Research Output 1975 2020

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2019

Karyotype variations among date palm (Phoenix dactylifera L.) cultivars of Sindh, Pakistan

Jatt, T., Markhand, G. S., Rayburn, L., Ming, R., Jatoi, M. A. & Mirbahar, A. A., Jan 1 2019, In : Sarhad Journal of Agriculture. 35, 3, p. 708-718 11 p.

Research output: Contribution to journalArticle

Open Access
Phoenix dactylifera
Pakistan
Karyotype
karyotyping
Chromosomes

Knowledge, attitudes, and perceived barriers towards genetic testing across three rural Illinois communities

Fogleman, A. J., Zahnd, W. E., Lipka, A. E., Malhi, R. S., Ganai, S., Delfino, K. R. & Jenkins, W. D., Jul 4 2019, In : Journal of Community Genetics. 10, 3, p. 417-423 7 p.

Research output: Contribution to journalArticle

Genetic Testing
Rural Population
Computer Security
Precision Medicine
Telemedicine

Landscape and local site variables differentially influence pollinators and pollination services in urban agricultural sites

Bennett, A. B. & Lovell, S., Feb 2019, In : PloS one. 14, 2, e0212034.

Research output: Contribution to journalArticle

Open Access
Pollination
Bees
Biodiversity
pollinating insects
Apoidea

Length of poly(A) tail affects transcript infectivity of three ZYMV symptom variants differing at only five amino acid positions

Kim, B., Cho, I. S., Kim, I. H., Choi, G. W., Ju, H. K., Hu, W. X., Oh, J. P., Kim, J. K., Seo, E., Domier, L. L., Hammond, J. & Lim, H. S., Nov 1 2019, In : Journal of Plant Pathology. 101, 4, p. 1187-1193 7 p.

Research output: Contribution to journalArticle

messenger RNA
signs and symptoms (plants)
pathogenicity
clones
amino acids

Long-term efficacy of annual bluegrass control strategies on golf course putting greens

Patton, A. J., Braun, R. C., Schortgen, G. P., Weisenberger, D. V., Branham, B. E., Sharp, B., Sousek, M. D., Gaussoin, R. E. & Reicher, Z. J., Sep 1 2019, In : Crop, Forage and Turfgrass Management. 5, 1, 180068.

Research output: Contribution to journalArticle

Poa annua
golf course
golf courses
herbicide
sodium

Long-term N fertilization decreased diversity and altered the composition of soil bacterial and archaeal communities

Sun, R., Zhang, P., Riggins, C. W., Zabaloy, M. C., Rodriguez-Zas, S. L. & Villamil, M. B., Sep 23 2019, In : Agronomy. 9, 10, 574.

Research output: Contribution to journalArticle

Open Access
Synergistetes
microbial communities
Euryarchaeota
soil
Firmicutes

Long-term N fertilization imbalances potential N acquisition and transformations by soil microbes

Huang, L., Riggins, C. W., Rodríguez-Zas, S., Zabaloy, M. C. & Villamil, M. B., Nov 15 2019, In : Science of the Total Environment. 691, p. 562-571 10 p.

Research output: Contribution to journalArticle

Open Access
Nitrification
maize
Soils
Genes
Denitrification

Mai1 Protein Acts Between Host Recognition of Pathogen Effectors and Mitogen-Activated Protein Kinase Signaling

Roberts, R., Hind, S. R., Pedley, K. F., Diner, B. A., Szarzanowicz, M. J., Luciano-Rosario, D., Majhi, B. B., Popov, G., Sessa, G., Oh, C. S. & Martin, G. B., Nov 1 2019, In : Molecular plant-microbe interactions : MPMI. 32, 11, p. 1496-1507 12 p.

Research output: Contribution to journalArticle

Mitogen-Activated Protein Kinases
mitogen-activated protein kinase
Cell Death
apoptosis
pathogens

MANET 3.0: Hierarchy and modularity in evolving metabolic networks

Mughal, F. & Caetano-Anollés, G., Oct 24 2019, In : PloS one. 14, 10, e0224201.

Research output: Contribution to journalArticle

Open Access
Metabolic Networks and Pathways
ancestry
Hierarchical systems
Enzymes
enzymes

Many plant pathogenic Pseudomonas savastanoi pv glycinea isolates possess an inactive quorum sensing ahlR gene via a point mutation

Degrassi, G., Mortato, V., Devescovi, G., Hoshino, R., Chatnaparat, T., Kojic, M., Carpentieri-Pipolo, V., Zhao, Y. & Venturi, V., Jun 1 2019, In : FEMS microbiology letters. 366, 12

Research output: Contribution to journalArticle

Open Access
Quorum Sensing
Pseudomonas
Point Mutation
Acyl-Butyrolactones
Genes

Markov chain Monte Carlo simulation of a Bayesian mixture model for gene network inference

Ko, Y., Kim, J. & Rodriguez-Zas, S. L., May 1 2019, In : Genes and Genomics. 41, 5, p. 547-555 9 p.

Research output: Contribution to journalArticle

Markov Chains
Gene Regulatory Networks
Markov processes
Genes
Biological Phenomena

Metabolite and transcript profiling of Guinea grass (Panicum maximum Jacq) response to elevated [CO 2 ] and temperature

Wedow, J. M., Yendrek, C. R., Mello, T. R., Creste, S., Martinez, C. A. & Ainsworth, E. A., Apr 1 2019, In : Metabolomics. 15, 4, 51.

Research output: Contribution to journalArticle

Open Access
Guinea
Panicum
Carbon Monoxide
Metabolites
Poaceae

Mitochondrial genome in Hypsizygus marmoreus and its evolution in Dikarya

Wang, G., Lin, J., Shi, Y., Chang, X., Wang, Y., Guo, L., Wang, W., Dou, M., Deng, Y., Ming, R. & Zhang, J., Oct 22 2019, In : BMC genomics. 20, 1, 765.

Research output: Contribution to journalArticle

Open Access
Mitochondrial Genome
Gene Order
Agaricales
Mitochondria
Tricholoma

Multienvironment and multitrait genomic selection models in unbalanced early-generation wheat yield trials

Ward, B. P., Brown-Guedira, G., Tyagi, P., Kolb, F. L., van Sanford, D. A., Sneller, C. H. & Griffey, C. A., Mar 1 2019, In : Crop Science. 59, 2, p. 491-507 17 p.

Research output: Contribution to journalArticle

Open Access
marker-assisted selection
wheat
genotype
heritability
spatial variation

Multiple modes of convergent adaptation in the spread of glyphosate-resistant Amaranthus tuberculatus

Kreiner, J. M., Giacomini, D. A., Bemm, F., Waithaka, B., Regalado, J., Lanz, C., Hildebrandt, J., Sikkema, P. H., Tranel, P. J., Weigel, D., Stinchcombe, J. R. & Wright, S. I., Oct 15 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 42, p. 21076-21084 9 p.

Research output: Contribution to journalArticle

Open Access
glyphosate
Herbicide Resistance
Amaranthus
Midwestern United States
Haplotypes

Multivariate genomic selection and potential of rapid indirect selection with speed breeding in spring wheat

Watson, A., Hickey, L. T., Christopher, J., Rutkoski, J., Poland, J. & Hayes, B. J., Sep 1 2019, In : Crop Science. 59, 5, p. 1945-1959 15 p.

Research output: Contribution to journalArticle

spring wheat
marker-assisted selection
breeding
grain yield
flowering

New grain P and K concentration values for Illinois field crops

Villamil, M. B., Nafziger, E. D. & Behnke, G. D., Sep 1 2019, In : Crop, Forage and Turfgrass Management. 5, 1, 180090.

Research output: Contribution to journalArticle

field crops
normal values
soybean
crop
nutrient

Nitrogen provisioned and recycled by cover crops in monoculture and mixture across two organic farms

Holmes, A. A., Thompson, A. A., Lovell, S. T., Villamil, M. B., Yannarell, A. C., Dawson, J. O. & Wortman, S. E., Dec 1 2019, In : Nutrient Cycling in Agroecosystems. 115, 3, p. 441-453 13 p.

Research output: Contribution to journalArticle

cover crop
monoculture
cover crops
farm
farms

Nonallelic homologous recombination events responsible for copy number variation within an RNA silencing locus

Cho, Y. B., Jones, S. I. & Vodkin, L. O., Jan 1 2019, In : Plant Direct. 3, 8, e00162.

Research output: Contribution to journalArticle

Open Access
naringenin-chalcone synthase
Homologous Recombination
homologous recombination
RNA Interference
RNA interference

Nutritional evaluation of 3 types of novel ethanol coproducts

Corray, S., Utterback, P., Ramchandran, D., Singh, V., Moose, S. P. & Parsons, C. M., Jul 1 2019, In : Poultry science. 98, 7, p. 2933-2939 7 p.

Research output: Contribution to journalArticle

coproducts
distillers grains
ethanol
roosters
digestibility

Opioid-Induced Hyperalgesia Is Associated with Dysregulation of Circadian Rhythm and Adaptive Immune Pathways in the Mouse Trigeminal Ganglia and Nucleus Accumbens

Zhang, P., Moye, L. S., Southey, B. R., Dripps, I., Sweedler, J. V., Pradhan, A. & Rodriguez-Zas, S. L., Dec 1 2019, In : Molecular Neurobiology. 56, 12, p. 7929-7949 21 p.

Research output: Contribution to journalArticle

Trigeminal Nuclei
Trigeminal Ganglion
Hyperalgesia
Nucleus Accumbens
Circadian Rhythm

Optimum plant density for crowding stress tolerant processing sweet corn

Dhaliwal, D. S. & Williams, M. M., Jan 1 2019, In : PloS one. 14, 9, e0223107.

Research output: Contribution to journalArticle

Open Access
sweetcorn
plant density
Zea mays
ears
Ear

Papaya CpbHLH1/2 regulate carotenoid biosynthesis-related genes during papaya fruit ripening

Zhou, D., Shen, Y., Zhou, P., Fatima, M., Lin, J., Yue, J., Zhang, X., Chen, L. Y. & Ming, R. R., Dec 1 2019, In : Horticulture Research. 6, 1, 80.

Research output: Contribution to journalArticle

Open Access
Carica
Biosynthesis
papayas
Carotenoids
Fruits

Papaya sex chromosome evolution and domestication

Zerpa-Catanho, D. P. & Ming, R., Jan 1 2019, In : Acta Horticulturae. 1250, p. 129-137 9 p.

Research output: Contribution to journalArticle

sex chromosomes
papayas
domestication
Y chromosome
X chromosome

Patterns of Genome-Wide Variation, Population Differentiation and SNP Discovery of the Red Banded Stink Bug (Piezodorus guildinii)

Zucchi, M. I., Cordeiro, E. M. G., Allen, C., Novello, M., Viana, J. P. G., Brown, P. J., Manjunatha, S., Omoto, C., Pinheiro, J. B. & Clough, S. J., Dec 1 2019, In : Scientific reports. 9, 1, 14480.

Research output: Contribution to journalArticle

Open Access
Single Nucleotide Polymorphism
Brazil
Gene Flow
Genetic Structures
Genetic Selection

Photosynthesis across African cassava germplasm is limited by Rubisco and mesophyll conductance at steady state, but by stomatal conductance in fluctuating light

De Souza, A. P., Wang, Y., Orr, D. J., Carmo-Silva, E. & Long, S. P., Jan 1 2019, (Accepted/In press) In : New Phytologist.

Research output: Contribution to journalArticle

Open Access
Ribulose-Bisphosphate Carboxylase
Manihot
Photosynthesis
ribulose-bisphosphate carboxylase
cassava

Physical exertion exacerbates decline in the musculature of an animal model of Duchenne muscular dystrophy

Hughes, K. J., Rodriguez, A., Flatt, K. M., Ray, S., Schuler, A., Rodemoyer, B., Veerappan, V., Cuciarone, K., Kullman, A., Lim, C., Gutta, N., Vemuri, S., Andriulis, V., Niswonger, D., Barickman, L., Stein, W., Singhvi, A., Schroeder, N. E. & Vidal-Gadea, A. G., Feb 26 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 9, p. 3508-3517 10 p.

Research output: Contribution to journalArticle

Physical Exertion
Duchenne Muscular Dystrophy
Animal Models
Muscles
Calcium

Plant and soil microfaunal biodiversity across the borders between arable and forest ecosystems in a Mediterranean landscape

Jackson, L. E., Bowles, T. M., Ferris, H., Margenot, A. J., Hollander, A., Garcia-Palacios, P., Daufresne, T. & Sánchez-Moreno, S., Apr 2019, In : Applied Soil Ecology. 136, p. 122-138 17 p.

Research output: Contribution to journalArticle

Biodiversity
forest ecosystems
forest ecosystem
Ecosystem
nematode

Poly(lactic-co-glycolic acid) Nanoparticles Loaded with Callistemon citrinus Phenolics Exhibited Anticancer Properties against Three Breast Cancer Cell Lines

Ahmed, R., Tariq, M., Ahmad, I. S., Fouly, H., Fakhar-I-Abbas, Hasan, A. & Kushad, M., Jan 1 2019, In : Journal of Food Quality. 2019, 2638481.

Research output: Contribution to journalArticle

Open Access
Callistemon citrinus
glycolic acid
Berberine
Insurance Benefits
nanoparticles

polyRAD: Genotype calling with uncertainty from sequencing data in polyploids and diploids

Clark, L. V., Lipka, A. E. & Sacks, E. J., Mar 1 2019, In : G3: Genes, Genomes, Genetics. 9, 3, p. 663-673 11 p.

Research output: Contribution to journalArticle

Open Access
Polyploidy
Diploidy
Uncertainty
Genotype
Population

Population structure of Miscanthus sacchariflorus reveals two major polyploidization events, tetraploid-mediated unidirectional introgression from diploid M. sinensis, and diversity centred around the Yellow Sea

Clark, L. V., Jin, X., Petersen, K. K., Anzoua, K. G., Bagmet, L., Chebukin, P., Deuter, M., Dzyubenko, E., Dzyubenko, N., Heo, K., Johnson, D. A., Jørgensen, U., Kjeldsen, J. B., Nagano, H., Peng, J., Sabitov, A., Yamada, T., Yoo, J. H., Yu, C. Y., Long, S. P. & 1 others, Sacks, E. J., Oct 29 2019, In : Annals of botany. 124, 4, p. 731-748 18 p.

Research output: Contribution to journalArticle

Open Access
Miscanthus sacchariflorus
Miscanthus sinensis
Yellow Sea
introgression
tetraploidy

Predicting light-induced stomatal movements based on the redox state of plastoquinone: theory and validation

Kromdijk, J., Głowacka, K. & Long, S. P., Jul 1 2019, In : Photosynthesis research. 141, 1, p. 83-97 15 p.

Research output: Contribution to journalArticle

Plastoquinone
stomatal movement
Oxidation-Reduction
Light
stomatal conductance

Predominant N-Haloacetamide and Haloacetonitrile Formation in Drinking Water via the Aldehyde Reaction Pathway

Vu, T. N., Kimura, S. Y., Plewa, M. J., Richardson, S. D. & Marinas, B. J., Jan 15 2019, In : Environmental Science and Technology. 53, 2, p. 850-859 10 p.

Research output: Contribution to journalArticle

aldehyde
Aldehydes
Drinking Water
disinfection
drinking water

Recent polyploidization events in three Saccharum founding species

Zhang, J., Zhang, Q., Li, L., Tang, H., Zhang, Q., Chen, Y., Arrow, J., Zhang, X., Wang, A., Miao, C. & Ming, R., Jan 2019, In : Plant Biotechnology Journal. 17, 1, p. 264-274 11 p.

Research output: Contribution to journalArticle

Saccharum
Genome
genome
Sorghum
linkage groups

Recent warming has resulted in smaller gains in net carbon uptake in northern high latitudes

Zhu, P., Zhuang, Q., Welp, L., Ciais, P., Heimann, M., Peng, B., Li, W., Bernacchi, C., Roedenbeck, C. & Keenan, T. F., Sep 1 2019, In : Journal of Climate. 32, 18, p. 5849-5863 15 p.

Research output: Contribution to journalArticle

warming
carbon
drawdown
carbon balance
temperature

Recommendations for performance optimizations when using GATK3.8 and GATK4

Heldenbrand, J. R., Baheti, S., Bockol, M. A., Drucker, T. M., Hart, S. N., Hudson, M. E., Iyer, R. K., Kalmbach, M. T., Kendig, K. I., Klee, E. W., Mattson, N. R., Wieben, E. D., Wiepert, M., Wildman, D. E. & Mainzer, L. S., Nov 8 2019, In : BMC bioinformatics. 20, 1, 557.

Research output: Contribution to journalArticle

Open Access
Performance Optimization
Recommendations
Genes
Cost effectiveness
Electric sparks

Registration of ‘erisman’ soft red winter wheat

Krill, A. M., Smith, N. J., Handal, E. A. & Kolb, F. L., Jan 2019, In : Journal of Plant Registrations. 13, 1, p. 58-62 5 p.

Research output: Contribution to journalArticle

soft red winter wheat
Fusarium head blight
Soil-borne wheat mosaic virus
Organic Agriculture
Triticum

Relationship between invasive brown marmorated stink bug (halyomorpha halys) and fumonisin contamination of field corn in the Mid-Atlantic U.S

Opoku, J., Kleczewski, N. M., Hamby, K. A., Herbert, D. A., Malone, S. & Mehl, H. L., Jun 2019, In : Plant disease. 103, 6, p. 1189-1195 7 p.

Research output: Contribution to journalArticle

Halyomorpha halys
fumonisins
corn
Fusarium
infection

Relationship of phenolic composition of selected purple maize (Zea mays L.) genotypes with their anti-inflammatory, anti-adipogenic and anti-diabetic potential

Zhang, Q., Demejia, E., Luna-Vital, D., Tao, T., Chandrasekaran, S., Chatham, L., Juvik, J. A., Singh, V. & Kumar, D., Aug 15 2019, In : Food Chemistry. 289, p. 739-750 12 p.

Research output: Contribution to journalArticle

Anthocyanins
Glucosides
Adipocytes
Zea mays
glucosides

Residue and agronomic management to reduce the continuous corn yield penalty

Vogel, A. M. & Below, F. E., Sep 20 2019, In : Agronomy. 9, 10, 567.

Research output: Contribution to journalArticle

Open Access
corn
management systems
soybeans
blisters
degradation

Saccharum × Miscanthus intergeneric hybrids (miscanes) exhibit greater chilling tolerance of C4 photosynthesis and postchilling recovery than sugarcane (Saccharum spp. hybrids)

Kar, S., Zhang, N., Nakashima, T., Villanueva-Morales, A., Stewart, J. R., Sacks, E. J., Terajima, Y. & Yamada, T., Nov 1 2019, In : GCB Bioenergy. 11, 11, p. 1318-1333 16 p.

Research output: Contribution to journalArticle

Open Access
Chilling
C4 photosynthesis
Miscanthus
Saccharum
Photosynthesis

SentIeon DNaSeq variant calling workflow demonstrates strong computational performance and accuracy

Kendig, K. I., Baheti, S., Bockol, M. A., Drucker, T. M., Hart, S. N., Heldenbrand, J. R., Hernaez, M., Hudson, M. E., Kalmbach, M. T., Klee, E. W., Mattson, N. R., Ross, C. A., Taschuk, M., Wieben, E. D., Wiepert, M., Wildman, D. E. & Mainzer, L. S., Jan 1 2019, In : Frontiers in Genetics. 10, JUL, 736.

Research output: Contribution to journalArticle

Open Access
Workflow
Genome
Software

Sex-specific markers for waterhemp (Amaranthus tuberculatus) and Palmer amaranth (Amaranthus palmeri)

Montgomery, J. S., Sadeque, A., Giacomini, D. A., Brown, P. J. & Tranel, P. J., Jul 1 2019, In : Weed Science. 67, 4, p. 412-418 7 p.

Research output: Contribution to journalArticle

Amaranthus tuberculatus
Amaranthus palmeri
gender
Amaranthus
dioecy

Siberian Miscanthus sacchariflorus accessions surpass the exceptional chilling tolerance of the most widely cultivated clone of Miscanthus x giganteus

Pignon, C. P., Spitz, I., Sacks, E. J., Jørgensen, U., Kørup, K. & Long, S. P., Jul 2019, In : GCB Bioenergy. 11, 7, p. 883-894 12 p.

Research output: Contribution to journalArticle

Open Access
Miscanthus sacchariflorus
Miscanthus giganteus
Chilling
cold tolerance
clone
tiles
nitrates
carbon dioxide
Root Zone Water Quality Model
hydrology

Stability analysis of kernel quality traits in exotic-derived doubled haploid maize lines

Vanous, A., Gardner, C., Blanco, M., Martin-Schwarze, A., Wang, J., Li, X., Lipka, A. E., Flint-Garcia, S., Bohn, M. O., Edwards, J. & Lubberstedt, T., Mar 2019, In : Plant Genome. 12, 1, 170114.

Research output: Contribution to journalArticle

Open Access
Haploidy
doubled haploids
Zea mays
germplasm
Corn Belt region

Survey of glyphosate-, atrazine- and lactofen-resistance mechanisms in Ohio waterhemp (Amaranthus tuberculatus) populations

Murphy, B. P., Larran, A. S., Ackley, B., Loux, M. M. & Tranel, P. J., May 1 2019, In : Weed Science. 67, 3, p. 296-302 7 p.

Research output: Contribution to journalArticle

lactofen
Amaranthus tuberculatus
atrazine
glyphosate
resistance mechanisms

Synthetic glycolate metabolism pathways stimulate crop growth and productivity in the field

South, P. F., Cavanagh, A. P., Liu, H. W. & Ort, D. R., Jan 4 2019, In : Science. 363, 6422, eaat9077.

Research output: Contribution to journalArticle

glycolic acid
Chloroplasts
Growth
Metabolic Networks and Pathways
Oxygenases

Target enrichment sequencing of 307 germplasm accessions identified ancestry of ancient and modern hybrids and signatures of adaptation and selection in sugarcane (Saccharum spp.), a ‘sweet’ crop with ‘bitter’ genomes

Yang, X., Song, J., Todd, J., Peng, Z., Paudel, D., Luo, Z., Ma, X., You, Q., Hanson, E., Zhao, Z., Zhao, Y., Zhang, J., Ming, R. R. & Wang, J., Feb 1 2019, In : Plant Biotechnology Journal. 17, 2, p. 488-498 11 p.

Research output: Contribution to journalArticle

Saccharum
sugarcane
germplasm
ancestry
Genome

Target-site mutations conferring herbicide resistance

Murphy, B. P. & Tranel, P. J., Oct 2019, In : Plants. 8, 10, 382.

Research output: Contribution to journalArticle

Open Access
herbicide resistance
herbicide
mutation
amino acid
amino acids