Research Output

2019

Insights from transcriptome profiling on the non-photosynthetic and stomatal signaling response of maize carbonic anhydrase mutants to low CO2

Kolbe, A. R., Studer, A. J., Cornejo, O. E. & Cousins, A. B., Feb 15 2019, In : BMC genomics. 20, 1, 138.

Research output: Contribution to journalArticle

Integrated effects of genetic resistance and prothioconazole + tebuconazole application timing on fusarium head blight in wheat

Paul, P. A., Salgado, J. D., Bergstrom, G., Bradley, C. A., Byamukama, E., Byrne, A. M., Chapara, V., Cummings, J. A., Chilvers, M. I., Dill-Macky, R., Friskop, A., Kleczewski, N., Madden, L. V., Nagelkirk, M., Stevens, J., Smith, M., Wegulo, S. N., Wise, K. & Yabwalo, D., Feb 1 2019, In : Plant disease. 103, 2, p. 223-237 15 p.

Research output: Contribution to journalArticle

Interspecific variation in crop and weed responses to arbuscular mycorrhizal fungal community highlights opportunities for weed biocontrol

Li, M., Jordan, N. R., Koide, R. T., Yannarell, A. C. & Davis, A. S., Oct 2019, In : Applied Soil Ecology. 142, p. 34-42 9 p.

Research output: Contribution to journalArticle

In vivo evidence for a regulatory role of phosphorylation of Arabidopsis Rubisco activase at the Thr78 site

Kim, S. Y., Harvey, C. M., Giese, J., Lassowskat, I., Singh, V., Cavanagh, A. P., Spalding, M. H., Finkemeier, I., Ort, D. R. & Huber, S. C., Sep 10 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 37, p. 18723-18731 9 p.

Research output: Contribution to journalArticle

Open Access

Jersey steer ruminal papillae histology and nutrigenomics with diet changes

Novak, T. E., Rodriguez-Zas, S. L., Southey, B. R., Starkey, J. D., Stockler, R. M., Alfaro, G. F. & Moisá, S. J., Nov 1 2019, In : Journal of Animal Physiology and Animal Nutrition. 103, 6, p. 1694-1707 14 p.

Research output: Contribution to journalArticle

Open Access

Karyotype variations among date palm (Phoenix dactylifera L.) cultivars of Sindh, Pakistan

Jatt, T., Markhand, G. S., Rayburn, L., Ming, R., Jatoi, M. A. & Mirbahar, A. A., Jan 1 2019, In : Sarhad Journal of Agriculture. 35, 3, p. 708-718 11 p.

Research output: Contribution to journalArticle

Open Access

Knowledge, attitudes, and perceived barriers towards genetic testing across three rural Illinois communities

Fogleman, A. J., Zahnd, W. E., Lipka, A. E., Malhi, R. S., Ganai, S., Delfino, K. R. & Jenkins, W. D., Jul 4 2019, In : Journal of Community Genetics. 10, 3, p. 417-423 7 p.

Research output: Contribution to journalArticle

Landscape and local site variables differentially influence pollinators and pollination services in urban agricultural sites

Bennett, A. B. & Lovell, S., Feb 2019, In : PloS one. 14, 2, e0212034.

Research output: Contribution to journalArticle

Open Access

Length of poly(A) tail affects transcript infectivity of three ZYMV symptom variants differing at only five amino acid positions

Kim, B., Cho, I. S., Kim, I. H., Choi, G. W., Ju, H. K., Hu, W. X., Oh, J. P., Kim, J. K., Seo, E., Domier, L. L., Hammond, J. & Lim, H. S., Nov 1 2019, In : Journal of Plant Pathology. 101, 4, p. 1187-1193 7 p.

Research output: Contribution to journalArticle

Long-term efficacy of annual bluegrass control strategies on golf course putting greens

Patton, A. J., Braun, R. C., Schortgen, G. P., Weisenberger, D. V., Branham, B. E., Sharp, B., Sousek, M. D., Gaussoin, R. E. & Reicher, Z. J., Sep 1 2019, In : Crop, Forage and Turfgrass Management. 5, 1, 180068.

Research output: Contribution to journalArticle

Long-term N fertilization decreased diversity and altered the composition of soil bacterial and archaeal communities

Sun, R., Zhang, P., Riggins, C. W., Zabaloy, M. C., Rodriguez-Zas, S. L. & Villamil, M. B., Sep 23 2019, In : Agronomy. 9, 10, 574.

Research output: Contribution to journalArticle

Open Access

Long-term N fertilization imbalances potential N acquisition and transformations by soil microbes

Huang, L., Riggins, C. W., Rodríguez-Zas, S., Zabaloy, M. C. & Villamil, M. B., Nov 15 2019, In : Science of the Total Environment. 691, p. 562-571 10 p.

Research output: Contribution to journalArticle

Open Access

Mai1 protein acts between host recognition of pathogen effectors and mitogen-activated protein kinase signaling

Roberts, R., Hind, S. R., Pedley, K. F., Diner, B. A., Szarzanowicz, M. J., Luciano-Rosario, D., Majhi, B. B., Popov, G., Sessa, G., Oh, C. S. & Martin, G. B., Jan 1 2019, In : Molecular Plant-Microbe Interactions. 32, 11, p. 1498-1507 10 p.

Research output: Contribution to journalArticle

Maizegdb 2018: The maize multi-genome genetics and genomics database

Portwood, J. L., Woodhouse, M. R., Cannon, E. K., Gardiner, J. M., Harper, L. C., Schaeffer, M. L., Walsh, J. R., Sen, T. Z., Cho, K. T., Schott, D. A., Braun, B. L., Dietze, M., Dunfee, B., Elsik, C. G., Manchanda, N., Coe, E., Sachs, M., Stinard, P., Tolbert, J., Zimmerman, S. & 1 others, Andorf, C. M., Jan 8 2019, In : Nucleic acids research. 47, D1, p. D1146-D1154

Research output: Contribution to journalArticle

MANET 3.0: Hierarchy and modularity in evolving metabolic networks

Mughal, F. & Caetano-Anollés, G., Oct 24 2019, In : PloS one. 14, 10, e0224201.

Research output: Contribution to journalArticle

Open Access

Markov chain Monte Carlo simulation of a Bayesian mixture model for gene network inference

Ko, Y., Kim, J. & Rodriguez-Zas, S. L., May 1 2019, In : Genes and Genomics. 41, 5, p. 547-555 9 p.

Research output: Contribution to journalArticle

Metabolite and transcript profiling of Guinea grass (Panicum maximum Jacq) response to elevated [CO 2 ] and temperature

Wedow, J. M., Yendrek, C. R., Mello, T. R., Creste, S., Martinez, C. A. & Ainsworth, E. A., Apr 1 2019, In : Metabolomics. 15, 4, 51.

Research output: Contribution to journalArticle

Open Access

Mitochondrial genome in Hypsizygus marmoreus and its evolution in Dikarya

Wang, G., Lin, J., Shi, Y., Chang, X., Wang, Y., Guo, L., Wang, W., Dou, M., Deng, Y., Ming, R. & Zhang, J., Oct 22 2019, In : BMC genomics. 20, 1, 765.

Research output: Contribution to journalArticle

Open Access

Multienvironment and multitrait genomic selection models in unbalanced early-generation wheat yield trials

Ward, B. P., Brown-Guedira, G., Tyagi, P., Kolb, F. L., van Sanford, D. A., Sneller, C. H. & Griffey, C. A., Mar 1 2019, In : Crop Science. 59, 2, p. 491-507 17 p.

Research output: Contribution to journalArticle

Open Access

Multiple modes of convergent adaptation in the spread of glyphosate-resistant Amaranthus tuberculatus

Kreiner, J. M., Giacomini, D. A., Bemm, F., Waithaka, B., Regalado, J., Lanz, C., Hildebrandt, J., Sikkema, P. H., Tranel, P. J., Weigel, D., Stinchcombe, J. R. & Wright, S. I., Oct 15 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 42, p. 21076-21084 9 p.

Research output: Contribution to journalArticle

Open Access

Multivariate genomic selection and potential of rapid indirect selection with speed breeding in spring wheat

Watson, A., Hickey, L. T., Christopher, J., Rutkoski, J., Poland, J. & Hayes, B. J., Sep 1 2019, In : Crop Science. 59, 5, p. 1945-1959 15 p.

Research output: Contribution to journalArticle

New grain P and K concentration values for Illinois field crops

Villamil, M. B., Nafziger, E. D. & Behnke, G. D., Sep 1 2019, In : Crop, Forage and Turfgrass Management. 5, 1, 180090.

Research output: Contribution to journalArticle

Nitrogen Demand Associated with Increased Biomass Yield of Switchgrass and Big Bluestem: Implications for Future Breeding Strategies

Casler, M. D., Lee, D. K., Mitchell, R. B., Adler, P. R., Sulc, R. M., Johnson, K. D., Kallenbach, R. L., Boe, A. R., Mathison, R. D., Cassida, K. A., Min, D. & Moore, K. J., Jan 1 2019, (Accepted/In press) In : Bioenergy Research.

Research output: Contribution to journalArticle

Nitrogen provisioned and recycled by cover crops in monoculture and mixture across two organic farms

Holmes, A. A., Thompson, A. A., Lovell, S. T., Villamil, M. B., Yannarell, A. C., Dawson, J. O. & Wortman, S. E., Dec 1 2019, In : Nutrient Cycling in Agroecosystems. 115, 3, p. 441-453 13 p.

Research output: Contribution to journalArticle

Nonallelic homologous recombination events responsible for copy number variation within an RNA silencing locus

Cho, Y. B., Jones, S. I. & Vodkin, L. O., Jan 1 2019, In : Plant Direct. 3, 8, e00162.

Research output: Contribution to journalArticle

Open Access

Nutritional evaluation of 3 types of novel ethanol coproducts

Corray, S., Utterback, P., Ramchandran, D., Singh, V., Moose, S. P. & Parsons, C. M., Jul 1 2019, In : Poultry science. 98, 7, p. 2933-2939 7 p.

Research output: Contribution to journalArticle

Opioid-Induced Hyperalgesia Is Associated with Dysregulation of Circadian Rhythm and Adaptive Immune Pathways in the Mouse Trigeminal Ganglia and Nucleus Accumbens

Zhang, P., Moye, L. S., Southey, B. R., Dripps, I., Sweedler, J. V., Pradhan, A. & Rodriguez-Zas, S. L., Dec 1 2019, In : Molecular Neurobiology. 56, 12, p. 7929-7949 21 p.

Research output: Contribution to journalArticle

Papaya CpbHLH1/2 regulate carotenoid biosynthesis-related genes during papaya fruit ripening

Zhou, D., Shen, Y., Zhou, P., Fatima, M., Lin, J., Yue, J., Zhang, X., Chen, L. Y. & Ming, R., Dec 1 2019, In : Horticulture Research. 6, 1, 80.

Research output: Contribution to journalArticle

Open Access

Papaya sex chromosome evolution and domestication

Zerpa-Catanho, D. P. & Ming, R., Jan 1 2019, In : Acta Horticulturae. 1250, p. 129-137 9 p.

Research output: Contribution to journalArticle

Pathotypes Detected Among Populations of Pratylenchus neglectus Collected From Montana

Al-Khafaji, R. T., Gunnink Troth, E. E., Lambert, K. N., Johnston, J. A. & Dyer, A. T., Dec 1 2019, In : Plant disease. 103, 12, p. 3259-3264 6 p.

Research output: Contribution to journalArticle

Patterns of Genome-Wide Variation, Population Differentiation and SNP Discovery of the Red Banded Stink Bug (Piezodorus guildinii)

Zucchi, M. I., Cordeiro, E. M. G., Allen, C., Novello, M., Viana, J. P. G., Brown, P. J., Manjunatha, S., Omoto, C., Pinheiro, J. B. & Clough, S. J., Dec 1 2019, In : Scientific reports. 9, 1, 14480.

Research output: Contribution to journalArticle

Open Access

Perspective: Understanding the Intersection of Climate/Environmental Change, Health, Agriculture, and Improved Nutrition - A Case Study: Type 2 Diabetes

Finley, J., Jaacks, L. M., Peters, C. J., Ort, D. R., Aimone, A. M., Conrad, Z. & Raiten, D. J., Sep 1 2019, In : Advances in Nutrition. 10, 5, p. 731-738 8 p.

Research output: Contribution to journalReview article

Open Access

Phenotyping photosynthesis on the limit - a critical examination of RACiR

Taylor, S. H. & Long, S. P., Jan 1 2019, In : The New phytologist. 221, 2, p. 621-624 4 p.

Research output: Contribution to journalLetter

Open Access

Physical exertion exacerbates decline in the musculature of an animal model of Duchenne muscular dystrophy

Hughes, K. J., Rodriguez, A., Flatt, K. M., Ray, S., Schuler, A., Rodemoyer, B., Veerappan, V., Cuciarone, K., Kullman, A., Lim, C., Gutta, N., Vemuri, S., Andriulis, V., Niswonger, D., Barickman, L., Stein, W., Singhvi, A., Schroeder, N. E. & Vidal-Gadea, A. G., Feb 26 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 9, p. 3508-3517 10 p.

Research output: Contribution to journalArticle

Plant and soil microfaunal biodiversity across the borders between arable and forest ecosystems in a Mediterranean landscape

Jackson, L. E., Bowles, T. M., Ferris, H., Margenot, A. J., Hollander, A., Garcia-Palacios, P., Daufresne, T. & Sánchez-Moreno, S., Apr 2019, In : Applied Soil Ecology. 136, p. 122-138 17 p.

Research output: Contribution to journalArticle

Planting depth and seed size affect edamame emergence individually

Crawford, L. E. & Williams, M. M., Jan 2019, In : HortScience. 54, 1, p. 92-94 3 p.

Research output: Contribution to journalArticle

Poly(lactic-co-glycolic acid) Nanoparticles Loaded with Callistemon citrinus Phenolics Exhibited Anticancer Properties against Three Breast Cancer Cell Lines

Ahmed, R., Tariq, M., Ahmad, I. S., Fouly, H., Fakhar-I-Abbas, Hasan, A. & Kushad, M., Jun 1 2019, In : Journal of Food Quality. 2019, 2638481.

Research output: Contribution to journalArticle

Open Access

polyRAD: Genotype calling with uncertainty from sequencing data in polyploids and diploids

Clark, L. V., Lipka, A. E. & Sacks, E. J., Mar 1 2019, In : G3: Genes, Genomes, Genetics. 9, 3, p. 663-673 11 p.

Research output: Contribution to journalArticle

Open Access

Population genomics of the neotropical brown stink bug, euschistus heros: The most important emerging insect pest to soybean in brazil

Zucchi, M. I., Cordeiro, E. M. G., Wu, X., Lamana, L. M., Brown, P. J., Manjunatha, S., Viana, J. P. G., Omoto, C., Pinheiro, J. B. & Clough, S. J., Jan 1 2019, In : Frontiers in Genetics. 10, OCT, 1035.

Research output: Contribution to journalArticle

Open Access

Population structure of Miscanthus sacchariflorus reveals two major polyploidization events, tetraploid-mediated unidirectional introgression from diploid M. sinensis, and diversity centred around the Yellow Sea

Clark, L. V., Jin, X., Petersen, K. K., Anzoua, K. G., Bagmet, L., Chebukin, P., Deuter, M., Dzyubenko, E., Dzyubenko, N., Heo, K., Johnson, D. A., Jørgensen, U., Kjeldsen, J. B., Nagano, H., Peng, J., Sabitov, A., Yamada, T., Yoo, J. H., Yu, C. Y., Long, S. P. & 1 others, Sacks, E. J., Oct 29 2019, In : Annals of botany. 124, 4, p. 731-748 18 p.

Research output: Contribution to journalArticle

Open Access

Positional cloning and characterization of the papaya diminutive mutant reveal a truncating mutation in the CpMMS19 gene

Wang, Y., Singh, R., Tong, E., Tang, M., Zheng, L., Fang, H., Li, R., Guo, L., Song, J., Srinivasan, R., Sharma, A., Lin, L., Trujillo, J. A., Manshardt, R., Chen, L. Y., Ming, R. & Yu, Q., Jan 1 2019, (Accepted/In press) In : New Phytologist.

Research output: Contribution to journalArticle

Predicting light-induced stomatal movements based on the redox state of plastoquinone: theory and validation

Kromdijk, J., Głowacka, K. & Long, S. P., Jul 1 2019, In : Photosynthesis research. 141, 1, p. 83-97 15 p.

Research output: Contribution to journalArticle

Prediction of N 2 O emissions under different field management practices and climate conditions

Foltz, M. E., Zilles, J. L. & Koloutsou-Vakakis, S., Jan 1 2019, In : Science of the Total Environment. 646, p. 872-879 8 p.

Research output: Contribution to journalArticle

Predominant N-Haloacetamide and Haloacetonitrile Formation in Drinking Water via the Aldehyde Reaction Pathway

Vu, T. N., Kimura, S. Y., Plewa, M. J., Richardson, S. D. & Marinas, B. J., Jan 15 2019, In : Environmental Science and Technology. 53, 2, p. 850-859 10 p.

Research output: Contribution to journalArticle

Prospects for economical natural colorants: insights from maize

Chatham, L. A., Paulsmeyer, M. & Juvik, J. A., Nov 1 2019, In : Theoretical and Applied Genetics. 132, 11, p. 2927-2946 20 p.

Research output: Contribution to journalReview article

Recent polyploidization events in three Saccharum founding species

Zhang, J., Zhang, Q., Li, L., Tang, H., Zhang, Q., Chen, Y., Arrow, J., Zhang, X., Wang, A., Miao, C. & Ming, R., Jan 2019, In : Plant Biotechnology Journal. 17, 1, p. 264-274 11 p.

Research output: Contribution to journalArticle

Recent warming has resulted in smaller gains in net carbon uptake in northern high latitudes

Zhu, P., Zhuang, Q., Welp, L., Ciais, P., Heimann, M., Peng, B., Li, W., Bernacchi, C., Roedenbeck, C. & Keenan, T. F., Sep 1 2019, In : Journal of Climate. 32, 18, p. 5849-5863 15 p.

Research output: Contribution to journalArticle

Recommendations for performance optimizations when using GATK3.8 and GATK4

Heldenbrand, J. R., Baheti, S., Bockol, M. A., Drucker, T. M., Hart, S. N., Hudson, M. E., Iyer, R. K., Kalmbach, M. T., Kendig, K. I., Klee, E. W., Mattson, N. R., Wieben, E. D., Wiepert, M., Wildman, D. E. & Mainzer, L. S., Nov 8 2019, In : BMC bioinformatics. 20, 1, 557.

Research output: Contribution to journalArticle

Open Access

Registration of ‘erisman’ soft red winter wheat

Krill, A. M., Smith, N. J., Handal, E. A. & Kolb, F. L., Jan 2019, In : Journal of Plant Registrations. 13, 1, p. 58-62 5 p.

Research output: Contribution to journalArticle

Relationship between invasive brown marmorated stink bug (halyomorpha halys) and fumonisin contamination of field corn in the Mid-Atlantic U.S

Opoku, J., Kleczewski, N. M., Hamby, K. A., Herbert, D. A., Malone, S. & Mehl, H. L., Jun 2019, In : Plant disease. 103, 6, p. 1189-1195 7 p.

Research output: Contribution to journalArticle