Research Output 1971 2019

2018

First report of Grapevine red blotch virus in ohio vineyards

Yao, X. L., Han, J., Domier, L. L., Qu, F. & Ivey, M. L. L., Feb 2018, In : Plant disease. 102, 2, 1 p.

Research output: Contribution to journalComment/debate

vineyards
viruses

First report of paramyrothecium roridum causing myrothecium leaf spot on soybean in Africa

Haudenshield, J. S., Miranda, C. & Hartman, G. L., Jan 1 2018, In : Plant disease. 102, 12, 1 p.

Research output: Contribution to journalComment/debate

Myrothecium
leaf spot
soybeans

First report of Puccinia sparganioides affecting prairie cordgrass (Spartina pectinata) in Illinois

Kenaley, S. C., Gu, M., Bergstrom, G. C. & Lee, D., Jul 2018, In : Plant disease. 102, 7, 1 p.

Research output: Contribution to journalComment/debate

Spartina pectinata
Puccinia

First report of Tomato ringspot virus in an Ohio Vineyard

Yao, X. L., Han, J., Domier, L. L., Qu, F. & Lewis Ivey, M. L., Jan 2018, In : Plant disease. 102, 1, 1 p.

Research output: Contribution to journalComment/debate

Tomato ringspot virus
vineyards

Formation of DBPs and halogen-specific TOX in the presence of iopamidol and chlorinated oxidants

Ackerson, N. O. B., Machek, E. J., Killinger, A. H., Crafton, E. A., Kumkum, P., Liberatore, H. K., Plewa, M. J., Richardson, S. D., Ternes, T. A. & Duirk, S. E., Jul 2018, In : Chemosphere. 202, p. 349-357 9 p.

Research output: Contribution to journalArticle

Iopamidol
Halogens
halogen
Oxidants
oxidant

Formation of regulated and unregulated disinfection byproducts during chlorination of algal organic matter extracted from freshwater and marine algae

Liu, C., Ersan, M. S., Plewa, M. J., Amy, G. & Karanfil, T., Oct 1 2018, In : Water Research. 142, p. 313-324 12 p.

Research output: Contribution to journalArticle

Disinfection
Chlorination
Algae
chlorination
disinfection

Four tyrosine residues of the rice immune receptor XA21 are not required for interaction with the co-receptor OsSERK2 or resistance to Xanthomonas oryzae pv. oryzae

Caddell, D. F., Wei, T., Sharma, S., Oh, M. H., Park, C. J., Canlas, P., Huber, S. C. & Ronald, P. C., Jan 1 2018, In : PeerJ. 2018, 12, e6074.

Research output: Contribution to journalArticle

Xanthomonas
Xanthomonas oryzae pv. oryzae
Tyrosine
tyrosine
rice

Frontiers in alley cropping: Transformative solutions for temperate agriculture

Wolz, K. J., Lovell, S. T., Branham, B. E., Eddy, W. C., Keeley, K., Revord, R. S., Wander, M. M., Yang, W. & Delucia, E. H., Mar 2018, In : Global change biology. 24, 3, p. 883-894 12 p.

Research output: Contribution to journalComment/debate

alley cropping
Agriculture
Crops
Land use
Climate change
Trigeminal Nuclei
Trigeminal Ganglion
Gene Regulatory Networks
Hyperalgesia
Nucleus Accumbens

Genetically diverse soybean cyst nematode-resistant full-sib soybean germplasm lines AR4SCN, AR5SCN, AR6SCN, AR7SCN, and AR8SCN

Cianzio, S. R., Arelli, P. R., Swaminathan, S., Lundeen, P., Gebhart, G., Rivera-Velez, N., Guilherme, S. R., Soares, I. O., Diers, B. W., Knapp, H., Westgate, M. & Hudson, M., Jan 2018, In : Journal of Plant Registrations. 12, 1, p. 124-131 8 p.

Research output: Contribution to journalArticle

Heterodera glycines
Soybeans
Cysts
germplasm
soybeans

Genetic architecture of soybean yield and agronomic traits

Diers, B. W., Specht, J., Rainey, K. M., Cregan, P., Song, Q., Ramasubramanian, V., Graef, G., Nelson, R. L., Schapaugh, W., Wang, D., Shannon, G., Mchale, L., Kantartzi, S. K., Xavier, A., Mian, R., Stupar, R. M., Michno, J. M., An, Y. Q. C., Goettel, W., Ward, R. & 5 others, Fox, C., Lipka, A. E., Hyten, D., Cary, T. & Beavis, W. D., Oct 1 2018, In : G3: Genes, Genomes, Genetics. 8, 10, p. 3367-3375 9 p.

Research output: Contribution to journalArticle

Soybeans
Single Nucleotide Polymorphism
Seeds
Alleles
Vegetable Proteins

Genetic introgression from Glycine tomentella to soybean to increase seed yield

Akpertey, A., Singh, R. J., Diers, B. W., Graef, G. L., Mian, M. A. R., Shannon, J. G., Scaboo, A. M., Hudson, M., Thurber, C. S., Brown, P. J. & Nelson, R. L., May 1 2018, In : Crop Science. 58, 3, p. 1277-1291 15 p.

Research output: Contribution to journalArticle

Glycine tomentella
introgression
seed yield
soybeans
maturity groups

Genetic mapping of biomass yield in three interconnected Miscanthus populations

Dong, H., Liu, S., Clark, L. V., Sharma, S., Gifford, J. M., Juvik, J. A., Lipka, A. E. & Sacks, E. J., Mar 2018, In : GCB Bioenergy. 10, 3, p. 165-185 21 p.

Research output: Contribution to journalArticle

Miscanthus
chromosome mapping
quantitative trait loci
Biomass
biomass

Genome sequence of the soybean cyst nematode (Heterodera glycines) endosymbiont "Candidatus Cardinium hertigii" strain cHgTN10

Showmaker, K. C., Walden, K. K. O., Fields, C. J., Lambert, K. N. & Hudson, M., Jun 1 2018, In : Genome Announcements. 6, 26, e00624-18.

Research output: Contribution to journalArticle

Soybeans
Glycine
Cysts
Genome
Bacteria

Genome-wide analysis of grain yield stability and environmental interactions in a multiparental soybean population

Xavier, A., Jarquin, D., Howard, R., Ramasubramanian, V., Specht, J. E., Graef, G. L., Beavis, W. D., Diers, B. W., Song, Q., Cregan, P. B., Nelson, R. L., Mian, R., Grover Shannon, J., McHale, L., Wang, D., Schapaugh, W., Lorenz, A. J., Xu, S., Muir, W. M. & Rainey, K. M., Feb 1 2018, In : G3: Genes, Genomes, Genetics. 8, 2, p. 519-529 11 p.

Research output: Contribution to journalArticle

Soybeans
Genome
Genotype
Population
Breeding

Genotoxicity Assessment of Drinking Water Disinfection Byproducts by DNA Damage and Repair Pathway Profiling Analysis

Lan, J., Rahman, S. M., Gou, N., Jiang, T., Plewa, M. J., Alshawabkeh, A. & Gu, A. Z., Jun 5 2018, In : Environmental Science and Technology. 52, 11, p. 6565-6575 11 p.

Research output: Contribution to journalArticle

Disinfection
genotoxicity
Drinking Water
disinfection
repair

Glyphosate-Resistant Junglerice (Echinochloa colona) from Mississippi and Tennessee: Magnitude and Resistance Mechanisms

Nandula, V. K., Montgomery, G. B., Vennapusa, A. R., Jugulam, M., Giacomini, D. A., Ray, J. D., Bond, J. A., Steckel, L. E. & Tranel, P. J., Sep 1 2018, In : Weed Science. 66, 5, p. 603-610 8 p.

Research output: Contribution to journalArticle

Echinochloa colona
glyphosate
resistance mechanisms
biotypes
at-risk population

Grazing alters net ecosystem C fluxes and the global warming potential of a subtropical pasture

Gomez-Casanovas, N., Delucia, N. J., Bernacchi, C., Boughton, E. H., Sparks, J. P., Chamberlain, S. D. & Delucia, E. H., Mar 2018, In : Ecological Applications. 28, 2, p. 557-572 16 p.

Research output: Contribution to journalArticle

global warming
pasture
grazing
ecosystem
soil emission

Haloacetic Acid Water Disinfection Byproducts Affect Pyruvate Dehydrogenase Activity and Disrupt Cellular Metabolism

Dad, A., Jeong, C. H., Wagner, E. D. & Plewa, M. J., Feb 6 2018, In : Environmental Science and Technology. 52, 3, p. 1525-1532 8 p.

Research output: Contribution to journalArticle

Pyruvate Dehydrogenase Complex
acid water
Disinfection
Glyceraldehyde-3-Phosphate Dehydrogenases
Pyruvic Acid

Heritability of agronomic traits correlated with reduced stink bug damage in an F 2:3 soybean population derived from IAC-100

Da Fonseca Santos, M., Möller, M., Clough, S. J. & Pinheiro, J. B., Jan 2 2018, In : Journal of Crop Improvement. 32, 1, p. 1-18 18 p.

Research output: Contribution to journalArticle

Pentatomidae
heritability
filling period
Soybeans
agronomic traits

High-density linkage mapping of vitamin E content in maize grain

Fenton, M. E., Owens, B. F., Lipka, A. E., Ortiz, D., Tiede, T., Mateos-Hernandez, M., Ferruzzi, M. G. & Rocheford, T., Mar 1 2018, In : Molecular Breeding. 38, 3, 31.

Research output: Contribution to journalArticle

Chromosome Mapping
Vitamin E
Zea mays
chromosome mapping
vitamin E

High-fidelity detection of crop biomass quantitative trait loci from low-cost imaging in the field

Banan, D., Paul, R. E., Feldman, M. J., Holmes, M. W., Schlake, H., Baxter, I., Jiang, H. & Leakey, A., Feb 1 2018, In : Plant Direct. 2, 2, e00041.

Research output: Contribution to journalArticle

Open Access
Quantitative Trait Loci
Biomass
Crops
biomass production
quantitative trait loci

High-throughput, microscale protocol for the analysis of processing parameters and nutritional qualities in Maize (Zea mays L.)

Butts-Wilmsmeyer, C., Yana, N. A., Kandhola, G., Rausch, K. D., Mumm, R. H. & Bohn, M. O., Jun 18 2018, In : Journal of Visualized Experiments. 2018, 136, e57809.

Research output: Contribution to journalArticle

Nutritive Value
Zea mays
Throughput
Processing
Processed foods

Hybrid selection and agronomic management to lessen the continuous corn yield penalty

Vogel, A. M. & Below, F. E., Oct 16 2018, In : Agronomy. 8, 10, 228.

Research output: Contribution to journalArticle

corn
soybeans
nitrogen fertilizers
plant cultural practices
pesticide application
Amaranthus
single nucleotide polymorphism
internal transcribed spacers
Amaranthus tuberculatus
National Center for Biotechnology Information

Identification of missing variants by combining multiple analytic pipelines

Ren, Y., Reddy, J. S., Pottier, C., Sarangi, V., Tian, S., Sinnwell, J. P., McDonnell, S. K., Biernacka, J. M., Carrasquillo, M. M., Ross, O. A., Ertekin-Taner, N., Rademakers, R., Hudson, M., Mainzer, L. S. & Asmann, Y. W., Apr 16 2018, In : BMC bioinformatics. 19, 1, 139.

Research output: Contribution to journalArticle

Sample Size
Pipelines
Gene Frequency
Alzheimer Disease
Sequencing

Identification of quantitative trait loci for goss’s wilt of maize

Cooper, J. S., Balint-Kurti, P. J. & Jamann, T. M., May 1 2018, In : Crop Science. 58, 3, p. 1192-1200 9 p.

Research output: Contribution to journalArticle

quantitative trait loci
leaf blight
corn
Setosphaeria turcica
leaf spot

Identifying barriers and motivators for adoption of multifunctional perennial cropping systems by landowners in the Upper Sangamon River Watershed, Illinois

Mattia, C. M., Lovell, S. T. & Davis, A., Oct 1 2018, In : Agroforestry Systems. 92, 5, p. 1155-1169 15 p.

Research output: Contribution to journalArticle

landowners
landowner
cropping systems
cropping practice
watershed

Identifying marginal land for Multifunctional Perennial Cropping Systems in the Upper Sangamon River watershed, Illinois

Mattia, C., Lovell, S. T. & Fraterrigo, J. M., Nov 1 2018, In : Journal of Soil and Water Conservation. 73, 6, p. 669-681 13 p.

Research output: Contribution to journalArticle

landowners
landowner
cropping systems
cropping practice
watershed

Immobility in the sedentary plant-parasitic nematode H. glycines is associated with remodeling of neuromuscular tissue

Han, Z., Thapa, S., Reuter-Carlson, U., Reed, H., Gates, M., Lambert, K. N. & Schroeder, N. E., Aug 2018, In : PLoS pathogens. 14, 8, e1007198.

Research output: Contribution to journalArticle

Glycine
Muscular Atrophy
Tylenchoidea
GABAergic Neurons
Molting

Increasing drought and diminishing benefits of elevated carbon dioxide for soybean yields across the US Midwest

Jin, Z., Ainsworth, E., Leakey, A. & Lobell, D. B., Feb 1 2018, In : Global change biology. 24, 2, p. e522-e533

Research output: Contribution to journalArticle

Drought
Carbon Dioxide
Transpiration
soybean
carbon dioxide

Increasing yield stability and input efficiencies with cost-effective mechanization in Nepal

Park, A. G., McDonald, A. J., Devkota, M. & Davis, A., Nov 1 2018, In : Field Crops Research. 228, p. 93-101 9 p.

Research output: Contribution to journalArticle

mechanization
Nepal
seed
cost
farming systems

Inpactor, integrated and parallel analyzer and classifier of LTR retrotransposons and ITS application for pineapple LTR retrotransposons diversity and dynamics

Orozco-Arias, S., Liu, J., Tabares-Soto, R., Ceballos, D., Domingues, D. S., Garavito, A., Ming, R. R. & Guyot, R., Jan 1 2018, In : Biology. 7, 2, 32.

Research output: Contribution to journalArticle

Ananas
Retroelements
terminal repeat sequences
Terminal Repeat Sequences
retrotransposons
cassava
ground penetrating radar
Radar
plots
radar data

Integration of multiple stimuli-sensing systems to regulate HrpS and type III secretion system in Erwinia amylovora

Lee, J. H. & Zhao, Y., Feb 1 2018, In : Molecular Genetics and Genomics. 293, 1, p. 187-196 10 p.

Research output: Contribution to journalArticle

Erwinia amylovora
Gene Expression
Integration Host Factors
Genes
Virulence

Integration of sudden death syndrome resistance loci in the soybean genome

Chang, H. X., Roth, M. G., Wang, D., Cianzio, S. R., Lightfoot, D. A., Hartman, G. L. & Chilvers, M. I., Apr 1 2018, In : Theoretical and Applied Genetics. 131, 4, p. 757-773 17 p.

Research output: Contribution to journalReview article

Sudden Death
Soybeans
Genome
soybeans
death

Interplay Between Amphetamine and Activity Level in Gene Networks of the Mouse Striatum

Goncalves, T. M., Southey, B. R. & Rodriguez-Zas, S. L., Dec 1 2018, In : Bioinformatics and Biology Insights. 12

Research output: Contribution to journalArticle

Gene Networks
Gene Regulatory Networks
Amphetamine
Mouse
Genes

Leaf stable carbon isotope composition reflects transpiration efficiency in Zea mays

Twohey, R. J., Roberts, L. M. & Studer, A. J., Jan 1 2018, (Accepted/In press) In : Plant Journal.

Research output: Contribution to journalArticle

Carbon Isotopes
Zea mays
transpiration
isotopes
Water

Limited fitness costs of herbicide-resistance traits in Amaranthus tuberculatus facilitate resistance evolution

Wu, C., Davis, A. & Tranel, P. J., Jan 1 2018, In : Pest Management Science. 74, 2, p. 293-301 9 p.

Research output: Contribution to journalArticle

Amaranthus tuberculatus
herbicide resistance
herbicides
glyphosate
protoporphyrinogen oxidase

Long-term crop rotation and tillage effects on soil greenhouse gas emissions and crop production in Illinois, USA

Behnke, G. D., Zuber, S. M., Pittelkow, C. M., Nafziger, E. D. & Villamil, M. B., Jul 1 2018, In : Agriculture, Ecosystems and Environment. 261, p. 62-70 9 p.

Research output: Contribution to journalArticle

soil gas
crop rotation
greenhouse gas emissions
crop production
tillage
Protease La
Erwinia amylovora
type III secretion system
virulence
Virulence

Loss-of-function mutations in the dpp and opp permeases render erwinia amylovora resistant to kasugamycin and blasticidin S

Ge, Y., Lee, J. H., Hu, B. & Zhao, Y., Aug 2018, In : Molecular Plant-Microbe Interactions. 31, 8, p. 823-832 10 p.

Research output: Contribution to journalArticle

blasticidin S
Erwinia amylovora
Membrane Transport Proteins
oligopeptides
dipeptides

Maize Genomes to Fields: 2014 and 2015 field season genotype, phenotype, environment, and inbred ear image datasets

Alkhalifah, N., Campbell, D. A., Falcon, C. M., Gardiner, J. M., Miller, N. D., Romay, M. C., Walls, R., Walton, R., Yeh, C. T., Bohn, M. O., Bubert, J., Buckler, E. S., Ciampitti, I., Flint-Garcia, S., Gore, M. A., Graham, C., Hirsch, C., Holland, J. B., Hooker, D., Kaeppler, S. & 24 others, Knoll, J., Lauter, N., Lee, E. C., Lorenz, A., Lynch, J. P., Moose, S. P., Murray, S. C., Nelson, R., Rocheford, T., Rodriguez, O., Schnable, J. C., Scully, B., Smith, M., Springer, N., Thomison, P., Tuinstra, M., Wisser, R. J., Xu, W., Ertl, D., Schnable, P. S., De Leon, N., Spalding, E. P., Edwards, J. & Lawrence-Dill, C. J., Jul 9 2018, In : BMC Research Notes. 11, 1, 452.

Research output: Contribution to journalArticle

Zea mays
Ear
Genes
Genotype
Genome

MAP kinases associate with high molecular weight multiprotein complexes

Bequette, C. J., Hind, S. R., Pulliam, S., Higgins, R. & Stratmann, J. W., Jan 23 2018, In : Journal of experimental botany. 69, 3, p. 643-654 12 p.

Research output: Contribution to journalArticle

multiprotein complexes
Multiprotein Complexes
Mitogen-Activated Protein Kinases
mitogen-activated protein kinase
Phosphotransferases

Mapping of new quantitative trait loci for sudden death syndrome and soybean cyst nematode resistance in two soybean populations

Swaminathan, S., Abeysekara, N. S., Knight, J. M., Liu, M., Dong, J., Hudson, M., Bhattacharyya, M. K. & Cianzio, S. R., May 1 2018, In : Theoretical and Applied Genetics. 131, 5, p. 1047-1062 16 p.

Research output: Contribution to journalArticle

Heterodera glycines
Quantitative Trait Loci
Sudden Death
Soybeans
Cysts

Metabolic pathway of topramezone in multiple-resistant waterhemp (Amaranthus tuberculatus) differs from naturally tolerant maize

Lygin, A. V., Kaundun, S. S., Morris, J. A., Mcindoe, E., Hamilton, A. R. & Riechers, D. E., Jan 1 2018, In : Frontiers in Plant Science. 871, 1644.

Research output: Contribution to journalArticle

Metabolites
Herbicides
Metabolism
Hydroxylation
Benzoic acid

Metabolism of 2,4-dichlorophenoxyacetic acid contributes to resistance in a common waterhemp (Amaranthus tuberculatus) population

Figueiredo, M. R. A., Leibhart, L. J., Reicher, Z. J., Tranel, P. J., Nissen, S. J., Westra, P., Bernards, M. L., Kruger, G. R., Gaines, T. A. & Jugulam, M., Oct 2018, In : Pest Management Science. 74, 10, p. 2356-2362 7 p.

Research output: Contribution to journalArticle

Amaranthus tuberculatus
2,4-D
metabolism
malathion
cytochrome P-450
Electric network analysis
Metabolites
Arabidopsis
Cold-Shock Response
Activity Cycles

Methodological recommendations for optimizing assays of enzyme activities in soil samples

Margenot, A. J., Nakayama, Y. & Parikh, S. J., Jan 1 2018, (Accepted/In press) In : Soil Biology and Biochemistry.

Research output: Contribution to journalArticle

nitrophenols
Enzyme Assays
enzyme activity
Soil
soil sampling

Mosquito microbiota cluster by host sampling location

Muturi, E. J., Lagos-Kutz, D., Dunlap, C., Ramirez, J. L., Rooney, A. P., Hartman, G. L., Fields, C. J., Rendon, G. & Kim, C-H., Aug 14 2018, In : Parasites and Vectors. 11, 1, 468.

Research output: Contribution to journalArticle

Microbiota
Culicidae
Mosquito Control
Proteobacteria
Actinobacteria