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The RasGEF FgCdc25 regulates fungal development and virulence in Fusarium graminearum via cAMP and MAPK signalling pathways

Chen, A., Ju, Z., Wang, J., Wang, J., Wang, H., Wu, J., Yin, Y., Zhao, Y., Ma, Z. & Chen, Y., 2020, (Accepted/In press) In : Environmental Microbiology.

Research output: Contribution to journalArticle

Therapy-, gender- and race-specific microRNA markers, target genes and networks related to glioblastoma recurrence and survival

Delfino, K. R., Serão, N. V. L., Southey, B. R. & Rodriguez-Zas, S. L., 2011, In : Cancer Genomics and Proteomics. 8, 4, p. 173-183 11 p.

Research output: Contribution to journalArticle

The proteomic complexity and rise of the primordial ancestor of diversified life

Kim, K. M. & Caetano-Anollés, G., 2011, In : BMC Evolutionary Biology. 11, 1, 140.

Research output: Contribution to journalArticle

The power and potential of genomics in weed biology and management

Ravet, K., Patterson, E. L., Krähmer, H., Hamouzová, K., Fan, L., Jasieniuk, M., Lawton-Rauh, A., Malone, J. M., McElroy, J. S., Merotto, A., Westra, P., Preston, C., Vila-Aiub, M. M., Busi, R., Tranel, P. J., Reinhardt, C., Saski, C., Beffa, R., Neve, P. & Gaines, T. A., Oct 2018, In : Pest Management Science. 74, 10, p. 2216-2225 10 p.

Research output: Contribution to journalArticle

The pomegranate (Punica granatum L.) genome and the genomics of punicalagin biosynthesis

Qin, G., Xu, C., Ming, R., Tang, H., Guyot, R., Kramer, E. M., Hu, Y., Yi, X., Qi, Y., Xu, X., Gao, Z., Pan, H., Jian, J., Tian, Y., Yue, Z. & Xu, Y., Sep 2017, In : Plant Journal. 91, 6, p. 1108-1128 21 p.

Research output: Contribution to journalArticle

The PmrAB system in Erwinia amylovora renders the pathogen more susceptible to polymyxin B and more resistant to excess iron

Nakka, S., Qi, M. & Zhao, Y., Mar 1 2010, In : Research in Microbiology. 161, 2, p. 153-157 5 p.

Research output: Contribution to journalArticle

The plastid casein kinase 2 phosphorylates rubisco activase at the Thr-78 site but is not essential for regulation of rubisco activation state

Kim, S. Y., Bender, K. W., Walker, B. J., Zielinski, R. E., Spalding, M. H., Ort, D. R. & Huber, S. C., Mar 31 2016, In : Frontiers in Plant Science. 7, MAR2016, 404.

Research output: Contribution to journalArticle

The plasma membrane as a barrier to herbicide penetration and site for adjuvant action

Wade, B. R., Riechers, D. E., Liebla, R. A. & Wax, L. M., 1993, In : Pesticide Science. 37, 2, p. 195-202 8 p.

Research output: Contribution to journalArticle

The plant structure ontology, a unified vocabulary of anatomy and morphology of a flowering plant

Ilic, K., Kellogg, E. A., Jaiswal, P., Zapata, F., Stevens, P. F., Vincent, L. P., Avraham, S., Reiser, L., Pujar, A., Sachs, M. M., Whitman, N. T., McCouch, S. R., Schaeffer, M. L., Ware, D. H., Stein, L. D. & Rhee, S. Y., Feb 2007, In : Plant physiology. 143, 2, p. 587-599 13 p.

Research output: Contribution to journalArticle

The Plant Ontology Database: A community resource for plant structure and developmental stages controlled vocabulary and annotations

Avraham, S., Tung, C. W., Ilic, K., Jaiswal, P., Kellogg, E. A., Mccouch, S., Pujar, A., Reiser, L., Rhee, S. Y., Sachs, M. M., Schaeffer, M., Stein, L., Stevens, P., Vincent, L., Zapata, F. & Ware, D., Jan 2008, In : Nucleic acids research. 36, SUPPL. 1, p. D449-D454

Research output: Contribution to journalArticle

The plant cell/microbe coincubation assay for the analysis of plant-activated promutagens

Plewa, M. J., Wagner, E. D. & Gentile, J. M., Feb 1988, In : Mutation Research - Fundamental and Molecular Mechanisms of Mutagenesis. 197, 2, p. 207-219 13 p.

Research output: Contribution to journalArticle

The plant activation of m-phenylenediamine by Tradescantia clone 03 and clone 4430 cells in liquid suspension culture

Anderson, V. A., Plewa, M. J. & Gentile, J. M., Feb 1988, In : Mutation Research - Fundamental and Molecular Mechanisms of Mutagenesis. 197, 2, p. 303-312 10 p.

Research output: Contribution to journalArticle

The pineapple genome and the evolution of CAM photosynthesis

Ming, R., VanBuren, R., Wai, C. M., Tang, H., Schatz, M. C., Bowers, J. E., Lyons, E., Wang, M. L., Chen, J., Biggers, E., Zhang, J., Huang, L., Zhang, L., Miao, W., Zhang, J., Ye, Z., Miao, C., Lin, Z., Wang, H., Zhou, H. & 50 others, Yim, W. C., Priest, H. D., Zheng, C., Woodhouse, M., Edger, P. P., Guyot, R., Guo, H. B., Guo, H., Zheng, G., Singh, R., Sharma, A., Min, X., Zheng, Y., Lee, H., Gurtowski, J., Sedlazeck, F. J., Harkess, A., McKain, M. R., Liao, Z., Fang, J., Liu, J., Zhang, X., Zhang, Q., Hu, W., Qin, Y., Wang, K., Chen, L. Y., Shirley, N., Lin, Y. R., Liu, L. Y., Hernandez, A. G., Wright, C. L., Bulone, V., Tuskan, G. A., Heath, K., Zee, F., Moore, P. H., Sunkar, R., Leebens-Mack, J. H., Mockler, T., Bennetzen, J. L., Freeling, M., Sankoff, D., Paterson, A. H., Zhu, X., Yang, X., Smith, J. A. C., Cushman, J. C., Paull, R. E. & Yu, Q., Dec 1 2015, In : Nature Genetics. 47, 12, p. 1435-1442 8 p.

Research output: Contribution to journalArticle

The phylogenomic roots of modern biochemistry: Origins of proteins, cofactors and protein biosynthesis

Caetano-Anolles, G., Kim, K. M. & Caetano-Anollés, D., Feb 2012, In : Journal of Molecular Evolution. 74, 1-2, p. 1-34 34 p.

Research output: Contribution to journalArticle

The performance of early-generation perennial winter cereals at 21 sites across four continents

Hayes, R. C., Wang, S., Newell, M. T., Turner, K., Larsen, J., Gazza, L., Anderson, J. A., Bell, L. W., Cattani, D. J., Frels, K., Galassi, E., Morgounov, A. I., Revell, C. K., Thapa, D. B., Sacks, E. J., Sameri, M., Wade, L. J., Westerbergh, A., Shamanin, V., Amanov, A. & 1 others, Li, G. D., Apr 9 2018, In : Sustainability (Switzerland). 10, 4, 1124.

Research output: Contribution to journalArticle

The papaya genome project: Fruitful insights, a decade later

Nguyen, J. K. & Ming, R., Jan 1 2019, In : Acta Horticulturae. 1250, p. 111-121 11 p.

Research output: Contribution to journalArticle

The orphan gene ybjN conveys pleiotropic effects on multicellular behavior and survival of Escherichia coli

Wang, D., Calla, B., Vimolmangkang, S., Wu, X., Korban, S. S., Huber, S. C., Clough, S. J. & Zhao, Y., Sep 27 2011, In : PloS one. 6, 9, e25293.

Research output: Contribution to journalArticle

The origin of the non-recombining region of sex chromosomes in Carica and Vasconcellea

Wu, X., Wang, J., Na, J. K., Yu, Q., Moore, R. C., Zee, F., Huber, S. C. & Ming, R., Sep 2010, In : Plant Journal. 63, 5, p. 801-810 10 p.

Research output: Contribution to journalArticle

The Origin of modern 5s rRNA: A case of relating models of structural history to phylogenetic data

Sun, F. J. & Caetano-Anolles, G., Jul 1 2010, In : Journal of Molecular Evolution. 71, 1, p. 3-5 3 p.

Research output: Contribution to journalArticle

The origin and evolution of tRNA inferred from phylogenetic analysis of structure

Sun, F. J. & Caetano-Anollés, G., Jan 1 2008, In : Journal of Molecular Evolution. 66, 1, p. 21-35 15 p.

Research output: Contribution to journalArticle

The organization of domains in proteins obeys Menzerath-Altmann's law of language

Shahzad, K., Mittenthal, J. E. & Caetano-Anollés, G., Aug 11 2015, In : BMC Systems Biology. 9, 1, 44.

Research output: Contribution to journalArticle

The nucleotide sequence of apple mosaic virus coat protein gene has no similarity with other Bromoviridae coat protein genes

Alrefai, R. H., Shiel, P. J., Domier, L. L., D'Arcy, C. J., Berger, P. H. & Korban, S. S., Jan 1 1994, In : Journal of General Virology. 75, 10, p. 2847-2850 4 p.

Research output: Contribution to journalArticle

The nonselective nature of a modified single-seed descent breeding procedure

Gourmet, C., Kolb, F. L., Brown, C. M., Smyth, C. A., Biradar, D. P. & Rayburn, A. L., Jan 1 1997, In : Crop Science. 37, 5, p. 1434-1437 4 p.

Research output: Contribution to journalArticle

The non-photochemical reduction of plastoquinone in leaves

Groom, Q. J., Kramer, D. M., Crofts, A. R. & Ort, D. R., Jun 1993, In : Photosynthesis research. 36, 3, p. 205-215 11 p.

Research output: Contribution to journalArticle

The natural history of transfer RNA and its interactions with the ribosome

Caetano-Anollés, G. & Sun, F. J., Jan 1 2014, In : Frontiers in Genetics. 5, MAY, 127.

Research output: Contribution to journalArticle

The natural history of molecular functions inferred from an extensive phylogenomic analysis of gene ontology data

Koc, I. & Caetano-Anolles, G., May 2017, In : PloS one. 12, 5, e0176129.

Research output: Contribution to journalArticle

The Natural History of Biocatalytic Mechanisms

Nath, N., Mitchell, J. B. O. & Caetano-Anollés, G., May 2014, In : PLoS computational biology. 10, 5, e1003642.

Research output: Contribution to journalArticle

The MANAGE Drain Concentration database: A new tool compiling North American drainage nutrient concentrations

Hertzberger, A., Pittelkow, C. M., Harmel, R. D. & Christianson, L. E., May 1 2019, In : Agricultural Water Management. 216, p. 113-117 5 p.

Research output: Contribution to journalArticle

Open Access

The maize O2 and PBF proteins act additively to promote transcription from storage protein gene promoters in rice endosperm cells

Hwang, Y. S., Ciceri, P., Parsons, R. L., Moose, S. P., Schmidt, R. J. & Huang, N., Oct 2004, In : Plant and Cell Physiology. 45, 10, p. 1509-1518 10 p.

Research output: Contribution to journalArticle

The Maize macrohairless1 Locus Specifically Promotes Leaf Blade Macrohair Initiation and Responds to Factors Regulating Leaf Identity

Moose, S. P., Lauter, N. & Carlson, S. R., Mar 2004, In : Genetics. 166, 3, p. 1451-1461 11 p.

Research output: Contribution to journalArticle

The maize enr system of r1 haplotype-specific aleurone color enhancement factors

Stinard, P. S., Kermicle, J. L. & Sachs, M. M., Feb 20 2009, In : Journal of Heredity. 100, 2, p. 217-228 12 p.

Research output: Contribution to journalArticle

The Kalanchoë genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism

Yang, X., Hu, R., Yin, H., Jenkins, J., Shu, S., Tang, H., Liu, D., Weighill, D. A., Cheol Yim, W., Ha, J., Heyduk, K., Goodstein, D. M., Guo, H. B., Moseley, R. C., Fitzek, E., Jawdy, S., Zhang, Z., Xie, M., Hartwell, J., Grimwood, J. & 29 others, Abraham, P. E., Mewalal, R., Beltrán, J. D., Boxall, S. F., Dever, L. V., Palla, K. J., Albion, R., Garcia, T., Mayer, J. A., Don Lim, S., Man Wai, C., Peluso, P., Van Buren, R., De Paoli, H. C., Borland, A. M., Guo, H., Chen, J. G., Muchero, W., Yin, Y., Jacobson, D. A., Tschaplinski, T. J., Hettich, R. L., Ming, R., Winter, K., Leebens-Mack, J. H., Smith, J. A. C., Cushman, J. C., Schmutz, J. & Tuskan, G. A., Dec 1 2017, In : Nature communications. 8, 1, 1899.

Research output: Contribution to journalArticle

The involvement of the photoinhibition of photosystem II and impaired membrane energization in the reduced quantum yield of carbon assimilation in chilled maize

Ortiz-Lopez, A., Nie, G. Y., Ort, D. R. & Baker, N. R., Apr 1990, In : Planta. 181, 1, p. 78-84 7 p.

Research output: Contribution to journalArticle

The interaction of the novel 30C02 cyst nematode effector protein with a plant β-1,3-endoglucanase may suppress host defence to promote parasitism

Hamamouch, N., Li, C., Hewezi, T., Baum, T. J., Mitchum, M. G., Hussey, R. S., Vodkin, L. O. & Davis, E. L., Jun 13 2012, In : Journal of experimental botany. 63, 10, p. 3683-3696 14 p.

Research output: Contribution to journalArticle

The interaction of soybean aphids and soybean cyst nematodes on selected resistant and susceptible soybean lines

Heeren, J. R., Steffey, K. L., Tinsley, N. A., Estes, R. E., Niblack, T. L. & Gray, M., Nov 1 2012, In : Journal of Applied Entomology. 136, 9, p. 646-655 10 p.

Research output: Contribution to journalArticle

The Inheritance Pattern of 24 nt siRNA Clusters in Arabidopsis Hybrids Is Influenced by Proximity to Transposable Elements

Li, Y., Varala, K., Moose, S. P. & Hudson, M. E., Oct 31 2012, In : PloS one. 7, 10, e47043.

Research output: Contribution to journalArticle

The inheritance of a branching type in soybean

Nelson, R., Jan 1 1996, In : Crop Science. 36, 5, p. 1150-1152 3 p.

Research output: Contribution to journalArticle

The influence of photosynthetic acclimation to rising CO2 and warmer temperatures on leaf and canopy photosynthesis models

Bagley, J., Rosenthal, D. M., Ruiz-Vera, U. M., Siebers, M. H., Kumar, P., Ort, D. R. & Bernacchi, C. J., Feb 2015, In : Global Biogeochemical Cycles. 29, 2, p. 194-206 13 p.

Research output: Contribution to journalArticle

The influence of drought and heat stress on long-term carbon fluxes of bioenergy crops grown in the Midwestern USA

Joo, E., Hussain, M. Z., Zeri, M., Masters, M. D., Miller, J. N., Gomez-Casanovas, N., DeLucia, E. H. & Bernacchi, C. J., Sep 1 2016, In : Plant Cell and Environment. 39, 9, p. 1928-1940 13 p.

Research output: Contribution to journalArticle

The important but weakening maize yield benefit of grain filling prolongation in the US Midwest

Zhu, P., Jin, Z., Zhuang, Q., Ciais, P., Bernacchi, C., Wang, X., Makowski, D. & Lobell, D., Oct 2018, In : Global change biology. 24, 10, p. 4718-4730 13 p.

Research output: Contribution to journalArticle

The importance of using realistic evolutionary models for retrodicting proteomes

Kim, K. M., Nasir, A. & Caetano-Anollés, G., Apr 1 2014, In : Biochimie. 99, 1, p. 129-137 9 p.

Research output: Contribution to journalArticle

The importance of space, time, and stochasticity to the demography and management of Alliaria petiolata

Evans, J. A., Davis, A. S., Raghu, S., Ragavendran, A., Landis, D. A. & Schemske, D. W., Jul 2012, In : Ecological Applications. 22, 5, p. 1497-1511 15 p.

Research output: Contribution to journalArticle

The importance of phenolic metabolism to limit the growth of Phakopsora pachyrhizi

Lygin, A. V., Li, S., Vittal, R., Widholm, J. M., Hartman, G. L. & Lozovaya, V. V., Dec 1 2009, In : Phytopathology. 99, 12, p. 1412-1420 9 p.

Research output: Contribution to journalArticle

The impacts of fluctuating light on crop performance

Slattery, R. A., Walker, B. J., Weber, A. P. M. & Ort, D. R., Feb 2018, In : Plant physiology. 176, 2, p. 990-1003 14 p.

Research output: Contribution to journalArticle

The impact of water management practices on subtropical pasture methane emissions and ecosystem service payments

Chamberlain, S. D., Groffman, P. M., Boughton, E. H., Gomez-Casanovas, N., DeLucia, E. H., Bernacchi, C. J. & Sparks, J. P., Jun 2017, In : Ecological Applications. 27, 4, p. 1199-1209 11 p.

Research output: Contribution to journalArticle

The Impact of Rye Cover Crops on Weeds, Insects, and Diseases in Snap Bean Cropping Systems

Bottenberg, H., Masiunas, J., Eastman, C. & Eastburn, D. M., Jan 11 1997, In : Journal of Sustainable Agriculture. 9, 2-3, p. 131-155 25 p.

Research output: Contribution to journalArticle

The impact of rye cover crops on weed populations in a tomato cropping system

Masiunas, J. B., Weston, L. A. & Weller, S. C., 1995, In : Weed Science. 43, 2, p. 318-323 6 p.

Research output: Contribution to journalArticle

The impact of oxygen on metabolic evolution: A chemoinformatic investigation

Jiang, Y. Y., Kong, D. X., Qin, T., Li, X., Caetano-Anollés, G. & Zhang, H. Y., Mar 2012, In : PLoS computational biology. 8, 3, e1002426.

Research output: Contribution to journalArticle