Research Output 1975 2020

2019

Warm-Season Grass Monocultures and Mixtures for Sustainable Bioenergy Feedstock Production in the Midwest, USA

Lee, M. S., Mitchell, R., Heaton, E., Zumpf, C. & Lee, D. K., Mar 15 2019, In : Bioenergy Research. 12, 1, p. 43-54 12 p.

Research output: Contribution to journalArticle

warm season grasses
renewable energy sources
feedstocks
Feedstocks
Biomass

Water Use Efficiency as a Constraint and Target for Improving the Resilience and Productivity of C 3 and C 4 Crops

Leakey, A., Ferguson, J. N., Pignon, C. P., Wu, A., Jin, Z., Hammer, G. L. & Lobell, D. B., Apr 2019, In : Annual Review of Plant Biology. 70, p. 781-808 28 p.

Research output: Contribution to journalReview article

water use efficiency
Water
crops
Photosynthesis
photosynthesis

Weather during key growth stages explains grain quality and yield of maize

Butts-Wilmsmeyer, C. J., Seebauer, J. R., Singleton, L. & Below, F. E., Jan 2 2019, In : Agronomy. 9, 1, 16.

Research output: Contribution to journalArticle

weather
grain yield
developmental stages
corn
flowering

Whole-genome resequencing identifies quantitative trait loci associated with mycorrhizal colonization of soybean

Pawlowski, M. L., Vuong, T. D., Valliyodan, B., Nguyen, H. T. & Hartman, G. L., Jan 1 2019, (Accepted/In press) In : Theoretical and Applied Genetics.

Research output: Contribution to journalArticle

Quantitative Trait Loci
Soybeans
quantitative trait loci
Genome
soybeans

Winter hardiness of Miscanthus (I): Overwintering ability and yield of new Miscanthus ×giganteus genotypes in Illinois and Arkansas

Dong, H., Green, S. V., Nishiwaki, A., Yamada, T., Stewart, J. R., Deuter, M. & Sacks, E. J., May 2019, In : GCB Bioenergy. 11, 5, p. 691-705 15 p.

Research output: Contribution to journalArticle

Miscanthus giganteus
winter hardiness
Miscanthus
overwintering
Biomass

Winter hardiness of Miscanthus (II): Genetic mapping for overwintering ability and adaptation traits in three interconnected Miscanthus populations

Dong, H., Liu, S., Clark, L. V., Sharma, S., Gifford, J. M., Juvik, J. A., Lipka, A. E. & Sacks, E. J., May 2019, In : GCB Bioenergy. 11, 5, p. 706-726 21 p.

Research output: Contribution to journalArticle

winter hardiness
Miscanthus
overwintering
chromosome mapping
winter

Winter hardiness of Miscanthus (III): Genome-wide association and genomic prediction for overwintering ability in Miscanthus sinensis

Dong, H., Clark, L. V., Lipka, A. E., Brummer, J. E., Głowacka, K., Hall, M. C., Heo, K., Jin, X., Peng, J., Yamada, T., Ghimire, B. K., Yoo, J. H., Yu, C. Y., Zhao, H., Long, S. P. & Sacks, E. J., Aug 2019, In : GCB Bioenergy. 11, 8, p. 930-955 26 p.

Research output: Contribution to journalArticle

Open Access
Miscanthus sinensis
winter hardiness
Miscanthus
overwintering
genomics

Yield response of field-grown soybean exposed to heat waves under current and elevated [CO2]

Thomey, M. L., Slattery, R. A., Köhler, I. H., Bernacchi, C. J. & Ort, D. R., Dec 1 2019, In : Global change biology. 25, 12, p. 4352-4368 17 p.

Research output: Contribution to journalArticle

yield response
soybean
temperature
canopy
heat wave
2018

30 years of progress toward increased biomass yield of switchgrass and big bluestem

Casler, M. D., Vogel, K. P., Lee, D. K., Mitchell, R. B., Adler, P. R., Sulc, R. M., Johnson, K. D., Kallenbach, R. L., Boe, A. R., Mathison, R. D., Cassida, K. A., Min, D. H., Crawford, J. & Moore, K. J., May 1 2018, In : Crop Science. 58, 3, p. 1242-1254 13 p.

Research output: Contribution to journalArticle

Andropogon gerardii
Panicum virgatum
biomass
ecotypes
lowlands

Above- and Belowground Prairie Cordgrass Response to Applied Nitrogen on Marginal Land

Hernández, K. A., Owens, V. N., Boe, A., González-Hernández, J. L., Lee, D. & Aberle, E., Jun 1 2018, In : Bioenergy Research. 11, 2, p. 440-448 9 p.

Research output: Contribution to journalReview article

Spartina pectinata
Biomass
Nitrogen
nitrogen
biomass production

Acibenzolar-S-methyl is associated with yield reduction when used for managing bacterial wilt (Erwinia tracheiphila) in cantaloupe

Egel, D. S., Kleczewski, N. M., Mumtaz, F. & Foster, R., Jul 2018, In : Crop Protection. 109, p. 136-141 6 p.

Research output: Contribution to journalArticle

Erwinia tracheiphila
cantaloupes
bacterial wilt
Coleoptera
cucumbers

A high-performance and in-season classification system of field-level crop types using time-series Landsat data and a machine learning approach

Cai, Y., Guan, K., Peng, J., Wang, S., Seifert, C., Wardlow, B. & Li, Z., Jun 1 2018, In : Remote Sensing of Environment. 210, p. 35-47 13 p.

Research output: Contribution to journalArticle

artificial intelligence
Landsat
Crops
Learning systems
Time series

Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.

Zhang, J., Zhang, X., Tang, H., Zhang, Q., Hua, X., Ma, X., Zhu, F., Jones, T., Zhu, X., Bowers, J., Wai, C. M., Zheng, C., Shi, Y., Chen, S., Xu, X., Yue, J., Nelson, D. R., Huang, L., Li, Z., Xu, H. & 88 others, Zhou, D., Wang, Y., Hu, W., Lin, J., Deng, Y., Pandey, N., Mancini, M., Zerpa, D., Nguyen, J. K., Wang, L., Yu, L., Xin, Y., Ge, L., Arro, J., Han, J. O., Chakrabarty, S., Pushko, M., Zhang, W., Ma, Y., Ma, P., Lv, M., Chen, F., Zheng, G., Xu, J., Yang, Z., Deng, F., Chen, X., Liao, Z., Zhang, X., Lin, Z., Lin, H., Yan, H., Kuang, Z., Zhong, W., Liang, P., Wang, G., Yuan, Y., Shi, J., Hou, J., Lin, J., Jin, J., Cao, P., Shen, Q., Jiang, Q., Zhou, P., Ma, Y., Zhang, X., Xu, R., Liu, J., Zhou, Y., Jia, H., Ma, Q., Qi, R., Zhang, Z., Fang, J., Fang, H., Song, J., Wang, M., Dong, G., Wang, G., Chen, Z., Ma, T., Liu, H., Dhungana, S. R., Huss, S. E., Yang, X., Sharma, A., Trujillo, J. H., Martinez, M. C., Hudson, M., Riascos, J. J., Schuler, M., Chen, L. Q., Braun, D. M., Li, L., Yu, Q., Wang, J., Wang, K., Schatz, M. C., Heckerman, D., Van Sluys, M. A., Souza, G. M., Moore, P. H., Sankoff, D., VanBuren, R., Paterson, A. H., Nagai, C. & Ming, R., Nov 1 2018, In : Nature Genetics. 50, 11, p. 1565-1573 9 p.

Research output: Contribution to journalArticle

Saccharum
Alleles
Genome
Chromosomes, Human, Pair 4
Disease Resistance
Organic carbon
organic soil
organic carbon
Soils
climate

An agent-based metapopulation model simulating virus-based biocontrol of Heterodera glycines

Anderson, S., Soman, C., Bekal, S., Domier, L., Lambert, K. & Bhalerao, K., Jan 1 2018, In : Journal of Nematology. 50, 2, p. 79-90 12 p.

Research output: Contribution to journalArticle

Heterodera glycines
biological control
virulence
viruses
Nematoda

Analysis of economic and social costs of growing Petunia × Hybrida in a greenhouse production system using alternative containers

Brumfield, R. G., Kenny, L. B., Devincentis, A. J., Koeser, A. K., Verlinden, S., Both, A. J., Bi, G., Lovell, S. T. & Stewart, J. R., Aug 2018, In : HortScience. 53, 8, p. 1179-1185 7 p.

Research output: Contribution to journalArticle

Petunia hybrida
greenhouse production
economic analysis
containers
production technology

An assessment of the performance of the logistic mixed model for analyzing binary traits in maize and sorghum diversity panels

Shenstone, E., Cooper, J., Rice, B., Bohn, M., Jamann, T. M. & Lipka, A. E., Nov 2018, In : PloS one. 13, 11, e0207752.

Research output: Contribution to journalArticle

Sorghum
Zea mays
Logistics
Logistic Models
Genome-Wide Association Study

An atypical N-ethylmaleimide sensitive factor enables the viability of nematode-resistant Rhg1 soybeans

Bayless, A. M., Zapotocny, R. W., Grunwald, D. J., Amundson, K. K., Diers, B. W. & Bent, A. F., May 8 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 19, p. E4512-E4521

Research output: Contribution to journalArticle

N-Ethylmaleimide-Sensitive Proteins
Soybeans
Glycine
Housekeeping
Disease Resistance

Ancestrality and mosaicism of giant viruses supporting the definition of the fourth TRUC of microbes

Colson, P., Levasseur, A., Scola, B. L., Sharma, V., Nasir, A., Pontarotti, P., Caetano-Anollés, G. & Raoult, D., Nov 27 2018, In : Frontiers in Microbiology. 9, NOV, 2668.

Research output: Contribution to journalArticle

Mosaicism
Archaea
Eukaryota
Bacteria
Genes

A novel picornavirus-like genome from transcriptome sequencing of sugar beet cyst nematode represents a new putative genus

Lin, J., Ye, R., Thekke-Veetil, T., Staton, M. E., Arelli, P. R., Bernard, E. C., Hewezi, T., Domier, L. L. & Hajimorad, M. R., Oct 2018, In : Journal of General Virology. 99, 10, p. 1418-1424 7 p., 001139.

Research output: Contribution to journalArticle

Picornaviridae
Beta vulgaris
Transcriptome
Cysts
Genome

A novel receptor-like kinase involved in fungal pathogen defence in Arabidopsis thaliana

Ray, J., Yang, X., Kong, F., Guo, T., Deng, F., Clough, S. J. & Ramonell, K., Aug 2018, In : Journal of Phytopathology. 166, 7-8, p. 506-515 10 p.

Research output: Contribution to journalArticle

Plant Immunity
Arabidopsis
phosphotransferases (kinases)
Chitin
Phosphotransferases

Archaea-First and the Co-Evolutionary Diversification of Domains of Life

Staley, J. T. & Caetano-Anolles, G., Aug 2018, In : BioEssays. 40, 8, 1800036.

Research output: Contribution to journalReview article

Archaea
Bacteria
Cells
Eukaryota
Methane

Assembly and annotation of a draft genome sequence for Glycine latifolia, a perennial wild relative of soybean

Liu, Q., Chang, S., Hartman, G. L. & Domier, L. L., Jul 2018, In : Plant Journal. 95, 1, p. 71-85 15 p.

Research output: Contribution to journalArticle

wild relatives
Soybeans
Glycine
Genome
soybeans
particulate matter
chemical composition
assay
organic carbon
fluid
soft red winter wheat
growth regulators
fungicides
production technology
lodging

Association mapping of flowering and height traits in germplasm enhancement of maize doubled haploid (GEM-DH) lines

Vanous, A., Gardner, C., Blanco, M., Martin-Schwarze, A., Lipka, A. E., Flint-Garcia, S., Bohn, M., Edwards, J. & Lübberstedt, T., Jul 2018, In : Plant Genome. 11, 2, 170083.

Research output: Contribution to journalArticle

Haploidy
doubled haploids
genetic improvement
Zea mays
chromosome mapping

BETYdb: a yield, trait, and ecosystem service database applied to second-generation bioenergy feedstock production

LeBauer, D. S., Kooper, R., Mulrooney, P., Rohde, S., Wang, D., Long, S. P. & Dietze, M. C., Jan 2018, In : GCB Bioenergy. 10, 1, p. 61-71 11 p.

Research output: Contribution to journalArticle

bioenergy
Biofuels
feedstocks
biofuels
biofuel

Beyond the nutrient strategies: Common ground to accelerate agricultural water quality improvement in the upper Midwest

Christianson, R., Christianson, L., Wong, C., Helmers, M., McIsaac, G., Mulla, D. & McDonald, M., Jan 15 2018, In : Journal of Environmental Management. 206, p. 1072-1080 9 p.

Research output: Contribution to journalArticle

Nutrients
Water quality
nutrient
Nitrogen
production system

Biochemical and transcriptomic analysis of maize diversity to elucidate drivers of leaf carbon isotope composition

Kolbe, A. R., Studer, A. J. & Cousins, A. B., Jan 1 2018, In : Functional Plant Biology. 45, 5, p. 489-500 12 p.

Research output: Contribution to journalArticle

transcriptomics
isotopes
phosphoenolpyruvate carboxylase
carbonate dehydratase
ribulose 1,5-diphosphate

Bioinformatics for prohormone and neuropeptide discovery

Southey, B. R., Romanova, E. V., Rodriguez-Zas, S. L. & Sweedler, J. V., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 71-96 26 p. (Methods in Molecular Biology; vol. 1719).

Research output: Chapter in Book/Report/Conference proceedingChapter

Computational Biology
Neuropeptides
Peptide Hormones
Post Translational Protein Processing
Proteomics

Biomass production of herbaceous energy crops in the United States: field trial results and yield potential maps from the multiyear regional feedstock partnership

Lee, D. K., Aberle, E., Anderson, E. K., Anderson, W., Baldwin, B. S., Baltensperger, D., Barrett, M., Blumenthal, J., Bonos, S., Bouton, J., Bransby, D. I., Brummer, C., Burks, P. S., Chen, C., Daly, C., Egenolf, J., Farris, R. L., Fike, J. H., Gaussoin, R., Gill, J. R. & 38 others, Gravois, K., Halbleib, M. D., Hale, A., Hanna, W., Harmoney, K., Heaton, E. A., Heiniger, R. W., Hoffman, L., Hong, C. O., Kakani, G., Kallenbach, R., Macoon, B., Medley, J. C., Missaoui, A., Mitchell, R., Moore, K. J., Morrison, J. I., Odvody, G. N., Richwine, J. D., Ogoshi, R., Parrish, J. R., Quinn, L., Richard, E., Rooney, W. L., Rushing, J. B., Schnell, R., Sousek, M., Staggenborg, S. A., Tew, T., Uehara, G., Viands, D. R., Voigt, T., Williams, D., Williams, L., Wilson, L. T., Wycislo, A., Yang, Y. & Owens, V., Oct 2018, In : GCB Bioenergy. 10, 10, p. 698-716 19 p.

Research output: Contribution to journalArticle

energy crop
energy crops
feedstocks
Feedstocks
Crops

Biorefinery for combined production of jet fuel and ethanol from lipid-producing sugarcane: a techno-economic evaluation

Kumar, D., Long, S. P. & Singh, V., Feb 1 2018, In : GCB Bioenergy. 10, 2, p. 92-107 16 p.

Research output: Contribution to journalArticle

biorefining
Jet fuel
economic analysis
Lipids
sugarcane

Brain region-dependent gene networks associated with selective breeding for increased voluntary wheel-running behavior

Zhang, P., Rhodes, J. S., Garland, T., Perez, S. D., Southey, B. R. & Rodriguez-Zas, S. L., Aug 2018, In : PloS one. 13, 8, e0201773.

Research output: Contribution to journalArticle

Gene Regulatory Networks
selection methods
wheels
Running
Brain

Canopy warming accelerates development in soybean and maize, offsetting the delay in soybean reproductive development by elevated CO2 concentrations

Ruiz-Vera, U. M., Siebers, M. H., Jaiswal, D., Ort, D. R. & Bernacchi, C. J., Dec 2018, In : Plant Cell and Environment. 41, 12, p. 2806-2820 15 p.

Research output: Contribution to journalArticle

Soybeans
Zea mays
carbon dioxide
canopy
soybeans

Carbon and nitrogen content of soil organic matter and microbial biomass under long-term crop rotation and tillage in Illinois, USA

Zuber, S. M., Behnke, G. D., Nafziger, E. D. & Villamil, M. B., Mar 2018, In : Agriculture (Switzerland). 8, 3, 37.

Research output: Contribution to journalArticle

Biomass
nitrogen content
microbial biomass
tillage
soil organic matter

Carbonic anhydrase mutants in zea mays have altered stomatal responses to environmental signals

Kolbe, A. R., Brutnell, T. P., Cousins, A. B. & Studer, A. J., Jun 2018, In : Plant physiology. 177, 3, p. 980-989 10 p.

Research output: Contribution to journalArticle

Carbonic Anhydrases
carbonate dehydratase
Zea mays
Photosynthesis
mutants

Cellulosic ethanol potential of feedstocks grown on marginal lands

Kim, S. M., Lee, D., Thapa, S., Dien, B. S., Tumbleson, M. E., Rausch, K. D. & Singh, V., Jan 1 2018, In : Transactions of the ASABE. 61, 6, p. 1775-1782 8 p.

Research output: Contribution to journalArticle

Cellulosic ethanol
Ashes
Panicum
bioethanol
feedstocks

Changes in Corn Protein Content During Storage and Their Relationship with Dry Grind Ethanol Production

Ramchandran, D., Hojilla-Evangelista, M. P., Moose, S. P., Rausch, K. D., Tumbleson, M. E. & Singh, V., Jan 1 2018, (Accepted/In press) In : JAOCS, Journal of the American Oil Chemists' Society.

Research output: Contribution to journalArticle

Ethanol
Proteins
Prolamins
Glutens
Fermentation

Changes in Phenolic Acid Content in Maize during Food Product Processing

Butts-Wilmsmeyer, C. J., Mumm, R. H., Rausch, K. D., Kandhola, G., Yana, N. A., Happ, M. M., Ostezan, A., Wasmund, M. & Bohn, M. O., Apr 4 2018, In : Journal of Agricultural and Food Chemistry. 66, 13, p. 3378-3385 8 p.

Research output: Contribution to journalArticle

Food processing
Food Handling
phenolic acids
Zea mays
foods

Characteristics of xanthomonas cucurbitae isolates from pumpkins and survival of the bacterium in pumpkin seeds

Zhang, X. & Babadoost, M., Sep 2018, In : Plant disease. 102, 9, p. 1779-1784 6 p.

Research output: Contribution to journalArticle

Xanthomonas cucurbitae
pumpkins
bacteria
lesions (plant)
seeds

Chlorophyll can be reduced in crop canopies with little penalty to photosynthesis

Walker, B. J., Drewry, D. T., Slattery, R. A., VanLoocke, A., Cho, Y. B. & Ort, D. R., Feb 2018, In : Plant physiology. 176, 2, p. 1215-1232 18 p.

Research output: Contribution to journalArticle

Photosynthesis
Chlorophyll
photosynthesis
canopy
chlorophyll

Chlorotyrosines versus Volatile Byproducts from Chlorine Disinfection during Washing of Spinach and Lettuce

Komaki, Y., Simpson, A. M. A., Choe, J. K., Plewa, M. J. & Mitch, W. A., Aug 21 2018, In : Environmental Science and Technology. 52, 16, p. 9361-9369 9 p.

Research output: Contribution to journalArticle

Disinfection
Chlorine
Washing
disinfection
Byproducts

Chromosome Nomenclature and Cytological Characterization of Sacred Lotus

Meng, Z., Hu, X., Zhang, Z., Li, Z., Lin, Q., Yang, M., Yang, P., Ming, R. R., Yu, Q. & Wang, K., Mar 1 2018, In : Cytogenetic and Genome Research. 153, 4, p. 223-231 9 p.

Research output: Contribution to journalArticle

Nelumbo
Terminology
China
Chromosomes
Cytogenetics

Comparative analysis of homologous sequences of saccharum officinarum and saccharum spontaneum reveals independent polyploidization events

Sharma, A., Song, J., Lin, Q., Singh, R., Ramos, N., Wang, K., Zhang, J., Ming, R. & Yu, Q., Sep 25 2018, In : Frontiers in Plant Science. 9, 1414.

Research output: Contribution to journalArticle

Saccharum spontaneum
Saccharum officinarum
sequence homology
Saccharum
bacterial artificial chromosomes

Comparison of chemical, color stability, and phenolic composition from pericarp of nine colored corn unique varieties in a beverage model

Haggard, S., Luna-Vital, D., West, L., Juvik, J. A., Chatham, L., Paulsmeyer, M. & Gonzalez de Mejia, E., Mar 2018, In : Food Research International. 105, p. 286-297 12 p.

Research output: Contribution to journalArticle

Beverages
pericarp
beverages
Zea mays
Color

Comparison of the mitochondrial genome sequences of six Annulohypoxylon stygium isolates suggests short fragment insertions as a potential factor leading to larger genomic size

Deng, Y., Hsiang, T., Li, S., Lin, L., Wang, Q., Chen, Q., Xie, B. & Ming, R., Sep 10 2018, In : Frontiers in Microbiology. 9, SEP, 2079.

Research output: Contribution to journalArticle

Mitochondrial Genome
Introns
Intergenic DNA
Genes
Genome

Confronting herbicide resistance with cooperative management

Evans, J. A., Williams, A., Hager, A. G., Mirsky, S. B., Tranel, P. J. & Davis, A. S., Nov 2018, In : Pest Management Science. 74, 11, p. 2424-2431 8 p.

Research output: Contribution to journalArticle

Amaranthus tuberculatus
collaborative management
herbicide resistance
glyphosate
herbicides

Consensus, uncertainties and challenges for perennial bioenergy crops and land use

Whitaker, J., Field, J. L., Bernacchi, C. J., Cerri, C. E. P., Ceulemans, R., Davies, C. A., DeLucia, E. H., Donnison, I. S., McCalmont, J. P., Paustian, K., Rowe, R. L., Smith, P., Thornley, P. & McNamara, N. P., Mar 2018, In : GCB Bioenergy. 10, 3, p. 150-164 15 p.

Research output: Contribution to journalReview article

energy crops
bioenergy
Land use
Crops
Greenhouse gases

Conversion of grazed pastures to energy cane as a biofuel feedstock alters the emission of GHGs from soils in Southeastern United States

Gomez-Casanovas, N., DeLucia, N. J., Hudiburg, T. W., Bernacchi, C. & Delucia, E. H., Jan 2018, In : Biomass and Bioenergy. 108, p. 312-322 11 p.

Research output: Contribution to journalArticle

Biofuels
canes
Southeastern United States
feedstocks
biofuels

Copper oxide nanoparticle effects on root growth and hydraulic conductivity of two vegetable crops

Margenot, A. J., Rippner, D. A., Dumlao, M. R., Nezami, S., Green, P. G., Parikh, S. J. & McElrone, A. J., Oct 1 2018, In : Plant and Soil. 431, 1-2, p. 333-345 13 p.

Research output: Contribution to journalArticle

nanoparticles
vegetable crops
hydraulic conductivity
vegetable
oxides