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2020

Allele specific expression of Dof genes responding to hormones and abiotic stresses in sugarcane

Cai, M., Lin, J., Li, Z., Lin, Z., Ma, Y., Wang, Y. & Ming, R., Jan 1 2020, In : PloS one. 15, 1, e0227716.

Research output: Contribution to journalArticle

Open Access

Analysis of MADS-box genes revealed modified flowering gene network and diurnal expression in pineapple

Zhang, X., Fatima, M., Zhou, P., Ma, Q. & Ming, R., Jan 2 2020, In : BMC genomics. 21, 1, 8.

Research output: Contribution to journalArticle

Open Access

Aphis glycines virus 1, a new bicistronic virus with two functional internal ribosome entry sites, is related to a group of unclassified viruses in the Picornavirales

Yasmin, T., Thekke-Veetil, T., Hobbs, H. A., Nelson, B. D., McCoppin, N. K., Lagos-Kutz, D., Hartman, G. L., Lambert, K. N., Walker, D. R. & Domier, L. L., Jan 1 2020, In : The Journal of general virology. 101, 1, p. 105-111 7 p.

Research output: Contribution to journalArticle

Diversity of metabolite accumulation patterns in inner and outer seed coats of pomegranate: exploring their relationship with genetic mechanisms of seed coat development

Qin, G., Liu, C., Li, J., Qi, Y., Gao, Z., Zhang, X., Yi, X., Pan, H., Ming, R. & Xu, Y., Dec 1 2020, In : Horticulture Research. 7, 1, 10.

Research output: Contribution to journalArticle

Estimating photosynthetic traits from reflectance spectra: A synthesis of spectral indices, numerical inversion, and partial least square regression

Fu, P., Meacham-Hensold, K., Guan, K., Wu, J. & Bernacchi, C., Jan 1 2020, (Accepted/In press) In : Plant Cell and Environment.

Research output: Contribution to journalArticle

Integrated assessment of crop production and resource use efficiency indicators for the U.S. Corn Belt

Riccetto, S., Davis, A. S., Guan, K. & Pittelkow, C. M., Mar 2020, In : Global Food Security. 24, 100339.

Research output: Contribution to journalArticle

Open Access

Lithological and bioclimatic impacts on soil phosphatase activities in California temperate forests

Gu, C., Wilson, S. G. & Margenot, A. J., Feb 2020, In : Soil Biology and Biochemistry. 141, 107633.

Research output: Contribution to journalArticle

Modeling yield response to crop management using convolutional neural networks

Barbosa, A., Trevisan, R., Hovakimyan, N. & Martin, N. F., Mar 2020, In : Computers and Electronics in Agriculture. 170, 105197.

Research output: Contribution to journalArticle

Open Access

Photosynthesis across African cassava germplasm is limited by Rubisco and mesophyll conductance at steady state, but by stomatal conductance in fluctuating light

De Souza, A. P., Wang, Y., Orr, D. J., Carmo-Silva, E. & Long, S. P., Mar 1 2020, In : New Phytologist. 225, 6, p. 2498-2512 15 p.

Research output: Contribution to journalArticle

Photosynthesis in the fleeting shadows: An overlooked opportunity for increasing crop productivity?

Wang, Y., Burgess, S. J., De Becker, E. & Long, S. P., Jan 6 2020, (Accepted/In press) In : The Plant Journal.

Research output: Contribution to journalArticle

Photosynthetic efficiency and mesophyll conductance are unaffected in Arabidopsis thaliana aquaporin knock-out lines

Kromdijk, J., Głowacka, K. & Long, S. P., Jan 1 2020, In : Journal of experimental botany. 71, 1, p. 318-329 12 p.

Research output: Contribution to journalArticle

Open Access

Plot-level rapid screening for photosynthetic parameters using proximal hyperspectral imaging

Meacham-hensold, K., Fu, P., Wu, J., Serbin, S., Montes, C. M., Ainsworth, E., Guan, K., Dracup, E., Pederson, T., Driever, S. & Bernacchi, C., Feb 24 2020, (Accepted/In press) In : Journal of experimental botany.

Research output: Contribution to journalArticle

Open Access

Rapid and distinct responses of particulate and mineral-associated organic nitrogen to conservation tillage and cover crops

Jilling, A., Kane, D., Williams, A., Yannarell, A. C., Davis, A., Jordan, N. R., Koide, R. T., Mortensen, D. A., Smith, R. G., Snapp, S. S., Spokas, K. A. & Stuart Grandy, A., Feb 1 2020, In : Geoderma. 359, 114001.

Research output: Contribution to journalArticle

Soil Microbial Communities in Diverse Agroecosystems Exposed to the Herbicide Glyphosate

Kepler, R. M., Epp Schmidt, D. J., Yarwood, S. A., Cavigelli, M. A., Reddy, K. N., Duke, S. O., Bradley, C. A., Williams, M. M., Buyer, J. S. & Maul, J. E., Feb 18 2020, In : Applied and environmental microbiology. 86, 5

Research output: Contribution to journalArticle

The genome of kenaf (Hibiscus cannabinus L.) provides insights into bast fibre and leaf shape biogenesis

Zhang, L., Xu, Y., Zhang, X., Ma, X., Zhang, L., Liao, Z., Zhang, Q., Wan, X., Cheng, Y., Zhang, J., Li, D., Zhang, L., Xu, J., Tao, A., Lin, L., Fang, P., Chen, S., Qi, R., Xu, X., Qi, J. & 1 others, Ming, R., Jan 1 2020, (Accepted/In press) In : Plant Biotechnology Journal.

Research output: Contribution to journalArticle

Open Access

The Soybean Aphid Suction Trap Network: Sampling the Aerobiological “Soup”

Lagos-Kutz, D., Voegtlin, D. J., Onstad, D., Hogg, D., Ragsdale, D., Tilmon, K., Hodgson, E., Difonzo, C., Groves, R., Krupke, C., Laforest, J., Seiter, N. J., Duerr, E., Bradford, B. & Hartman, G. L., Mar 12 2020, In : American Entomologist. 66, 1, p. 48-55

Research output: Contribution to journalArticle

Understanding variability in optimum plant density and recommendation domains for crowding stress tolerant processing sweet corn

Dhaliwal, D. S. & Williams, M. M., Jan 1 2020, In : PloS one. 15, 2, e0228809.

Research output: Contribution to journalArticle

Open Access

Variation in avenanthramide content in spring oat over multiple environments

Michels, D. K., Chatham, L. A., Butts-Wilmsmeyer, C. J., Juvik, J. A. & Kolb, F. L., Jan 2020, In : Journal of Cereal Science. 91, 102886.

Research output: Contribution to journalArticle

Open Access

Whole-genome resequencing identifies quantitative trait loci associated with mycorrhizal colonization of soybean

Pawlowski, M. L., Vuong, T. D., Valliyodan, B., Nguyen, H. T. & Hartman, G. L., Feb 1 2020, In : Theoretical and Applied Genetics. 133, 2, p. 409-417 9 p.

Research output: Contribution to journalArticle

2019

A Comparative Analysis of Anthropogenic CO2 Emissions at City Level Using OCO-2 Observations: A Global Perspective

Fu, P., Xie, Y., Moore, C. E., Myint, S. W. & Bernacchi, C. J., Sep 1 2019, In : Earth's Future. 7, 9, p. 1058-1070 13 p.

Research output: Contribution to journalArticle

Open Access

Agbots: Weeding a field with a team of autonomous robots

McAllister, W., Osipychev, D., Davis, A. & Chowdhary, G., Aug 2019, In : Computers and Electronics in Agriculture. 163, 104827.

Research output: Contribution to journalArticle

Agronomic, economic, and environmental performance of nitrogen rates and source in Bangladesh's coastal rice agroecosystems

Shah-Al-Emran, Krupnik, T. J., Kumar, V., Ali, M. Y. & Pittelkow, C. M., Sep 1 2019, In : Field Crops Research. 241, 107567.

Research output: Contribution to journalArticle

Open Access

Aligning Product Chemistry and Soil Context for Agronomic Reuse of Human-Derived Resources

Trimmer, J. T., Margenot, A. J., Cusick, R. & Guest, J. S., Jun 4 2019, In : Environmental Science and Technology. 53, 11, p. 6501-6510 10 p.

Research output: Contribution to journalArticle

Amino acid differences in the N-terminal half of the polyprotein of Chinese turnip mosaic virus isolates affect symptom expression in Nicotiana benthamiana and radish

Hu, W. X., Seo, E. Y., Cho, I. S., Kim, J. K., Ju, H. K., Kim, I. H., Choi, G. W., Kim, B., Ahn, C. H., Domier, L. L., Oh, S. K., Hammond, J. & Lim, H. S., Jun 1 2019, In : Archives of Virology. 164, 6, p. 1683-1689 7 p.

Research output: Contribution to journalArticle

Ammonia flux measurements above a corn canopy using relaxed eddy accumulation and a flux gradient system

Nelson, A. J., Lichiheb, N., Koloutsou-Vakakis, S., Rood, M. J., Heuer, M., Myles, L. T., Joo, E., Miller, J. & Bernacchi, C., Jan 15 2019, In : Agricultural and Forest Meteorology. 264, p. 104-113 10 p.

Research output: Contribution to journalArticle

Antagonism of Trichoderma-based biofungicides against Brazilian and North American isolates of Sclerotinia sclerotiorum and growth promotion of soybean

Macena, A. M. F., Kobori, N. N., Mascarin, G. M., Vida, J. B. & Hartman, G. L., Jan 1 2019, (Accepted/In press) In : BioControl.

Research output: Contribution to journalArticle

A physical model-based method for retrieving urban land surface temperatures under cloudy conditions

Fu, P., Xie, Y., Weng, Q., Myint, S., Meacham-Hensold, K. & Bernacchi, C., Sep 1 2019, In : Remote Sensing of Environment. 230, 111191.

Research output: Contribution to journalArticle

Are we approaching a water ceiling to maize yields in the United States?

Delucia, E. H., Chen, S., Guan, K., Peng, B., Li, Y., Gomez-Casanovas, N., Kantola, I. B., Bernacchi, C., Huang, Y., Long, S. P. & Ort, D. R., Jun 18 2019, In : Ecosphere. 10, 6, e02773.

Research output: Contribution to journalArticle

A single nucleotide change in the overlapping MP and CP reading frames results in differences in symptoms caused by two isolates of Youcai mosaic virus

Ju, H. K., Kim, I. H., Hu, W. X., Kim, B., Choi, G. W., Kim, J., Lim, Y. P., Domier, L. L., Hammond, J. & Lim, H. S., Jan 1 2019, In : Archives of Virology.

Research output: Contribution to journalArticle

Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world's leading biomass crop

Souza, G. M., Van Sluys, M. A., Lembke, C. G., Lee, H., Margarido, G. R. A., Hotta, C. T., Gaiarsa, J. W., Diniz, A. L., Oliveira, M. D. M., Ferreira, S. D. S., Nishiyama, M. Y., Ten-Caten, F., Ragagnin, G. T., Andrade, P. D. M., De Souza, R. F., Nicastro, G. G., Pandya, R., Kim, C., Guo, H., Durham, A. M. & 9 others, Carneiro, M. S., Zhang, J., Zhang, X., Zhang, Q., Ming, R., Schatz, M. C., Davidson, B., Paterson, A. H. & Heckerman, D., Dec 6 2019, In : GigaScience. 8, 12, giz129.

Research output: Contribution to journalArticle

Open Access

Assessing safe food handling knowledge and practices of food service managers in Doha, Qatar

Asim, H. S., Elnemr, I., Goktepe, I., Feng, H., Park, H. K., Alzeyara, S., AlHajri, M. & Kushad, M. M., Jul 1 2019, In : Food Science and Technology International. 25, 5, p. 440-448 9 p.

Research output: Contribution to journalArticle

Assessing variation in us soybean seed composition (protein and oil)

Assefa, Y., Purcell, L. C., Salmeron, M., Naeve, S., Casteel, S. N., Kovács, P., Archontoulis, S., Licht, M., Below, F., Kandel, H., Lindsey, L. E., Gaska, J., Conley, S., Shapiro, C., Orlowski, J. M., Golden, B. R., Kaur, G., Singh, M., Thelen, K., Laurenz, R. & 2 others, Davidson, D. & Ciampitti, I. A., Mar 11 2019, In : Frontiers in Plant Science. 10, 298.

Research output: Contribution to journalArticle

Open Access

A turnip mosaic virus determinant of systemic necrosis in nicotiana benthamiana and a novel resistance-breaking determinant in Chinese cabbage identified from chimeric infectious clones

Kim, I. H., Ju, H. K., Gong, J., Han, J. Y., Seo, E. Y., Cho, S. W., Hu, W. X., Choi, S. R., Lim, Y. P., Domier, L. L., Hammond, J. & Lim, H. S., Jan 1 2019, In : Phytopathology. 109, 9, p. 1638-1647 10 p.

Research output: Contribution to journalArticle

Auxin regulation involved in gynoecium morphogenesis of papaya flowers

Zhou, P., Fatima, M., Ma, X., Liu, J. & Ming, R., Dec 1 2019, In : Horticulture Research. 6, 1, 119.

Research output: Contribution to journalArticle

Open Access

Biomass yield in a genetically diverse Miscanthus sinensis germplasm panel evaluated at five locations revealed individuals with exceptional potential

Clark, L. V., Dwiyanti, M. S., Anzoua, K. G., Brummer, J. E., Ghimire, B. K., Głowacka, K., Hall, M., Heo, K., Jin, X., Lipka, A. E., Peng, J., Yamada, T., Yoo, J. H., Yu, C. Y., Zhao, H., Long, S. P. & Sacks, E. J., Oct 1 2019, In : GCB Bioenergy. 11, 10, p. 1125-1145 21 p.

Research output: Contribution to journalArticle

Breeding progress and preparedness for mass-scale deployment of perennial lignocellulosic biomass crops switchgrass, miscanthus, willow and poplar

Clifton-Brown, J., Harfouche, A., Casler, M. D., Dylan Jones, H., Macalpine, W. J., Murphy-Bokern, D., Smart, L. B., Adler, A., Ashman, C., Awty-Carroll, D., Bastien, C., Bopper, S., Botnari, V., Brancourt-Hulmel, M., Chen, Z., Clark, L. V., Cosentino, S., Dalton, S., Davey, C., Dolstra, O. & 39 others, Donnison, I., Flavell, R., Greef, J., Hanley, S., Hastings, A., Hertzberg, M., Hsu, T. W., Huang, L. S., Iurato, A., Jensen, E., Jin, X., Jørgensen, U., Kiesel, A., Kim, D. S., Liu, J., McCalmont, J. P., McMahon, B. G., Mos, M., Robson, P., Sacks, E. J., Sandu, A., Scalici, G., Schwarz, K., Scordia, D., Shafiei, R., Shield, I., Slavov, G., Stanton, B. J., Swaminathan, K., Taylor, G., Torres, A. F., Trindade, L. M., Tschaplinski, T., Tuskan, G. A., Yamada, T., Yeon Yu, C., Zalesny, R. S., Zong, J. & Lewandowski, I., Jan 2019, In : GCB Bioenergy. 11, 1, p. 118-151 34 p.

Research output: Contribution to journalArticle

BSD2 is a Rubisco-specific assembly chaperone, forms intermediary hetero-oligomeric complexes, and is nonlimiting to growth in tobacco

Conlan, B., Birch, R., Kelso, C., Holland, S., De Souza, A. P., Long, S. P., Beck, J. L. & Whitney, S. M., Apr 2019, In : Plant Cell and Environment. 42, 4, p. 1287-1301 15 p.

Research output: Contribution to journalArticle

Bundle sheath chloroplast volume can house sufficient Rubisco to avoid limiting C4 photosynthesis during chilling

Pignon, C. P., Lundgren, M. R., Osborne, C. P. & Long, S. P., Jan 1 2019, In : Journal of experimental botany. 70, 1, p. 357-365 9 p.

Research output: Contribution to journalArticle