Research Output

2019

Reply to: Brazilian ethanol expansion subject to limitations

Jaiswal, D., De Souza, A. P., Larsen, S., LeBauer, D. S., Miguez, F. E., Sparovek, G., Bollero, G. A., Buckeridge, M. S. & Long, S. P., Mar 1 2019, In : Nature Climate Change. 9, 3, p. 211-212 2 p.

Research output: Contribution to journalLetter

Residue and agronomic management to reduce the continuous corn yield penalty

Vogel, A. M. & Below, F. E., Sep 20 2019, In : Agronomy. 9, 10, 567.

Research output: Contribution to journalArticle

Open Access

Saccharum × Miscanthus intergeneric hybrids (miscanes) exhibit greater chilling tolerance of C4 photosynthesis and postchilling recovery than sugarcane (Saccharum spp. hybrids)

Kar, S., Zhang, N., Nakashima, T., Villanueva-Morales, A., Stewart, J. R., Sacks, E. J., Terajima, Y. & Yamada, T., Nov 1 2019, In : GCB Bioenergy. 11, 11, p. 1318-1333 16 p.

Research output: Contribution to journalArticle

Open Access

SentIeon DNaSeq variant calling workflow demonstrates strong computational performance and accuracy

Kendig, K. I., Baheti, S., Bockol, M. A., Drucker, T. M., Hart, S. N., Heldenbrand, J. R., Hernaez, M., Hudson, M. E., Kalmbach, M. T., Klee, E. W., Mattson, N. R., Ross, C. A., Taschuk, M., Wieben, E. D., Wiepert, M., Wildman, D. E. & Mainzer, L. S., Jan 1 2019, In : Frontiers in Genetics. 10, JUL, 736.

Research output: Contribution to journalArticle

Open Access

Siberian Miscanthus sacchariflorus accessions surpass the exceptional chilling tolerance of the most widely cultivated clone of Miscanthus x giganteus

Pignon, C. P., Spitz, I., Sacks, E. J., Jørgensen, U., Kørup, K. & Long, S. P., Jul 2019, In : GCB Bioenergy. 11, 7, p. 883-894 12 p.

Research output: Contribution to journalArticle

Open Access

Simulated responses of tile-drained agricultural systems to recent changes in ambient atmospheric gradients

Jeong, H., Pittelkow, C. M. & Bhattarai, R., Jan 2019, In : Agricultural Systems. 168, p. 48-55 8 p.

Research output: Contribution to journalArticle

Site-specific treatment responses in on-farm precision experimentation

Trevisan, R. G., Bullock, D. S. & Martin, N. F., Jan 1 2019, Precision Agriculture 2019 - Papers Presented at the 12th European Conference on Precision Agriculture, ECPA 2019. Stafford, J. V. (ed.). Wageningen Academic Publishers, p. 925-931 7 p. (Precision Agriculture 2019 - Papers Presented at the 12th European Conference on Precision Agriculture, ECPA 2019).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Stability analysis of kernel quality traits in exotic-derived doubled haploid maize lines

Vanous, A., Gardner, C., Blanco, M., Martin-Schwarze, A., Wang, J., Li, X., Lipka, A. E., Flint-Garcia, S., Bohn, M., Edwards, J. & Lubberstedt, T., Mar 2019, In : Plant Genome. 12, 1, 170114.

Research output: Contribution to journalArticle

Open Access

Sugar production from bioenergy sorghum by using pilot scale continuous hydrothermal pretreatment combined with disk refining

Cheng, M. H., Dien, B. S., Lee, D. K. & Singh, V., Oct 2019, In : Bioresource Technology. 289, 121663.

Research output: Contribution to journalArticle

Survey of glyphosate-, atrazine- and lactofen-resistance mechanisms in Ohio waterhemp (Amaranthus tuberculatus) populations

Murphy, B. P., Larran, A. S., Ackley, B., Loux, M. M. & Tranel, P. J., May 1 2019, In : Weed Science. 67, 3, p. 296-302 7 p.

Research output: Contribution to journalArticle

Target enrichment sequencing of 307 germplasm accessions identified ancestry of ancient and modern hybrids and signatures of adaptation and selection in sugarcane (Saccharum spp.), a ‘sweet’ crop with ‘bitter’ genomes

Yang, X., Song, J., Todd, J., Peng, Z., Paudel, D., Luo, Z., Ma, X., You, Q., Hanson, E., Zhao, Z., Zhao, Y., Zhang, J., Ming, R. & Wang, J., Feb 1 2019, In : Plant Biotechnology Journal. 17, 2, p. 488-498 11 p.

Research output: Contribution to journalArticle

Target-site mutations conferring herbicide resistance

Murphy, B. P. & Tranel, P. J., Oct 2019, In : Plants. 8, 10, 382.

Research output: Contribution to journalArticle

Open Access

Taxonomy of the order Mononegavirales: second update 2018

Maes, P., Amarasinghe, G. K., Ayllón, M. A., Basler, C. F., Bavari, S., Blasdell, K. R., Briese, T., Brown, P. A., Bukreyev, A., Balkema-Buschmann, A., Buchholz, U. J., Chandran, K., Crozier, I., de Swart, R. L., Dietzgen, R. G., Dolnik, O., Domier, L. L., Drexler, J. F., Dürrwald, R., Dundon, W. G. & 57 others, Duprex, W. P., Dye, J. M., Easton, A. J., Fooks, A. R., Formenty, P. B. H., Fouchier, R. A. M., Freitas-Astúa, J., Ghedin, E., Griffiths, A., Hewson, R., Horie, M., Hurwitz, J. L., Hyndman, T. H., Jiāng, D., Kobinger, G. P., Kondō, H., Kurath, G., Kuzmin, I. V., Lamb, R. A., Lee, B., Leroy, E. M., Lǐ, J., Marzano, S. Y. L., Mühlberger, E., Netesov, S. V., Nowotny, N., Palacios, G., Pályi, B., Pawęska, J. T., Payne, S. L., Rima, B. K., Rota, P., Rubbenstroth, D., Simmonds, P., Smither, S. J., Song, Q., Song, T., Spann, K., Stenglein, M. D., Stone, D. M., Takada, A., Tesh, R. B., Tomonaga, K., Tordo, N., Towner, J. S., van den Hoogen, B., Vasilakis, N., Wahl, V., Walker, P. J., Wang, D., Wang, L. F., Whitfield, A. E., Williams, J. V., Yè, G., Zerbini, F. M., Zhang, Y. Z. & Kuhn, J. H., Apr 3 2019, In : Archives of Virology. 164, 4, p. 1233-1244 12 p.

Research output: Contribution to journalArticle

Open Access

The bracteatus pineapple genome and domestication of clonally propagated crops

Chen, L. Y., VanBuren, R., Paris, M., Zhou, H., Zhang, X., Wai, C. M., Yan, H., Chen, S., Alonge, M., Ramakrishnan, S., Liao, Z., Liu, J., Lin, J., Yue, J., Fatima, M., Lin, Z., Zhang, J., Huang, L., Wang, H., Hwa, T. Y. & 25 others, Kao, S. M., Choi, J. Y., Sharma, A., Song, J., Wang, L., Yim, W. C., Cushman, J. C., Paull, R. E., Matsumoto, T., Qin, Y., Wu, Q., Wang, J., Yu, Q., Wu, J., Zhang, S., Boches, P., Tung, C. W., Wang, M. L., Coppens d’Eeckenbrugge, G., Sanewski, G. M., Purugganan, M. D., Schatz, M. C., Bennetzen, J. L., Lexer, C. & Ming, R., Oct 1 2019, In : Nature Genetics. 51, 10, p. 1549-1558 10 p.

Research output: Contribution to journalArticle

Open Access

The Draft Genome of Kochia scoparia and the Mechanism of Glyphosate Resistance via Transposon-Mediated EPSPS Tandem Gene Duplication

Patterson, E. L., Saski, C. A., Sloan, D. B., Tranel, P. J., Westra, P. & Gaines, T. A., Oct 1 2019, In : Genome biology and evolution. 11, 10, p. 2927-2940 14 p.

Research output: Contribution to journalArticle

Open Access

The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication

Zhuang, W., Chen, H., Yang, M., Wang, J., Pandey, M. K., Zhang, C., Chang, W. C., Zhang, L., Zhang, X., Tang, R., Garg, V., Wang, X., Tang, H., Chow, C. N., Wang, J., Deng, Y., Wang, D., Khan, A. W., Yang, Q., Cai, T. & 58 others, Bajaj, P., Wu, K., Guo, B., Zhang, X., Li, J., Liang, F., Hu, J., Liao, B., Liu, S., Chitikineni, A., Yan, H., Zheng, Y., Shan, S., Liu, Q., Xie, D., Wang, Z., Khan, S. A., Ali, N., Zhao, C., Li, X., Luo, Z., Zhang, S., Zhuang, R., Peng, Z., Wang, S., Mamadou, G., Zhuang, Y., Zhao, Z., Yu, W., Xiong, F., Quan, W., Yuan, M., Li, Y., Zou, H., Xia, H., Zha, L., Fan, J., Yu, J., Xie, W., Yuan, J., Chen, K., Zhao, S., Chu, W., Chen, Y., Sun, P., Meng, F., Zhuo, T., Zhao, Y., Li, C., He, G., Zhao, Y., Wang, C., Kavikishor, P. B., Pan, R. L., Paterson, A. H., Wang, X., Ming, R. & Varshney, R. K., May 1 2019, In : Nature Genetics. 51, 5, p. 865-876 12 p.

Research output: Contribution to journalArticle

Open Access

The MANAGE Drain Concentration database: A new tool compiling North American drainage nutrient concentrations

Hertzberger, A., Pittelkow, C. M., Harmel, R. D. & Christianson, L. E., May 1 2019, In : Agricultural Water Management. 216, p. 113-117 5 p.

Research output: Contribution to journalArticle

Open Access

The papaya genome project: Fruitful insights, a decade later

Nguyen, J. K. & Ming, R., Jan 1 2019, In : Acta Horticulturae. 1250, p. 111-121 11 p.

Research output: Contribution to journalArticle

The RNA-binding protein CsrA controls virulence in Erwinia amylovora by regulating relA, RcsB, and FlhD at the posttranscriptional level

Lee, J. H., Ancona, V., Chatnaparat, T., Yang, H. W. & Zhao, Y., Oct 2019, In : Molecular Plant-Microbe Interactions. 32, 10, p. 1448-1459 12 p.

Research output: Contribution to journalArticle

Toward a Regional Phosphorus (Re)cycle in the US Midwest

Margenot, A. J., Kitt, D., Gramig, B., Berkshire, T. B., Chatterjee, N., Hertzberger, A. J., Aguiar, S., Furneaux, A., Sharma, N. & Cusick, R., Jan 1 2019, In : Journal of Environmental Quality. 48, 5, p. 1397-1413 17 p.

Research output: Contribution to journalArticle

Trichothecene-producing fusarium species isolated from soybean roots in Ethiopia and Ghana and their pathogenicity on soybean

Hartman, G. L., McCormick, S. P. & O’donnell, K., Aug 2019, In : Plant disease. 103, 8, p. 2070-2075 6 p.

Research output: Contribution to journalArticle

Uncovering hidden genetic variation in photosynthesis of field-grown maize under ozone pollution

Choquette, N. E., Ogut, F., Wertin, T. M., Montes, C. M., Sorgini, C. A., Morse, A. M., Brown, P. J., Leakey, A. D. B., Mcintyre, L. M. & Ainsworth, E. A., Oct 1 2019, In : Global change biology. 25, 12, p. 4327-4338

Research output: Contribution to journalArticle

Open Access

Unmanned aerial vehicle-based assessment of cover crop biomass and nitrogen uptake variability

Yuan, M., Burjel, J. C., Isermann, J., Goeser, N. J. & Pittelkow, C. M., Jan 1 2019, In : Journal of Soil and Water Conservation. 74, 4, p. 350-359 10 p.

Research output: Contribution to journalArticle

Open Access

Winter hardiness of Miscanthus (I): Overwintering ability and yield of new Miscanthus ×giganteus genotypes in Illinois and Arkansas

Dong, H., Green, S. V., Nishiwaki, A., Yamada, T., Stewart, J. R., Deuter, M. & Sacks, E. J., May 2019, In : GCB Bioenergy. 11, 5, p. 691-705 15 p.

Research output: Contribution to journalArticle

Winter hardiness of Miscanthus (II): Genetic mapping for overwintering ability and adaptation traits in three interconnected Miscanthus populations

Dong, H., Liu, S., Clark, L. V., Sharma, S., Gifford, J. M., Juvik, J. A., Lipka, A. E. & Sacks, E. J., May 2019, In : GCB Bioenergy. 11, 5, p. 706-726 21 p.

Research output: Contribution to journalArticle

Winter hardiness of Miscanthus (III): Genome-wide association and genomic prediction for overwintering ability in Miscanthus sinensis

Dong, H., Clark, L. V., Lipka, A. E., Brummer, J. E., Głowacka, K., Hall, M. C., Heo, K., Jin, X., Peng, J., Yamada, T., Ghimire, B. K., Yoo, J. H., Yu, C. Y., Zhao, H., Long, S. P. & Sacks, E. J., Aug 2019, In : GCB Bioenergy. 11, 8, p. 930-955 26 p.

Research output: Contribution to journalArticle

Open Access
2018

30 years of progress toward increased biomass yield of switchgrass and big bluestem

Casler, M. D., Vogel, K. P., Lee, D. K., Mitchell, R. B., Adler, P. R., Sulc, R. M., Johnson, K. D., Kallenbach, R. L., Boe, A. R., Mathison, R. D., Cassida, K. A., Min, D. H., Crawford, J. & Moore, K. J., May 1 2018, In : Crop Science. 58, 3, p. 1242-1254 13 p.

Research output: Contribution to journalArticle

Acibenzolar-S-methyl is associated with yield reduction when used for managing bacterial wilt (Erwinia tracheiphila) in cantaloupe

Egel, D. S., Kleczewski, N. M., Mumtaz, F. & Foster, R., Jul 2018, In : Crop Protection. 109, p. 136-141 6 p.

Research output: Contribution to journalArticle

A high-performance and in-season classification system of field-level crop types using time-series Landsat data and a machine learning approach

Cai, Y., Guan, K., Peng, J., Wang, S., Seifert, C., Wardlow, B. & Li, Z., Jun 1 2018, In : Remote Sensing of Environment. 210, p. 35-47 13 p.

Research output: Contribution to journalArticle

Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.

Zhang, J., Zhang, X., Tang, H., Zhang, Q., Hua, X., Ma, X., Zhu, F., Jones, T., Zhu, X., Bowers, J., Wai, C. M., Zheng, C., Shi, Y., Chen, S., Xu, X., Yue, J., Nelson, D. R., Huang, L., Li, Z., Xu, H. & 88 others, Zhou, D., Wang, Y., Hu, W., Lin, J., Deng, Y., Pandey, N., Mancini, M., Zerpa, D., Nguyen, J. K., Wang, L., Yu, L., Xin, Y., Ge, L., Arro, J., Han, J. O., Chakrabarty, S., Pushko, M., Zhang, W., Ma, Y., Ma, P., Lv, M., Chen, F., Zheng, G., Xu, J., Yang, Z., Deng, F., Chen, X., Liao, Z., Zhang, X., Lin, Z., Lin, H., Yan, H., Kuang, Z., Zhong, W., Liang, P., Wang, G., Yuan, Y., Shi, J., Hou, J., Lin, J., Jin, J., Cao, P., Shen, Q., Jiang, Q., Zhou, P., Ma, Y., Zhang, X., Xu, R., Liu, J., Zhou, Y., Jia, H., Ma, Q., Qi, R., Zhang, Z., Fang, J., Fang, H., Song, J., Wang, M., Dong, G., Wang, G., Chen, Z., Ma, T., Liu, H., Dhungana, S. R., Huss, S. E., Yang, X., Sharma, A., Trujillo, J. H., Martinez, M. C., Hudson, M., Riascos, J. J., Schuler, M., Chen, L. Q., Braun, D. M., Li, L., Yu, Q., Wang, J., Wang, K., Schatz, M. C., Heckerman, D., Van Sluys, M. A., Souza, G. M., Moore, P. H., Sankoff, D., VanBuren, R., Paterson, A. H., Nagai, C. & Ming, R., Nov 1 2018, In : Nature Genetics. 50, 11, p. 1565-1573 9 p.

Research output: Contribution to journalArticle

An agent-based metapopulation model simulating virus-based biocontrol of Heterodera glycines

Anderson, S., Soman, C., Bekal, S., Domier, L., Lambert, K. & Bhalerao, K., Jan 1 2018, In : Journal of Nematology. 50, 2, p. 79-90 12 p.

Research output: Contribution to journalArticle

Analysis of economic and social costs of growing Petunia × Hybrida in a greenhouse production system using alternative containers

Brumfield, R. G., Kenny, L. B., Devincentis, A. J., Koeser, A. K., Verlinden, S., Both, A. J., Bi, G., Lovell, S. T. & Stewart, J. R., Aug 2018, In : HortScience. 53, 8, p. 1179-1185 7 p.

Research output: Contribution to journalArticle

An atypical N-ethylmaleimide sensitive factor enables the viability of nematode-resistant Rhg1 soybeans

Bayless, A. M., Zapotocny, R. W., Grunwald, D. J., Amundson, K. K., Diers, B. W. & Bent, A. F., May 8 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 19, p. E4512-E4521

Research output: Contribution to journalArticle

Ancestrality and mosaicism of giant viruses supporting the definition of the fourth TRUC of microbes

Colson, P., Levasseur, A., Scola, B. L., Sharma, V., Nasir, A., Pontarotti, P., Caetano-Anollés, G. & Raoult, D., Nov 27 2018, In : Frontiers in Microbiology. 9, NOV, 2668.

Research output: Contribution to journalArticle

An ecological perspective on managing weeds during the great selection for herbicide resistance

Bagavathiannan, M. V. & Davis, A. S., Oct 2018, In : Pest Management Science. 74, 10, p. 2277-2286 10 p.

Research output: Contribution to journalReview article