Research Output 1975 2020

2019

Genetic diversity, population structure and key phenotypic traits driving variation within soyabean (Glycine max) collection in Ghana

Denwar, N. N., Awuku, F. J., Diers, B. W., Addae-Frimpomaah, F., Chigeza, G., Oteng-Frimpong, R., Puozaa, D. K. & Barnor, M. T., Oct 1 2019, In : Plant Breeding. 138, 5, p. 577-587 11 p.

Research output: Contribution to journalArticle

Ghana
Soybeans
Glycine max
population structure
principal component analysis

Genetic strategies for improving crop yields

Bailey-Serres, J., Parker, J. E., Ainsworth, E. A., Oldroyd, G. E. D. & Schroeder, J. I., Nov 7 2019, In : Nature. 575, 7781, p. 109-118 10 p.

Research output: Contribution to journalReview article

Open Access
Infrared Rays
Weather
Agriculture
Climate
Population

Genome-Wide analysis and prediction of resistance to goss’s wilt in maize

Cooper, J. S., Rice, B. R., Shenstone, E. M., Lipka, A. E. & Jamann, T. M., Jun 2019, In : Plant Genome. 12, 2, 180045.

Research output: Contribution to journalArticle

Open Access
Zea mays
Genome
genome
prediction
corn

Genome-Wide Analysis of Nitrate Transporter (NRT/NPF) Family in Sugarcane Saccharum spontaneum L.

Wang, J., Li, Y., Zhu, F., Ming, R. R. & Chen, L., Sep 1 2019, In : Tropical Plant Biology. 12, 3, p. 133-149 17 p.

Research output: Contribution to journalArticle

Saccharum spontaneum
Saccharum
sugarcane
transporters
nitrates

Genome-wide analysis of the MYB-CC gene family of maize

Bai, J., Sun, F., Wang, M., Su, L., Li, R. & Caetano-Anolles, G., Feb 15 2019, In : Genetica. 147, 1

Research output: Contribution to journalArticle

Zea mays
Genome
genome
corn
Genes

Genome-wide association and genomic prediction for biomass yield in a genetically diverse Miscanthus sinensis germplasm panel phenotyped at five locations in Asia and North America

Clark, L. V., Dwiyanti, M. S., Anzoua, K. G., Brummer, J. E., Ghimire, B. K., Głowacka, K., Hall, M., Heo, K., Jin, X., Lipka, A. E., Peng, J., Yamada, T., Yoo, J. H., Yu, C. Y., Zhao, H., Long, S. P. & Sacks, E. J., Aug 2019, In : GCB Bioenergy. 11, 8, p. 988-1007 20 p.

Research output: Contribution to journalArticle

Open Access
Miscanthus sinensis
germplasm
Nucleotides
Polymorphism
single nucleotide polymorphism
Heterodera glycines
Polymorphism
Soybeans
Single Nucleotide Polymorphism
Cysts

Genome-wide association studies for yield-related traits in soft red winter wheat grown in Virginia

Ward, B. P., Brown-Guedira, G., Kolb, F. L., Van Sanford, D. A., Tyagi, P., Sneller, C. H. & Griffey, C. A., Feb 2019, In : PloS one. 14, 2, e0208217.

Research output: Contribution to journalArticle

Open Access
soft red winter wheat
Genome-Wide Association Study
Triticum
Genes
kinship

Genome wide association study identifies novel single nucleotide polymorphic loci and candidate genes involved in soybean sudden death syndrome resistance

Swaminathan, S., Das, A., Assefa, T., Knight, J. M., Da Silva, A. F., Carvalho, J. P. S., Hartman, G. L., Huang, X., Leandro, L. F., Cianzio, S. R. & Bhattacharyya, M. K., Feb 2019, In : PloS one. 14, 2, e0212071.

Research output: Contribution to journalArticle

Open Access
Genome-Wide Association Study
Sudden Death
Soybeans
Nucleotides
Genes
Soybean mosaic virus
Mosaic Viruses
Genome-Wide Association Study
Soybeans
Seeds

Genome-Wide Identification and Characterization of the Vacuolar H+-ATPase Subunit H Gene Family in Crop Plants

Kang, C., Sun, F., Caetano-Anollés, G., Yan, L., Li, R. & Bai, J., Oct 16 2019, In : International Journal of Molecular Sciences. 20, 20, 5125.

Research output: Contribution to journalArticle

Open Access
Vacuolar Proton-Translocating ATPases
genome
crops
genes
Crops

Genomic and Allelic Analyses of Laccase Genes in Sugarcane (Saccharum spontaneum L.)

Zhang, W., Lin, J., Dong, F., Ma, Q., Wu, S., Ma, X., Fatima, M., Jia, H. & Ming, R., Sep 1 2019, In : Tropical Plant Biology. 12, 3, p. 219-229 11 p.

Research output: Contribution to journalArticle

Saccharum spontaneum
Laccase
Saccharum
laccase
sugarcane

Genomic selection using maize ex-plant variety protection germplasm for the prediction of nitrogen-use traits

Mastrodomenico, A. T., Bohn, M. O., Lipka, A. E. & Below, F. E., Jan 1 2019, In : Crop Science. 59, 1, p. 212-220 9 p.

Research output: Contribution to journalArticle

plant variety protection
marker-assisted selection
germplasm
prediction
corn
Podosphaera
Cucurbitaceae
powdery mildew
genotyping
virulence

Germplasm Development of Underutilized Temperate U.S. Tree Crops

Revord, R., Lovell, S. T., Molnar, T., Wolz, K. J. & Mattia, C., Mar 14 2019, In : Sustainability. 11, 6, 20 p., 1546.

Research output: Contribution to journalReview article

Open Access
germplasm
Crops
crop
breeding
agroforestry
Ananas
Crassulacean acid metabolism
Aquaporins
Boron
aquaporins

Healthy Planet, Healthy Youth: A Food Systems Education and Promotion Intervention to Improve Adolescent Diet Quality and Reduce Food Waste

Prescott, M. P., Burg, X., Metcalfe, J. J., Lipka, A. E., Herritt, C. & Cunningham-sabo, L., Aug 11 2019, In : Nutrients. 11, 8, 1869.

Research output: Contribution to journalArticle

Open Access
Planets
Food Quality
food waste
nutritional adequacy
education
Betaine-Homocysteine S-Methyltransferase
betaine-homocysteine S-methyltransferase
5-Methyltetrahydrofolate-Homocysteine S-Methyltransferase
methionine synthase
choline

Herbicide Metabolism: Crop Selectivity, Bioactivation, Weed Resistance, and Regulation

Nandula, V. K., Riechers, D. E., Ferhatoglu, Y., Barrett, M., Duke, S. O., Dayan, F. E., Goldberg-Cavalleri, A., Tétard-Jones, C., Wortley, D. J., Onkokesung, N., Brazier-Hicks, M., Edwards, R., Gaines, T., Iwakami, S., Jugulam, M. & Ma, R., Mar 1 2019, In : Weed Science. 67, 2, p. 149-175 27 p.

Research output: Contribution to journalArticle

herbicides
weeds
resistance mechanisms
metabolism
crops

High-throughput field phenotyping using hyperspectral reflectance and partial least squares regression (PLSR) reveals genetic modifications to photosynthetic capacity

Meacham-Hensold, K., Montes, C. M., Wu, J., Guan, K., Fu, P., Ainsworth, E. A., Pederson, T., Moore, C. E., Brown, K. L., Raines, C. & Bernacchi, C. J., Sep 15 2019, In : Remote Sensing of Environment. 231, 111176.

Research output: Contribution to journalArticle

Open Access
genetic engineering
reflectance
least squares
Throughput
phenotype

Homologues of the RNA binding protein RsmA in Pseudomonas syringae pv. tomato DC3000 exhibit distinct binding affinities with non-coding small RNAs and have distinct roles in virulence

Ge, Y., Lee, J. H., Liu, J., Yang, H. W., Tian, Y., Hu, B. & Zhao, Y., Jan 1 2019, In : Molecular Plant Pathology. 20, 9, p. 1217-1236 20 p.

Research output: Contribution to journalArticle

Open Access
Pseudomonas syringae
Pseudomonas syringae pv. tomato
Small Untranslated RNA
RNA-binding proteins
RNA-Binding Proteins

Horizontal gene transfer in human-associated microorganisms inferred by phylogenetic reconstruction and reconciliation

Jeong, H., Arif, B., Caetano-Anolles, G., Kim, K. M. & Nasir, A., Dec 1 2019, In : Scientific reports. 9, 1, 5953.

Research output: Contribution to journalArticle

Open Access
Horizontal Gene Transfer
Microbiota
Human Body
Human Genome
Genes

Host-derived gene silencing of parasite fitness genes improves resistance to soybean cyst nematodes in stable transgenic soybean

Tian, B., Li, J., Vodkin, L. O., Todd, T. C., Finer, J. J. & Trick, H. N., Sep 1 2019, In : Theoretical and Applied Genetics. 132, 9, p. 2651-2662 12 p.

Research output: Contribution to journalArticle

Open Access
Heterodera glycines
Gene Silencing
gene silencing
Soybeans
Cysts

Human metallo-β-lactamase enzymes degrade penicillin

Diene, S. M., Pinault, L., Keshri, V., Armstrong, N., Khelaifia, S., Chabrière, E., Caetano-Anolles, G., Colson, P., La Scola, B., Rolain, J. M., Pontarotti, P. & Raoult, D., Dec 1 2019, In : Scientific reports. 9, 1, 12173.

Research output: Contribution to journalArticle

Open Access
Lactams
Penicillins
Sulbactam
Enzymes
Anti-Bacterial Agents
Open Access
hydroponics
Liquefaction
liquefaction
Wastewater
wastewater
Open Access
artificial intelligence
reflectance
least squares
operator regions
leaves

Identification and characterization of a novel stay-green QTL that increases yield in maize

Zhang, J., Fengler, K. A., Van Hemert, J. L., Gupta, R., Mongar, N., Sun, J., Allen, W. B., Wang, Y., Weers, B., Mo, H., Lafitte, R., Hou, Z., Bryant, A., Ibraheem, F., Arp, J., Swaminathan, K., Moose, S. P., Li, B. & Shen, B., Dec 1 2019, In : Plant Biotechnology Journal. 17, 12, p. 2272-2285 14 p.

Research output: Contribution to journalArticle

Open Access
RNA Interference
Zea mays
quantitative trait loci
Biomass
corn

Identification and Expression Analysis of TCP Genes in Saccharum spontaneum L

Lin, J., Zhu, M., Cai, M., Zhang, W., Fatima, M., Jia, H., Li, F. & Ming, R., Sep 1 2019, In : Tropical Plant Biology. 12, 3, p. 206-218 13 p.

Research output: Contribution to journalArticle

Saccharum spontaneum
Saccharum
sugarcane
Sorghum (Poaceae)
Genes

Impact of chlorine exposure time on disinfection byproduct formation in the presence of iopamidol and natural organic matter during chloramination

Ackerson, N. O. B., Killinger, A. H., Liberatore, H. K., Ternes, T. A., Plewa, M. J., Richardson, S. D. & Duirk, S. E., Apr 2019, In : Journal of environmental sciences (China). 78, p. 204-214 11 p.

Research output: Contribution to journalArticle

Iopamidol
Disinfection
Chlorine
disinfection
Biological materials

Impact of warm-season grass management on feedstock production on marginal farmland in Central Illinois

Zumpf, C., Lee, M. S., Thapa, S., Guo, J., Mitchell, R., Volenec, J. J. & Lee, D. K., Oct 1 2019, In : GCB Bioenergy. 11, 10, p. 1202-1214 13 p.

Research output: Contribution to journalArticle

Open Access
warm season grasses
feedstocks
Feedstocks
agricultural land
grass

Implementation of the effect of urease inhibitor on ammonia emissions following urea-based fertilizer application at a Zea mays field in central Illinois: A study with SURFATM-NH 3 model

Lichiheb, N., Myles, L. T., Personne, E., Heuer, M., Buban, M., Nelson, A. J., Koloutsou-Vakakis, S., Rood, M. J., Joo, E., Miller, J. & Bernacchi, C., May 15 2019, In : Agricultural and Forest Meteorology. 269-270, p. 78-87 10 p.

Research output: Contribution to journalArticle

urease inhibitors
fertilizer application
urea
inhibitor
ammonia

Improving infrared spectroscopy characterization of soil organic matter with spectral subtractions

Margenot, A. J., Parikh, S. J. & Calderón, F. J., Jan 2019, In : Journal of Visualized Experiments. 2019, 143, e57464.

Research output: Contribution to journalArticle

Biological materials
Infrared spectroscopy
Spectrum Analysis
Soil
Soils

Improving yield mapping accuracy using remote sensing

Gonçalves Trevisan, R., Shiratsuchi, L. S., Bullock, D. S. & Martin, N. F., Jan 1 2019, Precision Agriculture 2019 - Papers Presented at the 12th European Conference on Precision Agriculture, ECPA 2019. Stafford, J. V. (ed.). Wageningen Academic Publishers, p. 901-908 8 p. (Precision Agriculture 2019 - Papers Presented at the 12th European Conference on Precision Agriculture, ECPA 2019).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

yield mapping
Project management
Farms
Spatial distribution
remote sensing

Increased temperatures may safeguard the nutritional quality of crops under future elevated CO2 concentrations

Köhler, I. H., Huber, S. C., Bernacchi, C. J. & Baxter, I. R., Mar 2019, In : Plant Journal. 97, 5, p. 872-886 15 p.

Research output: Contribution to journalArticle

Nutritive Value
nutritive value
carbon dioxide
Seeds
Temperature
endopolyploidy
herbivory
genetic variation
fitness
herbivores

Insights from transcriptome profiling on the non-photosynthetic and stomatal signaling response of maize carbonic anhydrase mutants to low CO2

Kolbe, A. R., Studer, A. J., Cornejo, O. E. & Cousins, A. B., Feb 15 2019, In : BMC genomics. 20, 1, 138.

Research output: Contribution to journalArticle

Carbonic Anhydrases
Gene Expression Profiling
Zea mays
Photosynthesis
Genes

Integrated effects of genetic resistance and prothioconazole + tebuconazole application timing on fusarium head blight in wheat

Paul, P. A., Salgado, J. D., Bergstrom, G., Bradley, C. A., Byamukama, E., Byrne, A. M., Chapara, V., Cummings, J. A., Chilvers, M. I., Dill-Macky, R., Friskop, A., Kleczewski, N., Madden, L. V., Nagelkirk, M., Stevens, J., Smith, M., Wegulo, S. N., Wise, K. & Yabwalo, D., Feb 1 2019, In : Plant disease. 103, 2, p. 223-237 15 p.

Research output: Contribution to journalArticle

tebuconazole
Fusarium head blight
application timing
genetic resistance
deoxynivalenol

Interspecific variation in crop and weed responses to arbuscular mycorrhizal fungal community highlights opportunities for weed biocontrol

Li, M., Jordan, N. R., Koide, R. T., Yannarell, A. & Davis, A., Oct 2019, In : Applied Soil Ecology. 142, p. 34-42 9 p.

Research output: Contribution to journalArticle

interspecific variation
fungal communities
Zea mays
weed
biological control

In vivo evidence for a regulatory role of phosphorylation of Arabidopsis Rubisco activase at the Thr78 site

Kim, S. Y., Harvey, C. M., Giese, J., Lassowskat, I., Singh, V., Cavanagh, A. P., Spalding, M. H., Finkemeier, I., Ort, D. R. & Huber, S. C., Sep 10 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 37, p. 18723-18731 9 p.

Research output: Contribution to journalArticle

Open Access
Ribulose-Bisphosphate Carboxylase
Tissue Plasminogen Activator
Threonine
Phosphorylation
Light

Jersey steer ruminal papillae histology and nutrigenomics with diet changes

Novak, T. E., Rodriguez-Zas, S. L., Southey, B. R., Starkey, J. D., Stockler, R. M., Alfaro, G. F. & Moisá, S. J., Nov 1 2019, In : Journal of Animal Physiology and Animal Nutrition. 103, 6, p. 1694-1707 14 p.

Research output: Contribution to journalArticle

Open Access
Nutrigenomics
nutrigenomics
Jersey
histology
Histology

Karyotype variations among date palm (Phoenix dactylifera L.) cultivars of Sindh, Pakistan

Jatt, T., Markhand, G. S., Rayburn, L., Ming, R., Jatoi, M. A. & Mirbahar, A. A., Jan 1 2019, In : Sarhad Journal of Agriculture. 35, 3, p. 708-718 11 p.

Research output: Contribution to journalArticle

Open Access
Phoenix dactylifera
Pakistan
Karyotype
karyotyping
Chromosomes

Knowledge, attitudes, and perceived barriers towards genetic testing across three rural Illinois communities

Fogleman, A. J., Zahnd, W. E., Lipka, A. E., Malhi, R. S., Ganai, S., Delfino, K. R. & Jenkins, W. D., Jul 4 2019, In : Journal of Community Genetics. 10, 3, p. 417-423 7 p.

Research output: Contribution to journalArticle

Genetic Testing
Rural Population
Computer Security
Precision Medicine
Telemedicine

Landscape and local site variables differentially influence pollinators and pollination services in urban agricultural sites

Bennett, A. B. & Lovell, S., Feb 2019, In : PloS one. 14, 2, e0212034.

Research output: Contribution to journalArticle

Open Access
Pollination
Bees
Biodiversity
pollinating insects
Apoidea

Length of poly(A) tail affects transcript infectivity of three ZYMV symptom variants differing at only five amino acid positions

Kim, B., Cho, I. S., Kim, I. H., Choi, G. W., Ju, H. K., Hu, W. X., Oh, J. P., Kim, J. K., Seo, E., Domier, L. L., Hammond, J. & Lim, H. S., Nov 1 2019, In : Journal of Plant Pathology. 101, 4, p. 1187-1193 7 p.

Research output: Contribution to journalArticle

messenger RNA
signs and symptoms (plants)
pathogenicity
clones
amino acids

Long-term efficacy of annual bluegrass control strategies on golf course putting greens

Patton, A. J., Braun, R. C., Schortgen, G. P., Weisenberger, D. V., Branham, B. E., Sharp, B., Sousek, M. D., Gaussoin, R. E. & Reicher, Z. J., Sep 1 2019, In : Crop, Forage and Turfgrass Management. 5, 1, 180068.

Research output: Contribution to journalArticle

Poa annua
golf course
golf courses
herbicide
sodium

Long-term N fertilization decreased diversity and altered the composition of soil bacterial and archaeal communities

Sun, R., Zhang, P., Riggins, C. W., Zabaloy, M. C., Rodriguez-Zas, S. L. & Villamil, M. B., Sep 23 2019, In : Agronomy. 9, 10, 574.

Research output: Contribution to journalArticle

Open Access
Synergistetes
microbial communities
Euryarchaeota
soil
Firmicutes

Long-term N fertilization imbalances potential N acquisition and transformations by soil microbes

Huang, L., Riggins, C. W., Rodríguez-Zas, S., Zabaloy, M. C. & Villamil, M. B., Nov 15 2019, In : Science of the Total Environment. 691, p. 562-571 10 p.

Research output: Contribution to journalArticle

Open Access
Nitrification
maize
Soils
Genes
Denitrification

Mai1 protein acts between host recognition of pathogen effectors and mitogen-activated protein kinase signaling

Roberts, R., Hind, S. R., Pedley, K. F., Diner, B. A., Szarzanowicz, M. J., Luciano-Rosario, D., Majhi, B. B., Popov, G., Sessa, G., Oh, C. S. & Martin, G. B., Jan 1 2019, In : Molecular Plant-Microbe Interactions. 32, 11, p. 1498-1507 10 p.

Research output: Contribution to journalArticle

Mitogen-Activated Protein Kinases
mitogen-activated protein kinase
Cell Death
apoptosis
pathogens

Maizegdb 2018: The maize multi-genome genetics and genomics database

Portwood, J. L., Woodhouse, M. R., Cannon, E. K., Gardiner, J. M., Harper, L. C., Schaeffer, M. L., Walsh, J. R., Sen, T. Z., Cho, K. T., Schott, D. A., Braun, B. L., Dietze, M., Dunfee, B., Elsik, C. G., Manchanda, N., Coe, E., Sachs, M., Stinard, P., Tolbert, J., Zimmerman, S. & 1 others, Andorf, C. M., Jan 8 2019, In : Nucleic acids research. 47, D1, p. D1146-D1154

Research output: Contribution to journalArticle

Genetic Databases
Genomics
Zea mays
Genome
Pedigree

MANET 3.0: Hierarchy and modularity in evolving metabolic networks

Mughal, F. & Caetano-Anollés, G., Oct 24 2019, In : PloS one. 14, 10, e0224201.

Research output: Contribution to journalArticle

Open Access
Metabolic Networks and Pathways
ancestry
Hierarchical systems
Enzymes
enzymes