Research Output

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2019

A practical guide to genetic gain

Rutkoski, J. E., 2019, Advances in Agronomy. Sparks, D. L. (ed.). Academic Press Inc., p. 217-249 33 p. (Advances in Agronomy; vol. 157).

Research output: Chapter in Book/Report/Conference proceedingChapter

Colonization of seeds by soilborne fungi: Linking seed dormancy-defense syndromes, evolutionary constraints, and fungal traits

Stump, S. M., Sarmiento, C., Zalamea, P. C., Dalling, J. W., Davis, A. S., Shaffer, J. P. & Arnold, A. E., Apr 5 2019, Seed Endophytes: Biology and Biotechnology. Springer International Publishing, p. 465-481 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2018

Bioinformatics for prohormone and neuropeptide discovery

Southey, B. R., Romanova, E. V., Rodriguez-Zas, S. L. & Sweedler, J. V., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 71-96 26 p. (Methods in Molecular Biology; vol. 1719).

Research output: Chapter in Book/Report/Conference proceedingChapter

Use of in vitro kernel culture to study maize nitrogen and carbohydrate metabolism

Seebauer, J. R. & Below, F. E., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 3-13 11 p. (Methods in Molecular Biology; vol. 1676).

Research output: Chapter in Book/Report/Conference proceedingChapter

2017

Applications of genomics in weed science

Gaines, T. A., Tranel, P. J., Fleming, M. B., Patterson, E. L., Küpper, A., Ravet, K., Giacomini, D. A., Gonzalez, S. & Beffa, R., Jan 1 2017, Biology, Physiology and Molecular Biology of Weeds. Jugulam, M. (ed.). CRC Press, p. 185-218 34 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Chapter 3: Microplate-based Comet Assay

Wagner, E. D. & Plewa, M. J., Jan 1 2017, The Comet Assay in Toxicology, 2nd Edition. Anderson, D. & Dhawan, A. (eds.). 30 ed. Royal Society of Chemistry, p. 93-111 19 p. (Issues in Toxicology; vol. 2017-January, no. 30).

Research output: Chapter in Book/Report/Conference proceedingChapter

Chapter 4: The Use of Higher Plants in the Comet Assay

Gichner, T., Znidar, I., Wagner, E. D. & Plewa, M. J., Jan 1 2017, The Comet Assay in Toxicology, 2nd Edition. Anderson, D. & Dhawan, A. (eds.). 30 ed. Royal Society of Chemistry, p. 112-133 22 p. (Issues in Toxicology; vol. 2017-January, no. 30).

Research output: Chapter in Book/Report/Conference proceedingChapter

Crop selectivity and herbicide safeners: Historical perspectives and development, safener-regulated gene expression, signaling, and new research directions

Riechers, D. E. & Green, J. M., Jan 1 2017, Biology, Physiology and Molecular Biology of Weeds. Jugulam, M. (ed.). CRC Press, p. 123-143 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Non-Chemical Weed Management

Melander, B., Liebman, M., Davis, A. S., Gallandt, E. R., Bàrberi, P., Moonen, A. C., Rasmussen, J., van der Weide, R. & Vidotto, F., Jun 29 2017, Weed Research: Expanding Horizons. Wiley, p. 245-270 26 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

The compressed vocabulary of the proteins of archaea

Caetano-Anollés, G., Minhas, B. F., Aziz, F., Mughal, F., Shahzad, K., Tal, G., Mittenthal, J. E., Caetano-Anollés, D., Koç, I., Nasir, A., Caetano-Anollés, K. & Kim, K. M., Sep 27 2017, Biocommunication of Archaea. Springer International Publishing, p. 147-174 28 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2016

Molecular breeding

Walker, D. R., Monteros, M. J. & Yates, J. L., Apr 19 2016, Genetics, Genomics, and Breeding of Soybean. CRC Press, p. 123-168 46 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Oomycete diseases of cucurbits: History, significance, and management

Babadoost, M., Jan 1 2016, Horticultural Reviews. John Wiley and Sons Inc., p. 279-314 36 p. (Horticultural Reviews; vol. 44).

Research output: Chapter in Book/Report/Conference proceedingChapter

Successful Technologies and Approaches Used to Develop and Manage Resistance Against Crop Diseases and Pests

Hartman, G. L., Pawlowski, M. L., Chang, H. X. & Hill, C. B., Jan 1 2016, Emerging Technologies for Promoting Food Security: Overcoming the World Food Crisis. Elsevier Inc., p. 43-66 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

The phylogenomic roots of translation

Caetano-Anollés, D. & Caetano-Anollés, G., Jan 1 2016, Evolution of the Protein Synthesis Machinery and Its Regulation. Springer International Publishing, p. 9-30 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Transcriptomic profiling of central nervous system regions in three species of honey bee during dance communication behavior

Sarma, M. S., Rodriguez-Zas, S. L., Hong, F., Zhong, S. & Robinson, G. E., Apr 19 2016, Animal Behavior: An Evolutionary Approach. Apple Academic Press, p. 210-230 21 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2015

Analysis, occurrence, and toxicity of haloacetaldehydes in drinking waters: Iodoacetaldehyde as an emerging disinfection by-product

Postigo, C., Jeong, C. H., Richardson, S. D., Wagner, E. D., Plewa, M. J., Simmons, J. E. & Barcelo, D., Jan 1 2015, Recent Advances in Disinfection By-Products. Xie, Y., Mitch, B., Karanfil, T. & Westerhoff, P. (eds.). American Chemical Society, p. 25-43 19 p. (ACS Symposium Series; vol. 1190).

Research output: Chapter in Book/Report/Conference proceedingChapter

Charting a new path to resolve the adverse health effects of DBPs

Plewa, M. J. & Wagner, E. D., Jan 1 2015, Recent Advances in Disinfection By-Products. Xie, Y., Mitch, B., Karanfil, T. & Westerhoff, P. (eds.). American Chemical Society, p. 3-23 21 p. (ACS Symposium Series; vol. 1190).

Research output: Chapter in Book/Report/Conference proceedingChapter

NC-140 peach rootstock testing in thirteen U.S. states

Reighard, G., Bridges, W., Archbold, D., Wolfe, D., Atucha, A., Pokharel, R., Autio, W., Beckman, T., Black, B., Lindstrom, T., Coneva, E., Day, K., Johnson, R. S., Kushad, M., Parker, M., Robinson, T., Schupp, J. & Warmund, M., May 20 2015, VIII International Peach Symposium. Inglese, P., Xiloyannis, C. & Montanaro, G. (eds.). International Society for Horticultural Science, p. 225-232 8 p. (Acta Horticulturae; vol. 1084).

Research output: Chapter in Book/Report/Conference proceedingChapter

Phytophthora blight (Phytophthora capsici) of pepper and its management

Babadoost, M., Pavon, C., Islam, S. Z. & Tian, D., Dec 23 2015, XXIX International Horticultural Congress on Horticulture: Sustaining Lives, Livelihoods and Landscapes (IHC2014): International Symposia on Innovative Plant Protection in Horticulture, Biosecurity, Quarantine Pests, and Market Access. Hale, C., Hunter, D., Roberts, W., Ikin, R. & McMaugh, S. (eds.). International Society for Horticultural Science, p. 61-66 6 p. (Acta Horticulturae; vol. 1105).

Research output: Chapter in Book/Report/Conference proceedingChapter

Sisal/agave

Davis, S. C. & Long, S. P., Jan 1 2015, Industrial Crops: Breeding for Bioenergy and Bioproducts. Springer New York, p. 335-349 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2014

An alternative sigma factor cascade regulates expression of type III secretion system in Erwinia amylovora

Zhao, Y., Ancona, V., Li, W. & Lee, J. H., Oct 29 2014, XIII International Workshop on Fire Blight. Smits, T. H. M., Holliger, E. & Rezzonico, F. (eds.). International Society for Horticultural Science, p. 155-160 6 p. (Acta Horticulturae; vol. 1056).

Research output: Chapter in Book/Report/Conference proceedingChapter

Cloning major genes controlling fruit flesh color in papaya

Aryal, R. & Ming, R., Jan 1 2014, Genetics and Genomics of Papaya. Springer New York, p. 341-353 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Environmental Sustainability of Cellulosic Energy Cropping Systems

Lowrance, R. & Davis, A., Apr 7 2014, Cellulosic Energy Cropping Systems. Wiley-Blackwell, Vol. 9781119991946. p. 299-313 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Genomics of erwinia amylovora and related erwinia species associated with pome fruit trees

Zhao, Y., Apr 1 2014, Genomics of Plant-Associated Bacteria. Springer-Verlag Berlin Heidelberg, Vol. 9783642553783. p. 1-36 36 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Genomics of papaya sex chromosomes

VanBuren, R. & Ming, R., Jan 1 2014, Genetics and Genomics of Papaya. Springer New York, p. 309-326 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Insights into the Common Ancestor of Eudicots

Li, J., Tang, H., Bowers, J. E., Ming, R. & Paterson, A. H., 2014, Advances in Botanical Research. Academic Press Inc., p. 137-174 38 p. (Advances in Botanical Research; vol. 69).

Research output: Chapter in Book/Report/Conference proceedingChapter

Molecular genetic mapping of papaya

Han, J. & Ming, R., Jan 1 2014, Genetics and Genomics of Papaya. Springer New York, p. 143-155 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Physical mapping of papaya sex chromosomes

Wang, J., Na, J. K. & Ming, R., Jan 1 2014, Genetics and Genomics of Papaya. Springer New York, p. 329-340 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Plants in changing environmental conditions of the anthropocene

Leakey, A. D. B., Jan 1 2014, Ecology and the Environment. Springer New York, p. 533-572 40 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Sequencing and assembly of the transgenic papaya genome

VanBuren, R. & Ming, R., Jan 1 2014, Genetics and Genomics of Papaya. Springer New York, p. 187-203 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Soil chemical insights provided through vibrational spectroscopy

Parikh, S. J., Goyne, K. W., Margenot, A. J., Mukome, F. N. D. & Calderón, F. J., 2014, Advances in Agronomy. Academic Press Inc., p. 1-148 148 p. (Advances in Agronomy; vol. 126).

Research output: Chapter in Book/Report/Conference proceedingChapter

Switchgrass

Mitchell, R., Lee, D. K. & Casler, M., Apr 7 2014, Cellulosic Energy Cropping Systems. Wiley-Blackwell, Vol. 9781119991946. p. 75-89 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Switchgrass and giant Miscanthus agronomy

Lee, D. K., Parrish, A. S. & Voigt, T. B., Oct 1 2014, Engineering and Science of Biomass Feedstock Production and Provision. Springer New York, Vol. 9781489980144. p. 37-59 23 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

The bench scientist’s guide to statistical analysis of RNA-seq data

Yendrek, C. R., Ainsworth, E. A. & Thimmapuram, J., Jan 1 2014, Bioinformatics: The Impact of Accurate Quantification on Proteomic and Genetic Analysis and Research. Apple Academic Press, p. 1-20 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

The GrrSA-Csr global regulatory system plays a critical role in Erwinia amylovora virulence

Ancona, V. & Zhao, Y., Oct 29 2014, XIII International Workshop on Fire Blight. Smits, T. H. M., Holliger, E. & Rezzonico, F. (eds.). International Society for Horticultural Science, p. 207-212 6 p. (Acta Horticulturae; vol. 1056).

Research output: Chapter in Book/Report/Conference proceedingChapter

2013

Bridging classical and molecular genetics of sorghum plant stature and maturity

Brown, P. J. & Paterson, A. H., Jan 1 2013, Genomics of the Saccharinae. Springer New York, p. 333-345 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Genomic Changes in Response to 110 Cycles of Selection for Seed Protein and Oil Concentration in Maize

Lucas, C. J., Zhao, H., Schneerman, M. & Moose, S. P., Feb 5 2013, Seed Genomics. Wiley Blackwell, p. 217-236 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Molecular Clock

Wang, M. & Caetano-Anolles, G., Feb 27 2013, Brenner's Encyclopedia of Genetics: Second Edition. Elsevier Inc., p. 461-462 2 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

RNA World

Caetano-Anolles, G., Feb 27 2013, Brenner's Encyclopedia of Genetics: Second Edition. Elsevier Inc., p. 298-300 3 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

The gene pool of Miscanthus species and its improvement

Sacks, E. J., Juvik, J. A., Lin, Q., Ryan Stewart, J. & Yamada, T., Jan 1 2013, Genomics of the Saccharinae. Springer New York, p. 73-101 29 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Underutilized Grasses

Boe, A., Springer, T., Lee, D., Rayburn, A. L. & Gonzalez-Hernandez, J., Apr 25 2013, Bioenergy Feedstocks: Breeding and Genetics. John Wiley and Sons, p. 173-205 33 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2012

Papaya genome and genomics

Ming, R., Yu, Q. & Moore, P. H., Nov 1 2012, Genomics of Tree Crops. Springer New York, Vol. 9781461409205. p. 241-259 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Papaya sex chromosomes

Gschwend, A. R. & Ming, R., Feb 1 2012, New Insights on Plant Sex Chromosomes. Nova Science Publishers, Inc., p. 51-66 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Tissue-Specific Regulation of Gene Expression by siRNAs in Soybean

Vodkin, L., Zabala, G., Campos, E., Tuteja, J. & Jones, S. I., Jan 10 2012, Designing Soybeans for 21st Century Markets. Elsevier Inc., p. 111-127 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2011

Crop photosynthesis

Earl, H., Bernacchi, C. J. & Medrano, H., Jan 1 2011, Terrestrial Photosynthesis in a Changing Environment a Molecular, Physiological and Ecological Approach. Cambridge University Press, p. 506-520 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Elucidation of General and Condition-Dependent Gene Pathways Using Mixture Models and Bayesian Networks

Rodriguez-Zas, S. & Ko, Y., Apr 21 2011, Applied Statistics for Network Biology: Methods in Systems Biology. Wiley-VCH, Vol. 1. p. 91-103 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Gas-exchange analysis: Basics and problems

Bernacchi, C., Diaz-Espejo, A. & Flexas, J., Jan 1 2011, Terrestrial Photosynthesis in a Changing Environment a Molecular, Physiological and Ecological Approach. Cambridge University Press, p. 115-130 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Global change and photosynthesis

Bernacchi, C. J., Calfapietra, C., Centritto, M. & Valladares, F., Jan 1 2011, Terrestrial Photosynthesis in a Changing Environment a Molecular, Physiological and Ecological Approach. Cambridge University Press, p. 537-545 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Measurement of chloroplast ATP synthesis activity in Arabidopsis

Grennan, A. K. & Ort, D. R., Oct 24 2011, Chloroplast Research in Arabidopsis: Methods and Protocols, Volume II. Vol. 775. p. 343-355 13 p. (Methods in Molecular Biology; vol. 775).

Research output: Chapter in Book/Report/Conference proceedingChapter

Models of photosynthesis

Diaz-Espejo, A., Bernacchi, C. J., Collatz, G. J. & Sharkey, T. D., Jan 1 2011, Terrestrial Photosynthesis in a Changing Environment a Molecular, Physiological and Ecological Approach. Cambridge University Press, p. 98-112 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter