Research Output 1971 2019

2017

Erwinia amylovora in the genomics era: From genomes to pathogen virulence, regulation, and disease control strategies

Smits, T. H. M., Duffy, B., Sundin, G. W., Zhao, Y. & Rezzonico, F., Jan 1 2017, In : Journal of Plant Pathology. 99, Special Issue, p. 7-23 17 p.

Research output: Contribution to journalArticle

Erwinia amylovora
disease control
virulence
genomics
genome
distillers grains
essential amino acids
ethanol
amino acids
corn

Evaluation of DeNitrification DeComposition model for estimating ammonia fluxes from chemical fertilizer application

Balasubramanian, S., Nelson, A., Koloutsou-Vakakis, S., Lin, J., Rood, M. J., Myles, L. T. & Bernacchi, C., May 1 2017, In : Agricultural and Forest Meteorology. 237-238, p. 123-134 12 p.

Research output: Contribution to journalArticle

fertilizer application
denitrification
ammonia
decomposition
degradation

Evaluation of the quantity and composition of sugars and lipid in the juice and bagasse of lipid producing sugarcane

Huang, H., Moreau, R. A., Powell, M. J., Wang, Z., Kannan, B., Altpeter, F., Grennan, A. K., Long, S. P. & Singh, V., Apr 1 2017, In : Biocatalysis and Agricultural Biotechnology. 10, p. 148-155 8 p.

Research output: Contribution to journalArticle

Saccharum
Bagasse
bagasse
Sugars
Lipids

Evolution and expression of the fructokinase gene family in Saccharum

Chen, Y., Zhang, Q., Hu, W., Zhang, X., Wang, L., Hua, X., Yu, Q., Ming, R. & Zhang, J., Feb 21 2017, In : BMC genomics. 18, 1, 197.

Research output: Contribution to journalArticle

fructokinase
Saccharum
Fructokinases
Gene Expression
Droughts

Exploring linear and cyclic (DI)-nucleotides as messengers for regulation of T3SS and biofilm formation in erwinia amylovora

Zhao, Y. & Sundin, G. W., Jan 1 2017, In : Journal of Plant Pathology. 99, Special Issue, p. 25-35 11 p.

Research output: Contribution to journalShort survey

type III secretion system
cyclic nucleotides
Erwinia amylovora
biofilm
sigma factors

Expression of cyanobacterial FBP/SBPase in soybean prevents yield depression under future climate conditions

Köhler, I. H., Ruiz-Vera, U. M., VanLoocke, A., Thomey, M. L., Clemente, T., Long, S. P., Ort, D. R. & Bernacchi, C. J., Jan 1 2017, In : Journal of experimental botany. 68, 3, p. 715-726 12 p.

Research output: Contribution to journalArticle

Climate
Soybeans
carbon dioxide
soybeans
climate

Fine mapping of the SCN resistance QTL cqSCN-006 and cqSCN-007 from Glycine soja PI 468916

Yu, N. & Diers, B. W., Feb 1 2017, In : Euphytica. 213, 2, 54.

Research output: Contribution to journalArticle

Glycine soja
Quantitative Trait Loci
Glycine
quantitative trait loci
Heterodera glycines

First report of Phakopsora pachyrhizi causing rust on Soybean in Ethiopia

Tesfay, A., Kifle, B., Haudenshield, J. S. & Hartman, G. L., Jun 2017, In : Plant disease. 101, 6, 1 p.

Research output: Contribution to journalArticle

Phakopsora pachyrhizi
Ethiopia
soybean rust
soybeans
DNA

First-season crop yield response to organic soil amendments: A meta-analysis

Wortman, S. E., Holmes, A. A., Miernicki, E., Knoche, K. & Pittelkow, C. M., Jan 1 2017, In : Agronomy Journal. 109, 4, p. 1210-1217 8 p.

Research output: Contribution to journalReview article

soil amendments
meta-analysis
organic soils
crop yield
arid zones

Fludioxonil + mefenoxam seed treatment improves edamame seedling emergence

Williams, M. M. & Bradley, C. A., Dec 2017, In : HortTechnology. 27, 6, p. 846-851 6 p.

Research output: Contribution to journalArticle

fludioxonil
seed treatment
seedling emergence
plant establishment
cultivars

Frequency of Gly-210 Deletion Mutation among Protoporphyrinogen Oxidase Inhibitor-Resistant Palmer Amaranth (Amaranthus palmeri) Populations

Salas-Perez, R. A., Burgos, N. R., Rangani, G., Singh, S., Refatti, J. P., Piveta, L., Tranel, P. J., Mauromoustakos, A. & Scott, R. C., Nov 2017, In : Weed Science. 65, 6, p. 718-731 14 p.

Research output: Contribution to journalArticle

Amaranthus palmeri
protoporphyrinogen oxidase
fomesafen
herbicides
glyphosate

Gametophytic self-incompatibility is operative in Miscanthus sinensis (poaceae) and is affected by pistil age

Jiang, J., Guan, Y., McCormick, S., Juvik, J. A., Lubberstedt, T. & Fei, S. Z., Jan 1 2017, In : Crop Science. 57, 4, p. 1948-1956 9 p.

Research output: Contribution to journalArticle

Miscanthus sinensis
pistil
Poaceae
cross pollination
reciprocal crosses

Genetic characterization of the soybean nested association mapping population

Song, Q. J., Yan, L., Quigley, C., Jordan, B. D., Fickus, E., Schroeder, S., Song, B. H., An, Y. Q. C., Hyten, D., Nelson, R., Rainey, K., Beavis, W. D., Specht, J., Diers, B. & Cregan, P., Jan 1 2017, In : Plant Genome. 10, 2

Research output: Contribution to journalArticle

Soybeans
single nucleotide polymorphism
chromosome mapping
Single Nucleotide Polymorphism
inbred lines

Genetic diversity of Miscanthus sinensis in US naturalized populations

Zhao, Y., Basak, S., Fleener, C. E., Egnin, M., Sacks, E. J., Prakash, C. S. & He, G., May 1 2017, In : GCB Bioenergy. 9, 5, p. 965-972 8 p.

Research output: Contribution to journalArticle

Miscanthus sinensis
Miscanthus
genotype
DNA
genetic variation

Genetics and Partitioning for Biomass of Prairie Cordgrass Compared to Switchgrass on Marginal Cropland

Boe, A., Johnson, P. J., Owens, V., Lee, D., Guo, J. & Gonzalez-Hernandez, J. L., Sep 1 2017, In : Bioenergy Research. 10, 3, p. 864-875 12 p.

Research output: Contribution to journalArticle

Spartina pectinata
Panicum virgatum
Biomass
biomass
biomass production

Genome-wide association mapping of crown rust resistance in oat elite germplasm

Esvelt Klos, K., Yimer, B. A., Babiker, E. M., Beattie, A. D., Bonman, J. M., Carson, M. L., Chong, J., Harrison, S. A., Ibrahim, A. M. H., Kolb, F. L., McCartney, C. A., McMullen, M., Mitchell Fetch, J., Mohammadi, M., Murphy, J. P. & Tinker, N. A., Jan 1 2017, In : Plant Genome. 10, 2

Research output: Contribution to journalArticle

crown rust
Crowns
chromosome mapping
oats
germplasm

Genome-wide association mapping of qualitatively inherited traits in a germplasm collection

Bandillo, N. B., Lorenz, A. J., Graef, G. L., Jarquin, D., Hyten, D. L., Nelson, R. L. & Specht, J. E., Jan 1 2017, In : Plant Genome. 10, 2

Research output: Contribution to journalArticle

germplasm conservation
chromosome mapping
single nucleotide polymorphism
Single Nucleotide Polymorphism
Genome

Genome-wide association mapping of resistance to a Brazilian isolate of Sclerotinia sclerotiorum in soybean genotypes mostly from Brazil

Wei, W., Mesquita, A. C. O., Figueiró, A. D. A., Wu, X., Manjunatha, S., Wickland, D. P., Hudson, M., Juliatti, F. C. & Clough, S. J., Nov 7 2017, In : BMC genomics. 18, 1, 849.

Research output: Contribution to journalArticle

Ascomycota
Soybeans
Brazil
Genotype
Genome

Genotype × environment interaction analysis of North American shrub willow yield trials confirms superior performance of triploid hybrids

Fabio, E. S., Volk, T. A., Miller, R. O., Serapiglia, M. J., Gauch, H. G., Van Rees, K. C. J., Hangs, R. D., Amichev, B. Y., Kuzovkina, Y. A., Labrecque, M., Johnson, G. A., Ewy, R. G., Kling, G. J. & Smart, L. B., Feb 1 2017, In : GCB Bioenergy. 9, 2, p. 445-459 15 p.

Research output: Contribution to journalArticle

genotype-environment interaction
triploidy
genotype
shrub
shrubs

Genotype by environment effects on promiscuous nodulation in soybean (Glycine max L. Merrill)

Agoyi, E. E., Odong, T. L., Tumuhairwe, J. B., Chigeza, G., Diers, B. W. & Tukamuhabwa, P., Mar 17 2017, In : Agriculture and Food Security. 6, 1, 29.

Research output: Contribution to journalArticle

nodulation
Soybeans
soybean
Glycine max
genotype

Gibberellins promote brassinosteroids action and both increase heterosis for plant height in Maize (Zea mays L.)

Hu, S., Wang, C., Sanchez, D. L., Lipka, A. E., Liu, P., Yin, Y., Blanco, M. & Lübberstedt, T., Jun 20 2017, In : Frontiers in Plant Science. 8, 1039.

Research output: Contribution to journalArticle

brassinosteroids
heterosis
gibberellins
Zea mays
corn

Glyphosate-resistant waterhemp (Amaranthus tuberculatus var. rudis) in Ontario, Canada

Schryver, M. G., Soltani, N., Hooker, D. C., Robinson, D. E., Tranel, P. J. & Sikkema, P. H., May 9 2017, In : Canadian Journal of Plant Science. 97, 6, p. 1057-1067 11 p.

Research output: Contribution to journalArticle

Amaranthus tuberculatus
glyphosate
Ontario
Canada
imazethapyr

Growth and development of two perennial grasses in ambient light conditions during their natural dormant period

Guo, J., Boe, A., Kim, D. S. & Lee, D., Jan 1 2017, In : Crop Science. 57, 4, p. 2213-2225 13 p.

Research output: Contribution to journalArticle

Spartina pectinata
growth and development
Panicum virgatum
photoperiod
grasses

Herbicide-resistance mechanisms: gene amplification is not just for glyphosate

Tranel, P. J., Nov 2017, In : Pest Management Science. 73, 11, p. 2225-2226 2 p.

Research output: Contribution to journalComment/debate

glyphosate
Herbicide Resistance
Gene Amplification
Herbicides
Glycine

High-throughput phenotyping of maize leaf physiological and biochemical traits using hyperspectral reflectance

Yendrek, C. R., Tomaz, T., Montes, C. M., Cao, Y., Morse, A. M., Brown, P. J., McIntyre, L. M., Leakey, A. & Ainsworth, E., Jan 2017, In : Plant physiology. 173, 1, p. 614-626 13 p.

Research output: Contribution to journalArticle

Chlorophyll
Least-Squares Analysis
reflectance
Zea mays
Nitrogen

High-Throughput resequencing of maize landraces at genomic regions associated with flowering time

Jamann, T. M., Sood, S., Wisser, R. J. & Holland, J. B., Jan 2017, In : PloS one. 12, 1, e0168910.

Research output: Contribution to journalArticle

landraces
Zea mays
Genes
Throughput
flowering

Identification and Characterization of microRNAs from Saccharum officinarum L by Deep Sequencing

Xue, A., Li, Z., Cai, M., Zhang, Q., Zhang, X., Ming, R. R. & Zhang, J., Sep 1 2017, In : Tropical Plant Biology. 10, 2-3, p. 134-150 17 p.

Research output: Contribution to journalArticle

High-Throughput Nucleotide Sequencing
Saccharum
Saccharum officinarum
MicroRNAs
microRNA

Identification and Comparative Mammalian Cell Cytotoxicity of New Iodo-Phenolic Disinfection Byproducts in Chloraminated Oil and Gas Wastewaters

Liberatore, H. K., Plewa, M. J., Wagner, E. D., Vanbriesen, J. M., Burnett, D. B., Cizmas, L. H. & Richardson, S. D., Nov 14 2017, In : Environmental Science and Technology Letters. 4, 11, p. 475-480 6 p.

Research output: Contribution to journalArticle

Disinfection
Cytotoxicity
Waste Water
disinfection
Trihalomethanes

Identification of capsid/coat related protein folds and their utility for virus classification

Nasir, A. & Caetano-Anolles, G., Mar 10 2017, In : Frontiers in Microbiology. 8, MAR, 380.

Research output: Contribution to journalArticle

Capsid
Capsid Proteins
Viruses
Metagenome
Planets

Identification of large variation in the photosynthetic induction response among 37 soybean [Glycine max (L.) Merr.] genotypes that is not correlated with steady-state photosynthetic capacity

Soleh, M. A., Tanaka, Y., Kim, S. Y., Huber, S. C., Sakoda, K. & Shiraiwa, T., Mar 1 2017, In : Photosynthesis research. 131, 3, p. 305-315 11 p.

Research output: Contribution to journalArticle

Soybeans
Glycine
Glycine max
Oxygenases
Photosynthesis

Impact of seed protein alleles from three soybean sources on seed composition and agronomic traits

Brzostowski, L. F., Pruski, T. I., Specht, J. E. & Diers, B. W., Nov 1 2017, In : Theoretical and Applied Genetics. 130, 11, p. 2315-2326 12 p.

Research output: Contribution to journalArticle

Soybeans
agronomic traits
Seeds
Alleles
soybeans

Impact of soybean cyst nematode resistance on soybean yield

Rincker, K., Cary, T. & Diers, B. W., Jan 1 2017, In : Crop Science. 57, 3, p. 1373-1382 10 p.

Research output: Contribution to journalArticle

Heterodera glycines
soybeans
nematode infections
testing
maturity groups

Importance of biophysical effects on climate warming mitigation potential of biofuel crops over the conterminous United States

Zhu, P., Zhuang, Q., Eva, J. & Bernacchi, C., Mar 1 2017, In : GCB Bioenergy. 9, 3, p. 577-590 14 p.

Research output: Contribution to journalArticle

energy crops
Biofuels
biofuel
global warming
Crops

Influence of 1-Methylcyclopropene Treatment on Postharvest Quality of Four Scab (Venturia inaequalis)-Resistant Apple Cultivars

Zucoloto, M., Ku, K. M., Kim, M. J. & Kushad, M. M., Jan 1 2017, In : Journal of Food Quality. 2017, 5951041.

Research output: Contribution to journalArticle

Venturia inaequalis
1-methylcyclopropene
Malus
Fruits
storage quality

Investigation of nuclear enzyme topoisomerase as a putative molecular target of monohaloacetonitrile disinfection by-products

Komaki, Y. & Plewa, M. J., Aug 2017, In : Journal of Environmental Sciences. 58, p. 231-238 8 p.

Research output: Contribution to journalArticle

Type II DNA Topoisomerase
Disinfection
disinfection
Byproducts
Toxicity

IR Spectroscopy, Soil Analysis Applications

Margenot, A. J., Calderón, F. J., Goyne, K. W., Mukome, F. N. D. & Parikh, S. J., Jan 1 2017, Encyclopedia of Spectroscopy and Spectrometry. Elsevier Inc., p. 448-454 7 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Infrared spectroscopy
soils
Soils
infrared spectroscopy
Fourier transform infrared spectroscopy

Isolation of ripening-related genes from ethylene/1-MCP treated papaya through RNA-seq

Shen, Y. H., Lu, B. G., Feng, L., Yang, F. Y., Geng, J. J., Ming, R. R. & Chen, X. J., Aug 31 2017, In : BMC genomics. 18, 1, 671.

Research output: Contribution to journalArticle

Carica
RNA
Fruit
Genes
Carotenoids

Leaf and canopy scale drivers of genotypic variation in soybean response to elevated carbon dioxide concentration

Sanz-Sáez, Á., Koester, R. P., Rosenthal, D. M., Montes, C. M., Ort, D. R. & Ainsworth, E., Sep 2017, In : Global change biology. 23, 9, p. 3908-3920 13 p.

Research output: Contribution to journalArticle

Carbon Dioxide
Crops
soybean
Seed
carbon dioxide

Livelihoods and production diversity on U.S. permaculture farms

Ferguson, R. S. & Lovell, S. T., Jul 3 2017, In : Agroecology and Sustainable Food Systems. 41, 6, p. 588-613 26 p.

Research output: Contribution to journalArticle

permaculture
livelihood
Farms
farm
farms

Long-term evolution of viruses: A Janus-faced balance

Nasir, A., Kim, K. M. & Caetano-Anolles, G., Aug 2017, In : BioEssays. 39, 8, 1700026.

Research output: Contribution to journalReview article

Long Term Evolution (LTE)
Viruses
Virus Latency
Symbiosis
Metagenomics

Loss of photosynthetic efficiency in the shade. An Achilles heel for the dense modern stands of our most productive C 4 crops?

Pignon, C. P., Jaiswal, D., McGrath, J. M. & Long, S. P., Jan 1 2017, In : Journal of experimental botany. 68, 2, p. 335-345 11 p.

Research output: Contribution to journalArticle

Carbon Monoxide
shade
canopy
crops
assimilation (physiology)

Macroevolutionary synthesis of flowering plant sexual systems

Goldberg, E. E., Otto, S. P., Vamosi, J. C., Mayrose, I., Sabath, N., Ming, R. R. & Ashman, T. L., Apr 1 2017, In : Evolution. 71, 4, p. 898-912 15 p.

Research output: Contribution to journalArticle

sexual systems
Sex Differentiation
angiosperm
dioecy
hermaphroditism

Meiotic pairing as an indicator of genome composition in polyploid prairie cordgrass (Spartina pectinata Link)

Bishop, J. W., Kim, S., Villamil, M. B., Lee, D. & Rayburn, A. L., Apr 1 2017, In : Genetica. 145, 2, p. 235-240 6 p.

Research output: Contribution to journalArticle

Spartina pectinata
Polyploidy
Tetraploidy
cytotypes
polyploidy

Meta-analysis constrained by data: Recommendations to improve relevance of nutrient management research

Eagle, A. J., Christianson, L. E., Cook, R. L., Harmel, R. D., Miguez, F. E., Qian, S. S. & Ruiz Diaz, D. A., Nov 1 2017, In : Agronomy Journal. 109, 6, p. 2441-2449 9 p.

Research output: Contribution to journalArticle

nutrient management
meta-analysis
synthesis
researchers
agriculture

Metagenome-wide association study and machine learning prediction of bulk soil microbiome and crop productivity

Chang, H. X., Haudenshield, J. S., Bowen, C. R. & Hartman, G. L., Apr 3 2017, In : Frontiers in Microbiology. 8, APR, 519.

Research output: Contribution to journalArticle

Association Learning
Metagenome
Microbiota
Soil
Efficiency

Microsatellite markers reveal a predominant sugarcane aphid (homoptera: Aphididae) clone is found on sorghum in seven states and one territory of the USA

Harris-Shultz, K., Ni, X., Wadl, P. A., Wang, X., Wang, H., Huang, F., Flanders, K., Seiter, N. J., Kerns, D., Meagher, R., Xue, Q., Reisig, D., Buntin, D., Cuevas, H. E., Brewer, M. J. & Yang, X., Jan 1 2017, In : Crop Science. 57, 4, p. 2064-2072 9 p.

Research output: Contribution to journalArticle

Open Access
Melanaphis sacchari
Aphididae
Sorghum (Poaceae)
Homoptera
sugarcane

Mimivirus: Leading the way in the discovery of giant viruses of amoebae

Colson, P., La Scola, B., Levasseur, A., Caetano-Anolles, G. & Raoult, D., Mar 13 2017, In : Nature Reviews Microbiology. 15, 4, p. 243-254 12 p.

Research output: Contribution to journalReview article

Mimiviridae
Amoeba
Viruses
Virus Internalization
Virology

Molecular characterization of a new soybean-infecting member of the genus Nepovirus identified by high-throughput sequencing

Yasmin, T., Nelson, B. D., Hobbs, H. A., McCoppin, N. K., Lambert, K. N. & Domier, L. L., Apr 1 2017, In : Archives of Virology. 162, 4, p. 1089-1092 4 p.

Research output: Contribution to journalArticle

Nepovirus
Soybeans
Open Reading Frames
Complementary DNA
Viruses

Molecular constraints on resistance-tolerance trade-offs

Mesa, J. M., Scholes, D. R., Juvik, J. A. & Paige, K. N., Oct 1 2017, In : Ecology. 98, 10, p. 2528-2537 10 p.

Research output: Contribution to journalArticle

endopolyploidy
tolerance
glucosinolates
chromosome number
herbivores