Research Output 1971 2019

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2019

A Comparative Analysis of Anthropogenic CO2 Emissions at City Level Using OCO-2 Observations: A Global Perspective

Fu, P., Xie, Y., Moore, C. E., Myint, S. W. & Bernacchi, C., Sep 1 2019, In : Earth's Future. 7, 9, p. 1058-1070 13 p.

Research output: Contribution to journalArticle

Open Access
global perspective
fossil fuel
seasonality
vegetation
carbon
glucokinase
Glucokinase
Anthocyanins
Medical problems
phenolic acids

Agbots: Weeding a field with a team of autonomous robots

McAllister, W., Osipychev, D., Davis, A. & Chowdhary, G., Aug 2019, In : Computers and Electronics in Agriculture. 163, 104827.

Research output: Contribution to journalArticle

Open Access
robots
weed
weed control
seed bank
Robots

Agronomic, economic, and environmental performance of nitrogen rates and source in Bangladesh's coastal rice agroecosystems

Shah-Al-Emran, Krupnik, T. J., Kumar, V., Ali, M. Y. & Pittelkow, C. M., Sep 1 2019, In : Field Crops Research. 241, 107567.

Research output: Contribution to journalArticle

Open Access
economic performance
agricultural ecosystem
Bangladesh
agroecosystems
agronomic traits

Aligning Product Chemistry and Soil Context for Agronomic Reuse of Human-Derived Resources

Trimmer, J. T., Margenot, A. J., Cusick, R. & Guest, J. S., Jun 4 2019, In : Environmental Science and Technology. 53, 11, p. 6501-6510 10 p.

Research output: Contribution to journalArticle

Soils
Sanitation
Nutrients
struvite
sanitation

Amino acid differences in the N-terminal half of the polyprotein of Chinese turnip mosaic virus isolates affect symptom expression in Nicotiana benthamiana and radish

Hu, W. X., Seo, E. Y., Cho, I. S., Kim, J. K., Ju, H. K., Kim, I. H., Choi, G. W., Kim, B., Ahn, C. H., Domier, L. L., Oh, S. K., Hammond, J. & Lim, H. S., Jun 1 2019, In : Archives of Virology. 164, 6, p. 1683-1689 7 p.

Research output: Contribution to journalArticle

Raphanus
Mosaic Viruses
Polyproteins
Brassica napus
Tobacco

Ammonia flux measurements above a corn canopy using relaxed eddy accumulation and a flux gradient system

Nelson, A. J., Lichiheb, N., Koloutsou-Vakakis, S., Rood, M. J., Heuer, M., Myles, L. T., Joo, E., Miller, J. & Bernacchi, C., Jan 15 2019, In : Agricultural and Forest Meteorology. 264, p. 104-113 10 p.

Research output: Contribution to journalArticle

flux measurement
eddy
ammonia
maize
canopy

Analysis of genetic diversity of lychee (Litchi chinensis Sonn.) and wild forest relatives in the Sapindaceae from Vietnam using microsatellites

Tran, H., Kanzaki, S., Triest, L., Hormaza, I., Kuk, N. J., Ming, R., Bousquet, J., Khasa, D. & Van Damme, P., Dec 1 2019, In : Genetic Resources and Crop Evolution. 66, 8, p. 1653-1669 17 p.

Research output: Contribution to journalArticle

Sapindaceae
Litchi
Litchi chinensis
Vietnam
Microsatellite Repeats

An assessment of true and false positive detection rates of stepwise epistatic model selection as a function of sample size and number of markers

Chen, A. H., Ge, W., Metcalf, W., Jakobsson, E., Mainzer, L. S. & Lipka, A. E., May 1 2019, In : Heredity. 122, 5, p. 660-671 12 p.

Research output: Contribution to journalArticle

Sample Size
Gene Frequency
Zea mays
Nucleotides
Genome

A physical model-based method for retrieving urban land surface temperatures under cloudy conditions

Fu, P., Xie, Y., Weng, Q., Myint, S., Meacham-Hensold, K. & Bernacchi, C., Sep 1 2019, In : Remote Sensing of Environment. 230, 111191.

Research output: Contribution to journalArticle

physical models
surface temperature
land surface
Mean square error
Temperature

Are we approaching a water ceiling to maize yields in the United States?

Delucia, E. H., Chen, S., Guan, K., Peng, B., Li, Y., Gomez-Casanovas, N., Kantola, I. B., Bernacchi, C., Huang, Y., Long, S. P. & Ort, D. R., Jun 18 2019, In : Ecosphere. 10, 6, e02773.

Research output: Contribution to journalArticle

Open Access
maize
corn
vapor pressure
water
water use efficiency

A single nucleotide change in the overlapping MP and CP reading frames results in differences in symptoms caused by two isolates of Youcai mosaic virus

Ju, H. K., Kim, I. H., Hu, W. X., Kim, B., Choi, G. W., Kim, J., Lim, Y. P., Domier, L. L., Hammond, J. & Lim, H. S., Jan 1 2019, In : Archives of Virology.

Research output: Contribution to journalArticle

Mosaic Viruses
Reading Frames
Capsid Proteins
Nucleotides
Proteins

Assembly of allele-aware, chromosomal-scale autopolyploid genomes based on Hi-C data

Zhang, X., Zhang, S., Zhao, Q., Ming, R. R. & Tang, H., Aug 1 2019, In : Nature Plants. 5, 8, p. 833-845 13 p.

Research output: Contribution to journalArticle

autopolyploidy
alleles
genome
chromosomes
diploidy

Assessing safe food handling knowledge and practices of food service managers in Doha, Qatar

Asim, H. S., Elnemr, I., Goktepe, I., Feng, H., Park, H. K., Alzeyara, S., AlHajri, M. & Kushad, M. M., Jul 1 2019, In : Food Science and Technology International. 25, 5, p. 440-448 9 p.

Research output: Contribution to journalArticle

Qatar
Food Services
food handling
Food Handling
food service

Assessing variation in maize grain nitrogen concentration and its implications for estimating nitrogen balance in the US North Central region

Tenorio, F. A. M., Eagle, A. J., McLellan, E. L., Cassman, K. G., Howard, R., Below, F. E., Clay, D. E., Coulter, J. A., Geyer, A. B., Joos, D. K., Lauer, J. G., Licht, M. A., Lindsey, A. J., Maharjan, B., Pittelkow, C. M., Thomison, P. R., Wortmann, C. S., Sadras, V. O. & Grassini, P., Jul 1 2019, In : Field Crops Research. 240, p. 185-193 9 p.

Research output: Contribution to journalArticle

nitrogen balance
maize
corn
nitrogen
removal

Assessing variation in us soybean seed composition (protein and oil)

Assefa, Y., Purcell, L. C., Salmeron, M., Naeve, S., Casteel, S. N., Kovács, P., Archontoulis, S., Licht, M., Below, F. E., Kandel, H., Lindsey, L. E., Gaska, J., Conley, S., Shapiro, C., Orlowski, J. M., Golden, B. R., Kaur, G., Singh, M., Thelen, K., Laurenz, R. & 2 others, Davidson, D. & Ciampitti, I. A., Mar 11 2019, In : Frontiers in Plant Science. 10, 298.

Research output: Contribution to journalArticle

Open Access
protein composition
soybeans
oils
seeds
seed yield

A turnip mosaic virus determinant of systemic necrosis in nicotiana benthamiana and a novel resistance-breaking determinant in Chinese cabbage identified from chimeric infectious clones

Kim, I. H., Ju, H. K., Gong, J., Han, J. Y., Seo, E. Y., Cho, S. W., Hu, W. X., Choi, S. R., Lim, Y. P., Domier, L. L., Hammond, J. & Lim, H. S., Jan 1 2019, In : Phytopathology. 109, 9, p. 1638-1647 10 p.

Research output: Contribution to journalArticle

Turnip mosaic virus
Chinese cabbage
Nicotiana benthamiana
chimerism
necrosis

Biomass yield in a genetically diverse Miscanthus sinensis germplasm panel evaluated at five locations revealed individuals with exceptional potential

Clark, L. V., Dwiyanti, M. S., Anzoua, K. G., Brummer, J. E., Ghimire, B. K., Głowacka, K., Hall, M., Heo, K., Jin, X., Lipka, A. E., Peng, J., Yamada, T., Yoo, J. H., Yu, C. Y., Zhao, H., Long, S. P. & Sacks, E. J., Oct 1 2019, In : GCB Bioenergy. 11, 10, p. 1125-1145 21 p.

Research output: Contribution to journalArticle

Open Access
Miscanthus giganteus
Miscanthus sinensis
germplasm
Biomass
biomass

Boron and zinc deficiencies and toxicities and their interactions with other nutrients in soybean roots, leaves, and seeds

Pawlowski, M. L., Helfenstein, J., Frossard, E. & Hartman, G. L., Apr 3 2019, In : Journal of Plant Nutrition. 42, 6, p. 634-649 16 p.

Research output: Contribution to journalArticle

Boron
Cotyledon
boron
Soybeans
Zinc

Breeding progress and preparedness for mass-scale deployment of perennial lignocellulosic biomass crops switchgrass, miscanthus, willow and poplar

Clifton-Brown, J., Harfouche, A., Casler, M. D., Dylan Jones, H., Macalpine, W. J., Murphy-Bokern, D., Smart, L. B., Adler, A., Ashman, C., Awty-Carroll, D., Bastien, C., Bopper, S., Botnari, V., Brancourt-Hulmel, M., Chen, Z., Clark, L. V., Cosentino, S., Dalton, S., Davey, C., Dolstra, O. & 39 others, Donnison, I., Flavell, R., Greef, J., Hanley, S., Hastings, A., Hertzberg, M., Hsu, T. W., Huang, L. S., Iurato, A., Jensen, E., Jin, X., Jørgensen, U., Kiesel, A., Kim, D. S., Liu, J., McCalmont, J. P., McMahon, B. G., Mos, M., Robson, P., Sacks, E. J., Sandu, A., Scalici, G., Schwarz, K., Scordia, D., Shafiei, R., Shield, I., Slavov, G., Stanton, B. J., Swaminathan, K., Taylor, G., Torres, A. F., Trindade, L. M., Tschaplinski, T., Tuskan, G. A., Yamada, T., Yeon Yu, C., Zalesny, R. S., Zong, J. & Lewandowski, I., Jan 2019, In : GCB Bioenergy. 11, 1, p. 118-151 34 p.

Research output: Contribution to journalArticle

Miscanthus
Panicum virgatum
energy crops
Crops
Biomass

BSD2 is a Rubisco-specific assembly chaperone, forms intermediary hetero-oligomeric complexes, and is nonlimiting to growth in tobacco

Conlan, B., Birch, R., Kelso, C., Holland, S., De Souza, A. P., Long, S. P., Beck, J. L. & Whitney, S. M., Apr 2019, In : Plant Cell and Environment. 42, 4, p. 1287-1301 15 p.

Research output: Contribution to journalArticle

Ribulose-Bisphosphate Carboxylase
ribulose-bisphosphate carboxylase
Tobacco
tobacco
Growth
conservation programs
landowners
agroforestry
Federal Government
Retirement

Bundle sheath chloroplast volume can house sufficient Rubisco to avoid limiting C4 photosynthesis during chilling

Pignon, C. P., Lundgren, M. R., Osborne, C. P. & Long, S. P., Jan 1 2019, In : Journal of experimental botany. 70, 1, p. 357-365 9 p.

Research output: Contribution to journalArticle

Ribulose-Bisphosphate Carboxylase
C4 photosynthesis
Photosynthesis
ribulose-bisphosphate carboxylase
Chloroplasts

Carfentrazone-ethyl resistance in an Amaranthus tuberculatus population is not mediated by amino acid alterations in the PPO2 protein

Obenland, O. A., Ma, R., O’Brien, S. R., Lygin, A. V. & Riechers, D. E., Apr 2019, In : PloS one. 14, 4, e0215431.

Research output: Contribution to journalArticle

Open Access
carfentrazone
Amaranthus tuberculatus
Amaranthus
Protoporphyrinogen Oxidase
protoporphyrinogen oxidase
Amaranthus tuberculatus
protoporphyrinogen oxidase
herbicides
acetolactate synthase
2,4-D

Characterization of multiple herbicide-resistant waterhemp (Amaranthus tuberculatus) populations from Illinois to VLCFA-inhibiting herbicides

Strom, S. A., Gonzini, L. C., Mitsdarfer, C., Davis, A., Riechers, D. E. & Hager, A. G., Jul 1 2019, In : Weed Science. 67, 4, p. 369-379 11 p.

Research output: Contribution to journalArticle

Amaranthus tuberculatus
acetochlor
very long chain fatty acids
metolachlor
pyroxasulfone

Characterization of soybean STAY-GREEN genes in susceptibility to foliar chlorosis of sudden death syndrome

Chang, H. X., Tan, R., Hartman, G. L., Wen, Z., Sang, H., Domier, L. L., Whitham, S. A., Wang, D. & Chilvers, M. I., Jun 2019, In : Plant physiology. 180, 2, p. 711-717 7 p.

Research output: Contribution to journalArticle

Open Access
Hypochromic Anemia
chlorosis
Sudden Death
Soybeans
soybeans

Coevolution of resistance to PPO inhibitors in waterhemp (Amaranthus tuberculatus) and Palmer amaranth (Amaranthus palmeri)

Lillie, K. J., Giacomini, D. A., Green, J. D. & Tranel, P. J., Sep 1 2019, In : Weed Science. 67, 5, p. 521-526 6 p.

Research output: Contribution to journalArticle

Amaranthus tuberculatus
Amaranthus palmeri
protoporphyrinogen oxidase
coevolution
glycine (amino acid)

Comparative Analysis of SUS Gene Family between Saccharum officinarum and Saccharum spontaneum

Shi, Y., Xu, H., Shen, Q., Lin, J., Wang, Y., Hua, X., Yao, W., Yu, Q., Ming, R. R. & Zhang, J., Sep 1 2019, In : Tropical Plant Biology. 12, 3, p. 174-185 12 p.

Research output: Contribution to journalArticle

Saccharum spontaneum
Saccharum
Saccharum officinarum
sucrose synthase
Genes

Comparative genomics revealed the gene evolution and functional divergence of magnesium transporter families in Saccharum

Wang, Y., Hua, X., Xu, J., Chen, Z., Fan, T., Zeng, Z., Wang, H., Hour, A. L., Yu, Q., Ming, R. R. & Zhang, J., Jan 24 2019, In : BMC genomics. 20, 1, 5437.

Research output: Contribution to journalArticle

Saccharum
Genomics
Magnesium
Genes
Mya

Convergent evolution of saccate body shapes in nematodes through distinct developmental mechanisms

Thapa, S., Gates, M. K., Reuter-Carlson, U., Androwski, R. J. & Schroeder, N. E., Mar 14 2019, In : EvoDevo. 10, 1, 21 p., 5.

Research output: Contribution to journalArticle

Open Access
animal morphology
convergent evolution
Heterodera glycines
body shape
Glycine

Cover crop rotations affect greenhouse gas emissions and crop production in Illinois, USA

Behnke, G. D. & Villamil, M. B., Sep 1 2019, In : Field Crops Research. 241, 107580.

Research output: Contribution to journalArticle

cover crop
crop rotation
greenhouse gas emissions
cover crops
crop production

Deleterious mutation burden and its association with complex traits in sorghum (Sorghum bicolor)

Valluru, R., Gazave, E. E., Fernandes, S. B., Ferguson, J. N., Lozano, R., Hirannaiah, P., Zuo, T., Brown, P. J., Leakey, A., Gore, M. A., Buckler, E. S. & Bandillo, N., Mar 2019, In : Genetics. 211, 3, p. 1075-1087 13 p.

Research output: Contribution to journalArticle

Sorghum
Mutation
Biomass
Genome
Starch

Designing multifunctional woody polycultures according to landowner preferences in Central Illinois

Stanek, E. C., Lovell, S. T. & Reisner, A. E., Jan 1 2019, (Accepted/In press) In : Agroforestry Systems.

Research output: Contribution to journalArticle

polyculture
landowners
landowner
nut
crop

Developing and validating a decision support tool for media selection to mitigate drainage waters

Ezzati, G., Healy, M. G., Christianson, L. E., Feyereisen, G. W., Thornton, S., Daly, K. & Fenton, O., Aug 2019, In : Ecological Engineering: X. 2, 100010.

Research output: Contribution to journalArticle

Open Access
drainage water
Nutrients
Drainage
nutrient
hydraulic conductivity

Development of Economic Thresholds for Sugarcane Aphid (Hemiptera: Aphididae) in Susceptible Grain Sorghum Hybrids

Gordy, J. W., Brewer, M. J., Bowling, R. D., Buntin, G. D., Seiter, N. J., Kerns, D. L., Reay-Jones, F. P. F. & Way, M. O., May 22 2019, In : Journal of economic entomology. 112, 3, p. 1251-1259 9 p.

Research output: Contribution to journalArticle

Melanaphis sacchari
economic threshold
grain sorghum
sorghum
Aphididae

Diatraea saccharalis history of colonization in the Americas. The case for human-mediated dispersal

Francischini, F. J. B., Cordeiro, E. M. G., de Campos, J. B., Alves-Pereira, A., Gomes Viana, J. P., Wu, X., Wei, W., Brown, P., Joyce, A., Murua, G., Fogliata, S., Clough, S. J. & Zucchi, M. I., Jan 1 2019, In : PloS one. 14, 7, e0220031.

Research output: Contribution to journalArticle

Open Access
Diatraea saccharalis
History
Saccharum
Genetic Structures
Genes

Dissecting the nonlinear response of maize yield to high temperature stress with model-data integration

Zhu, P., Zhuang, Q., Archontoulis, S. V., Bernacchi, C. & Müller, C., Jul 2019, In : Global change biology. 25, 7, p. 2470-2484 15 p.

Research output: Contribution to journalArticle

Data integration
maize
Crops
crop
Temperature

Diversification and labor productivity on US permaculture farms

Ferguson, R. S. & Lovell, S. T., Aug 1 2019, In : Renewable Agriculture and Food Systems. 34, 4, p. 326-337 12 p.

Research output: Contribution to journalArticle

permaculture
labor productivity
Agriculture
farms
farming systems

Drying-rewetting cycles affect nitrate removal rates in woodchip bioreactors

Maxwell, B. M., Birgand, F., Schipper, L. A., Christianson, L. E., Tian, S., Helmers, M. J., Williams, D. J., Chescheir, G. M. & Youssef, M. A., Jan 1 2019, In : Journal of Environmental Quality. 48, 1, p. 93-101 9 p.

Research output: Contribution to journalArticle

rewetting
Bioreactors
bioreactor
Nitrates
Drying
Tetrapyrroles
Aminolevulinic Acid
aminolevulinic acid
Labeling
synthesis
Open Access
Panicum virgatum
bioenergy
ozone
nutrient content
feedstocks

Empirical investigation of mutation rate for herbicide resistance

Casale, F. A., Giacomini, D. A. & Tranel, P. J., Jul 1 2019, In : Weed Science. 67, 4, p. 361-368 8 p.

Research output: Contribution to journalArticle

herbicide resistance
herbicides
mutation
mutants
acetolactate synthase

Epidermal remodeling in Caenorhabditis elegans dauers requires the nidogen domain protein DEX-1

Flatt, K. M., Beshers, C., Unal, C., Cohen, J. D., Sundaram, M. V. & Schroeder, N. E., Jan 2019, In : Genetics. 211, 1, p. 169-183 15 p.

Research output: Contribution to journalArticle

Caenorhabditis elegans
Zona Pellucida
Dendrites
Morphogenesis
Epidermis

Epithelial shaping by diverse apical extracellular matrices requires the nidogen domain protein DEX-1 in Caenorhabditis elegans

Cohen, J. D., Flatt, K. M., Schroeder, N. E. & Sundaram, M. V., Jan 2019, In : Genetics. 211, 1, p. 185-200 16 p.

Research output: Contribution to journalArticle

Zona Pellucida
Caenorhabditis elegans
Extracellular Matrix
Epithelium
Proteins

Estimation of realized rates of genetic gain and indicators for breeding program assessment

Rutkoski, J., May 1 2019, In : Crop Science. 59, 3, p. 981-993 13 p.

Research output: Contribution to journalArticle

Open Access
genetic improvement
breeding
breeding value
methodology
plant breeding

Evaluation of cover crop sensitivity to residual herbicides applied in the previous soybean [Glycine max (L.) Merr] crop

Whalen, D. M., Bish, M. D., Young, B. G., Hager, A. G., Conley, S. P., Reynolds, D. B., Steckel, L. E., Norsworthy, J. K. & Bradley, K. W., Apr 1 2019, In : Weed Technology. 33, 2, p. 312-320 9 p.

Research output: Contribution to journalArticle

fomesafen
metolachlor
cover crops
Glycine max
herbicides
Open Access
Sorghum
Genome-Wide Association Study
Sorghum (Poaceae)
marker-assisted selection
Zea mays

Evolution and Expression Analysis of Starch Synthase Gene Families in Saccharum spontaneum

Ma, P., Yuan, Y., Shen, Q., Jiang, Q., Hua, X., Zhang, Q., Zhang, M., Ming, R. R. & Zhang, J., Sep 1 2019, In : Tropical Plant Biology. 12, 3, p. 158-173 16 p.

Research output: Contribution to journalArticle

Starch Synthase
Saccharum spontaneum
Saccharum
starch synthase
Genes

Exploring the differential mechanisms of carotenoid biosynthesis in the yellow peel and red flesh of papaya

Shen, Y. H., Yang, F. Y., Lu, B. G., Zhao, W. W., Jiang, T., Feng, L., Chen, X. J. & Ming, R. R., Jan 16 2019, In : BMC genomics. 20, 1, 49.

Research output: Contribution to journalArticle

Carica
Carotenoids
Biosynthetic Pathways
Fruit
Lutein