosynthesis
canopy
temperature

The inheritance of a branching type in soybean

Nelson, R., Jan 1 1996, In : Crop Science. 36, 5, p. 1150-1152 3 p.

Research output: Contribution to journalArticle

branching
inheritance (genetics)
soybeans
branches
loci

The Inheritance Pattern of 24 nt siRNA Clusters in Arabidopsis Hybrids Is Influenced by Proximity to Transposable Elements

Li, Y., Varala, K., Moose, S. P. & Hudson, M. E., Oct 31 2012, In : PloS one. 7, 10, e47043.

Research output: Contribution to journalArticle

Inheritance Patterns
DNA Transposable Elements
small interfering RNA
Arabidopsis
transposons

The interaction of soybean aphids and soybean cyst nematodes on selected resistant and susceptible soybean lines

Heeren, J. R., Steffey, K. L., Tinsley, N. A., Estes, R. E., Niblack, T. L. & Gray, M., Nov 1 2012, In : Journal of Applied Entomology. 136, 9, p. 646-655 10 p.

Research output: Contribution to journalArticle

Aphis glycines
Heterodera glycines
pests
soybeans
Aphidoidea

The interaction of the novel 30C02 cyst nematode effector protein with a plant β-1,3-endoglucanase may suppress host defence to promote parasitism

Hamamouch, N., Li, C., Hewezi, T., Baum, T. J., Mitchum, M. G., Hussey, R. S., Vodkin, L. O. & Davis, E. L., Jun 13 2012, In : Journal of experimental botany. 63, 10, p. 3683-3696 14 p.

Research output: Contribution to journalArticle

cyst nematodes
Cellulase
endo-1,4-beta-glucanase
Cysts
parasitism

The involvement of the photoinhibition of photosystem II and impaired membrane energization in the reduced quantum yield of carbon assimilation in chilled maize

Ortiz-Lopez, A., Nie, G. Y., Ort, D. R. & Baker, N. R., Apr 1990, In : Planta. 181, 1, p. 78-84 7 p.

Research output: Contribution to journalArticle

Photosystem II Protein Complex
photoinhibition
photosystem II
Zea mays
Carbon

The Kalanchoë genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism

Yang, X., Hu, R., Yin, H., Jenkins, J., Shu, S., Tang, H., Liu, D., Weighill, D. A., Cheol Yim, W., Ha, J., Heyduk, K., Goodstein, D. M., Guo, H. B., Moseley, R. C., Fitzek, E., Jawdy, S., Zhang, Z., Xie, M., Hartwell, J., Grimwood, J. & 29 others, Abraham, P. E., Mewalal, R., Beltrán, J. D., Boxall, S. F., Dever, L. V., Palla, K. J., Albion, R., Garcia, T., Mayer, J. A., Don Lim, S., Man Wai, C., Peluso, P., Van Buren, R., De Paoli, H. C., Borland, A. M., Guo, H., Chen, J. G., Muchero, W., Yin, Y., Jacobson, D. A., Tschaplinski, T. J., Hettich, R. L., Ming, R., Winter, K., Leebens-Mack, J. H., Smith, J. A. C., Cushman, J. C., Schmutz, J. & Tuskan, G. A., Dec 1 2017, In : Nature communications. 8, 1, 1899.

Research output: Contribution to journalArticle

genome
metabolism
Metabolism
Genes
Genome

The maize enr system of r1 haplotype-specific aleurone color enhancement factors

Stinard, P. S., Kermicle, J. L. & Sachs, M. M., Feb 20 2009, In : Journal of Heredity. 100, 2, p. 217-228 12 p.

Research output: Contribution to journalArticle

Haplotypes
Zea mays
Color
Alleles

The Maize macrohairless1 Locus Specifically Promotes Leaf Blade Macrohair Initiation and Responds to Factors Regulating Leaf Identity

Moose, S. P., Lauter, N. & Carlson, S. R., Mar 1 2004, In : Genetics. 166, 3, p. 1451-1461 11 p.

Research output: Contribution to journalArticle

Zea mays
Trichomes
Chromosomes, Human, Pair 9
Morphogenesis
Insects

The maize O2 and PBF proteins act additively to promote transcription from storage protein gene promoters in rice endosperm cells

Hwang, Y. S., Ciceri, P., Parsons, R. L., Moose, S. P., Schmidt, R. J. & Huang, N., Oct 2004, In : Plant and Cell Physiology. 45, 10, p. 1509-1518 10 p.

Research output: Contribution to journalArticle

Prolamins
Endosperm
prolamins
storage proteins
endosperm

The MANAGE Drain Concentration database: A new tool compiling North American drainage nutrient concentrations

Hertzberger, A., Pittelkow, C. M., Harmel, R. D. & Christianson, L. E., May 1 2019, In : Agricultural Water Management. 216, p. 113-117 5 p.

Research output: Contribution to journalArticle

Open Access
drain
drainage
nutrient content
nutrient loss
nutrient

The Natural History of Biocatalytic Mechanisms

Nath, N., Mitchell, J. B. O. & Caetano-Anollés, G., May 2014, In : PLoS computational biology. 10, 5, e1003642.

Research output: Contribution to journalArticle

Natural History
natural history
Fold
Enzymes
fold

The natural history of molecular functions inferred from an extensive phylogenomic analysis of gene ontology data

Koc, I. & Caetano-Anolles, G., May 2017, In : PloS one. 12, 5, e0176129.

Research output: Contribution to journalArticle

Gene Ontology
Phylogeny
Natural History
natural history
Ontology

The natural history of transfer RNA and its interactions with the ribosome

Caetano-Anollés, G. & Sun, F. J., Jan 1 2014, In : Frontiers in Genetics. 5, MAY, 127.

Research output: Contribution to journalArticle

Transfer RNA
Natural History
Ribosomes
Protein Biosynthesis
Genetic Code

The non-photochemical reduction of plastoquinone in leaves

Groom, Q. J., Kramer, D. M., Crofts, A. R. & Ort, D. R., Jun 1 1993, In : Photosynthesis research. 36, 3, p. 205-215 11 p.

Research output: Contribution to journalArticle

Plastoquinone
Amaranthus
malic enzyme
far-red light
photosystem I

The nonselective nature of a modified single-seed descent breeding procedure

Gourmet, C., Kolb, F. L., Brown, C. M., Smyth, C. A., Biradar, D. P. & Rayburn, A. L., Jan 1 1997, In : Crop Science. 37, 5, p. 1434-1437 4 p.

Research output: Contribution to journalArticle

Barley yellow dwarf virus
breeding
seeds
nuclear genome
Spermatophytina

The nucleotide sequence of apple mosaic virus coat protein gene has no similarity with other Bromoviridae coat protein genes

Alrefai, R. H., Shiel, P. J., Domier, L. L., D'Arcy, C. J., Berger, P. H. & Korban, S. S., Jan 1 1994, In : Journal of General Virology. 75, 10, p. 2847-2850 4 p.

Research output: Contribution to journalArticle

Bromoviridae
Mosaic Viruses
Capsid Proteins
Malus
Ilarvirus

The organization of domains in proteins obeys Menzerath-Altmann's law of language

Shahzad, K., Mittenthal, J. E. & Caetano-Anollés, G., Aug 11 2015, In : BMC Systems Biology. 9, 1, 44.

Research output: Contribution to journalArticle

Proteome
Language
Organizations
Proteins
Protein

The origin and evolution of tRNA inferred from phylogenetic analysis of structure

Sun, F. J. & Caetano-Anollés, G., Jan 1 2008, In : Journal of Molecular Evolution. 66, 1, p. 21-35 15 p.

Research output: Contribution to journalArticle

Transfer RNA
phylogenetics
RNA
phylogeny
genetic code

The origin of bermudagrass (Cynodon) off-types inferred by DNA amplification fingerprinting

Caetano-Anollés, G., Callahan, L. M. & Gresshoff, P. M., Jan 1 1997, In : Crop Science. 37, 1, p. 81-87 7 p.

Research output: Contribution to journalArticle

Cynodon
Cynodon dactylon
cultivars
DNA
genetic relationships