Research Output 1975 2020

2018
Amaranthus
single nucleotide polymorphism
internal transcribed spacers
Amaranthus tuberculatus
National Center for Biotechnology Information

Identification of missing variants by combining multiple analytic pipelines

Ren, Y., Reddy, J. S., Pottier, C., Sarangi, V., Tian, S., Sinnwell, J. P., McDonnell, S. K., Biernacka, J. M., Carrasquillo, M. M., Ross, O. A., Ertekin-Taner, N., Rademakers, R., Hudson, M., Mainzer, L. S. & Asmann, Y. W., Apr 16 2018, In : BMC bioinformatics. 19, 1, 139.

Research output: Contribution to journalArticle

Sample Size
Pipelines
Gene Frequency
Alzheimer Disease
Sequencing

Identification of quantitative trait loci for goss’s wilt of maize

Cooper, J. S., Balint-Kurti, P. J. & Jamann, T. M., May 1 2018, In : Crop Science. 58, 3, p. 1192-1200 9 p.

Research output: Contribution to journalArticle

quantitative trait loci
leaf blight
corn
Setosphaeria turcica
leaf spot

Identifying barriers and motivators for adoption of multifunctional perennial cropping systems by landowners in the Upper Sangamon River Watershed, Illinois

Mattia, C. M., Lovell, S. T. & Davis, A., Oct 1 2018, In : Agroforestry Systems. 92, 5, p. 1155-1169 15 p.

Research output: Contribution to journalArticle

landowners
landowner
cropping systems
cropping practice
watershed

Identifying marginal land for Multifunctional Perennial Cropping Systems in the Upper Sangamon River watershed, Illinois

Mattia, C., Lovell, S. T. & Fraterrigo, J., Nov 1 2018, In : Journal of Soil and Water Conservation. 73, 6, p. 669-681 13 p.

Research output: Contribution to journalArticle

landowners
landowner
cropping systems
cropping practice
watershed

Immobility in the sedentary plant-parasitic nematode H. glycines is associated with remodeling of neuromuscular tissue

Han, Z., Thapa, S., Reuter-Carlson, U., Reed, H., Gates, M., Lambert, K. N. & Schroeder, N. E., Aug 2018, In : PLoS pathogens. 14, 8, e1007198.

Research output: Contribution to journalArticle

Glycine
Muscular Atrophy
Tylenchoidea
GABAergic Neurons
Molting

Increasing drought and diminishing benefits of elevated carbon dioxide for soybean yields across the US Midwest

Jin, Z., Ainsworth, E., Leakey, A. & Lobell, D. B., Feb 1 2018, In : Global change biology. 24, 2, p. e522-e533

Research output: Contribution to journalArticle

Drought
Carbon Dioxide
Transpiration
soybean
carbon dioxide

Increasing yield stability and input efficiencies with cost-effective mechanization in Nepal

Park, A. G., McDonald, A. J., Devkota, M. & Davis, A., Nov 1 2018, In : Field Crops Research. 228, p. 93-101 9 p.

Research output: Contribution to journalArticle

mechanization
Nepal
seed
cost
farming systems

Inpactor, integrated and parallel analyzer and classifier of LTR retrotransposons and ITS application for pineapple LTR retrotransposons diversity and dynamics

Orozco-Arias, S., Liu, J., Tabares-Soto, R., Ceballos, D., Domingues, D. S., Garavito, A., Ming, R. & Guyot, R., Jan 1 2018, In : Biology. 7, 2, 32.

Research output: Contribution to journalArticle

Ananas
Retroelements
terminal repeat sequences
Terminal Repeat Sequences
retrotransposons
cassava
ground penetrating radar
Radar
plots
radar data

Integration of multiple stimuli-sensing systems to regulate HrpS and type III secretion system in Erwinia amylovora

Lee, J. H. & Zhao, Y., Feb 1 2018, In : Molecular Genetics and Genomics. 293, 1, p. 187-196 10 p.

Research output: Contribution to journalArticle

Erwinia amylovora
Gene Expression
Integration Host Factors
Genes
Virulence

Integration of sudden death syndrome resistance loci in the soybean genome

Chang, H. X., Roth, M. G., Wang, D., Cianzio, S. R., Lightfoot, D. A., Hartman, G. L. & Chilvers, M. I., Apr 1 2018, In : Theoretical and Applied Genetics. 131, 4, p. 757-773 17 p.

Research output: Contribution to journalReview article

Sudden Death
Soybeans
Genome
soybeans
death

Interplay Between Amphetamine and Activity Level in Gene Networks of the Mouse Striatum

Goncalves, T. M., Southey, B. R. & Rodriguez-Zas, S. L., Dec 1 2018, In : Bioinformatics and Biology Insights. 12

Research output: Contribution to journalArticle

Gene Networks
Gene Regulatory Networks
Amphetamine
Mouse
Genes

Invasion complexity at large spatial scales is an emergent property of interactions among landscape characteristics and invader traits

Muthukrishnan, R., Davis, A. S., Jordan, N. R. & Forester, J. D., May 2018, In : PloS one. 13, 5, e0195892.

Research output: Contribution to journalArticle

Population Growth
Ecology
Population Density
Biomass
Crops

Leaf stable carbon isotope composition reflects transpiration efficiency in Zea mays

Twohey, R. J., Roberts, L. M. & Studer, A. J., Jan 1 2018, (Accepted/In press) In : Plant Journal.

Research output: Contribution to journalArticle

Carbon Isotopes
Zea mays
transpiration
isotopes
Water

Limited fitness costs of herbicide-resistance traits in Amaranthus tuberculatus facilitate resistance evolution

Wu, C., Davis, A. & Tranel, P. J., Jan 1 2018, In : Pest Management Science. 74, 2, p. 293-301 9 p.

Research output: Contribution to journalArticle

Amaranthus tuberculatus
herbicide resistance
herbicides
glyphosate
protoporphyrinogen oxidase

Long-term crop rotation and tillage effects on soil greenhouse gas emissions and crop production in Illinois, USA

Behnke, G. D., Zuber, S. M., Pittelkow, C. M., Nafziger, E. D. & Villamil, M. B., Jul 1 2018, In : Agriculture, Ecosystems and Environment. 261, p. 62-70 9 p.

Research output: Contribution to journalArticle

soil gas
crop rotation
greenhouse gas emissions
crop production
tillage
Protease La
Erwinia amylovora
type III secretion system
virulence
Virulence

Loss-of-function mutations in the dpp and opp permeases render erwinia amylovora resistant to kasugamycin and blasticidin S

Ge, Y., Lee, J. H., Hu, B. & Zhao, Y., Aug 2018, In : Molecular Plant-Microbe Interactions. 31, 8, p. 823-832 10 p.

Research output: Contribution to journalArticle

blasticidin S
Erwinia amylovora
Membrane Transport Proteins
oligopeptides
dipeptides

Maize Genomes to Fields: 2014 and 2015 field season genotype, phenotype, environment, and inbred ear image datasets

Alkhalifah, N., Campbell, D. A., Falcon, C. M., Gardiner, J. M., Miller, N. D., Romay, M. C., Walls, R., Walton, R., Yeh, C. T., Bohn, M., Bubert, J., Buckler, E. S., Ciampitti, I., Flint-Garcia, S., Gore, M. A., Graham, C., Hirsch, C., Holland, J. B., Hooker, D., Kaeppler, S. & 24 others, Knoll, J., Lauter, N., Lee, E. C., Lorenz, A., Lynch, J. P., Moose, S. P., Murray, S. C., Nelson, R., Rocheford, T., Rodriguez, O., Schnable, J. C., Scully, B., Smith, M., Springer, N., Thomison, P., Tuinstra, M., Wisser, R. J., Xu, W., Ertl, D., Schnable, P. S., De Leon, N., Spalding, E. P., Edwards, J. & Lawrence-Dill, C. J., Jul 9 2018, In : BMC Research Notes. 11, 1, 452.

Research output: Contribution to journalArticle

Zea mays
Ear
Genes
Genotype
Genome

Mapping of new quantitative trait loci for sudden death syndrome and soybean cyst nematode resistance in two soybean populations

Swaminathan, S., Abeysekara, N. S., Knight, J. M., Liu, M., Dong, J., Hudson, M., Bhattacharyya, M. K. & Cianzio, S. R., May 1 2018, In : Theoretical and Applied Genetics. 131, 5, p. 1047-1062 16 p.

Research output: Contribution to journalArticle

Heterodera glycines
Quantitative Trait Loci
Sudden Death
Soybeans
Cysts

Metabolic pathway of topramezone in multiple-resistant waterhemp (Amaranthus tuberculatus) differs from naturally tolerant maize

Lygin, A. V., Kaundun, S. S., Morris, J. A., Mcindoe, E., Hamilton, A. R. & Riechers, D. E., Jan 1 2018, In : Frontiers in Plant Science. 871, 1644.

Research output: Contribution to journalArticle

Metabolites
Herbicides
Metabolism
Hydroxylation
Benzoic acid

Metabolism of 2,4-dichlorophenoxyacetic acid contributes to resistance in a common waterhemp (Amaranthus tuberculatus) population

Figueiredo, M. R. A., Leibhart, L. J., Reicher, Z. J., Tranel, P. J., Nissen, S. J., Westra, P., Bernards, M. L., Kruger, G. R., Gaines, T. A. & Jugulam, M., Oct 2018, In : Pest Management Science. 74, 10, p. 2356-2362 7 p.

Research output: Contribution to journalArticle

Amaranthus tuberculatus
2,4-D
metabolism
malathion
cytochrome P-450
Electric network analysis
Metabolites
Arabidopsis
Cold-Shock Response
Activity Cycles

Methodological recommendations for optimizing assays of enzyme activities in soil samples

Margenot, A. J., Nakayama, Y. & Parikh, S. J., Jan 1 2018, (Accepted/In press) In : Soil Biology and Biochemistry.

Research output: Contribution to journalArticle

nitrophenols
Enzyme Assays
enzyme activity
Soil
soil sampling

New insights into the evolution and functional divergence of the SWEET family in Saccharum based on comparative genomics

Hu, W., Hua, X., Zhang, Q., Wang, J., Shen, Q., Zhang, X., Wang, K., Yu, Q., Lin, Y. R., Ming, R. R. & Zhang, J., Nov 7 2018, In : BMC Plant Biology. 18, 1, 270.

Research output: Contribution to journalArticle

Saccharum
transporters
sugars
genomics
Saccharum spontaneum

Nitrogen use efficiency and the genetic variation of maize expired plant variety protection germplasm

Mastrodomenico, A. T., Hendrix, C. C. & Below, F. E., Jan 2018, In : Agriculture (Switzerland). 8, 1, 3.

Research output: Contribution to journalArticle

plant variety protection
nutrient use efficiency
Zea mays
germplasm
nitrogen fertilizers

Optimizing photorespiration for improved crop productivity

South, P. F., Cavanagh, A. P., Lopez-Calcagno, P. E., Raines, C. A. & Ort, D. R., Dec 2018, In : Journal of Integrative Plant Biology. 60, 12, p. 1217-1230 14 p.

Research output: Contribution to journalReview article

photorespiration
Crops
ribulose 1,5-diphosphate
Productivity
Oxygenases

Optimizing RNA-seq studies to investigate herbicide resistance

Giacomini, D. A., Gaines, T., Beffa, R. & Tranel, P. J., Oct 2018, In : Pest Management Science. 74, 10, p. 2260-2264 5 p.

Research output: Contribution to journalReview article

herbicide resistance
sequence analysis
herbicides
weed science
biotypes

Order and polarity in character state transformation models that root the tree of life

Caetano-Anollés, K., Caetano-Anollés, D., Nasir, A., Kim, K. M. & Caetano-Anollés, G., Jun 2018, In : Biochimie. 149, p. 135-136 2 p.

Research output: Contribution to journalLetter

Origins and structure of chloroplastic and mitochondrial plant protoporphyrinogen oxidases: implications for the evolution of herbicide resistance

Dayan, F. E., Barker, A. & Tranel, P. J., Oct 2018, In : Pest Management Science. 74, 10, p. 2226-2234 9 p.

Research output: Contribution to journalReview article

protoporphyrinogen oxidase
herbicide resistance
mutation
arginine
Amaranthus tuberculatus

Ozone effects on crops and consideration in crop models

Emberson, L. D., Pleijel, H., Ainsworth, E. A., van den Berg, M., Ren, W., Osborne, S., Mills, G., Pandey, D., Dentener, F., Büker, P., Ewert, F., Koeble, R. & Van Dingenen, R., Oct 2018, In : European Journal of Agronomy. 100, p. 19-34 16 p.

Research output: Contribution to journalArticle

crop models
ozone
crop
crops
growth models

Ozone pollution will compromise efforts to increase global wheat production

Mills, G., Sharps, K., Simpson, D., Pleijel, H., Broberg, M., Uddling, J., Jaramillo, F., Davies, W. J., Dentener, F., Van den Berg, M., Agrawal, M., Agrawal, SB., Ainsworth, E. A., Büker, P., Emberson, L., Feng, Z., Harmens, H., Hayes, F., Kobayashi, K., Paoletti, E. & 1 others, Van Dingenen, R., Aug 2018, In : Global change biology. 24, 8, p. 3560-3574 15 p.

Research output: Contribution to journalArticle

Ozone
Pollution
wheat
ozone
pollution

Papain-like cysteine proteases in Carica papaya: Lineage-specific gene duplication and expansion

Liu, J., Sharma, A., Niewiara, M. J., Singh, R., Ming, R. R. & Yu, Q., Jan 6 2018, In : BMC genomics. 19, 1, 26.

Research output: Contribution to journalArticle

Carica
Gene Duplication
Papain
Cysteine Proteases
Genes

PGD: Pineapple Genomics Database

Xu, H., Yu, Q., Shi, Y., Hua, X., Tang, H., Yang, L., Ming, R. R. & Zhang, J., Dec 1 2018, In : Horticulture Research. 5, 1, 66.

Research output: Contribution to journalArticle

Ananas
Prostaglandins D
pineapples
Genomics
Databases

Phloem function: a key to understanding and manipulating plant responses to rising atmospheric [CO2]?

Ainsworth, E. & Lemonnier, P., Jun 2018, In : Current opinion in plant biology. 43, p. 50-56 7 p.

Research output: Contribution to journalReview article

phloem
plant response
carbon dioxide
phloem loading
sucrose

Photosystem II Subunit S overexpression increases the efficiency of water use in a field-grown crop

Głowacka, K., Kromdijk, J., Kucera, K., Xie, J., Cavanagh, A. P., Leonelli, L., Leakey, A. D. B., Ort, D. R., Niyogi, K. K. & Long, S. P., Dec 1 2018, In : Nature communications. 9, 1, 868.

Research output: Contribution to journalArticle

Photosystem II Protein Complex
crops
Crops
Water
water

Plastic carrier polishing chamber reduces pollution swapping from denitrifying woodchip bioreactors

Christianson, L. E., Feyereisen, G., Lepine, C. & Summerfelt, S. T., May 2018, In : Aquacultural Engineering. 81, p. 33-37 5 p.

Research output: Contribution to journalArticle

wood chips
bioreactors
bioreactor
plastics
plastic

Population and community structure shifts of ammonia oxidizers after four-year successive biochar application to agricultural acidic and alkaline soils

He, L., Bi, Y., Zhao, J., Pittelkow, C. M., Zhao, X., Wang, S. & Xing, G., Apr 1 2018, In : Science of the Total Environment. 619-620, p. 1105-1115 11 p.

Research output: Contribution to journalArticle

Ammonia
population structure
community structure
ammonia
Soils

Postembryonic ventral nerve cord development and gonad migration in steinernema carpocapsae

Bui, H. X. & Schroeder, N. E., Jan 1 2018, In : Journal of Nematology. 50, 1, p. 27-32 6 p.

Research output: Contribution to journalArticle

ventral nerve cord
Steinernema carpocapsae
gonads
Caenorhabditis elegans
entomopathogenic nematodes
soil management
History
Nitrogen
Soils
nitrogen

Priorities for wheat intensification in the Eastern Indo-Gangetic Plains

Park, A., Davis, A. & McDonald, A., Jun 2018, In : Global Food Security. 17, p. 1-8 8 p.

Research output: Contribution to journalReview article

Triticum
wheat
plain

QTL mapping and epistatic interaction analysis of field resistance to sudden death syndrome (Fusarium virguliforme) in soybean

Tan, R., Serven, B., Collins, P. J., Zhang, Z., Wen, Z., Boyse, J. F., Gu, C., Chilvers, M. I., Diers, B. W. & Wang, D., Aug 1 2018, In : Theoretical and Applied Genetics. 131, 8, p. 1729-1740 12 p.

Research output: Contribution to journalArticle

Quantitative Trait Loci
Fusarium
Sudden Death
Soybeans
quantitative trait loci
Amaranthus tuberculatus
isoxaflutole
mesotrione
metribuzin
atrazine

Quantitative trait loci mapping of western corn rootworm (coleoptera: Chrysomelidae) host plant resistance in two populations of doubled haploid lines in maize (Zea mays L.)

Bohn, M. O., Marroquin, J. J., Flint-Garcia, S., Dashiell, K., Willmot, D. B. & Hibbard, B. E., Jan 1 2018, In : Journal of economic entomology. 111, 1, p. 435-444 10 p.

Research output: Contribution to journalArticle

Diabrotica virgifera virgifera
doubled haploids
Chrysomelidae
host plant
quantitative trait loci
nut trees
alley cropping
nut
fruit trees
fruit

Registration of two wheat germplasm lines fixed for Pm58

Wiersma, A. T., Whetten, R. B., Zhang, G., Sehgal, S. K., Kolb, F. L., Poland, J. A., Mason, R. E., Carter, A. H., Cowger, C. & Olson, E. L., May 2018, In : Journal of Plant Registrations. 12, 2, p. 270-273 4 p.

Research output: Contribution to journalArticle

Triticum
germplasm
powdery mildew
wheat
hard white wheat

Reproductive sink of sweet corn in response to plant density and hybrid

Williams, M. M., Jan 2018, In : HortScience. 53, 1, p. 28-32 5 p.

Research output: Contribution to journalArticle

sweetcorn
plant density
ears
seeds
reproductive traits

Response of maize hybrids with and without rootworm- and drought-Tolerance to rootworm infestation under well-Watered and drought conditions

Mahmoud, M. A. B., Sharp, R. E., Oliver, M. J., Finke, D. L., Bohn, M., Ellersieck, M. R. & Hibbard, B. E., Jan 1 2018, In : Journal of economic entomology. 111, 1, p. 193-208 16 p.

Research output: Contribution to journalArticle

rootworms
drought tolerance
tolerance
drought
maize

Reviewing research priorities in weed ecology, evolution and management: a horizon scan

Neve, P., Barney, J. N., Buckley, Y., Cousens, R. D., Graham, S., Jordan, N. R., Lawton-Rauh, A., Liebman, M., Mesgaran, M. B., Schut, M., Shaw, J., Storkey, J., Baraibar, B., Baucom, R. S., Chalak, M., Childs, D. Z., Christensen, S., Eizenberg, H., Fernández-Quintanilla, C., French, K. & 15 others, Harsch, M., Heijting, S., Harrison, L., Loddo, D., Macel, M., Maczey, N., Merotto, A., Mortensen, D., Necajeva, J., Peltzer, D. A., Recasens, J., Renton, M., Riemens, M., Sønderskov, M. & Williams, M., Aug 2018, In : Weed Research. 58, 4, p. 250-258 9 p.

Research output: Contribution to journalReview article

weed
weeds
ecology
weed control
exercise