Research Output 1975 2020

2019

Characterization of multiple herbicide-resistant waterhemp (Amaranthus tuberculatus) populations from Illinois to VLCFA-inhibiting herbicides

Strom, S. A., Gonzini, L. C., Mitsdarfer, C., Davis, A., Riechers, D. E. & Hager, A. G., Jul 1 2019, In : Weed Science. 67, 4, p. 369-379 11 p.

Research output: Contribution to journalArticle

Amaranthus tuberculatus
acetochlor
very long chain fatty acids
metolachlor
pyroxasulfone

Characterization of soybean STAY-GREEN genes in susceptibility to foliar chlorosis of sudden death syndrome

Chang, H. X., Tan, R., Hartman, G. L., Wen, Z., Sang, H., Domier, L. L., Whitham, S. A., Wang, D. & Chilvers, M. I., Jun 2019, In : Plant physiology. 180, 2, p. 711-717 7 p.

Research output: Contribution to journalArticle

Open Access
Hypochromic Anemia
chlorosis
Sudden Death
Soybeans
soybeans

Coevolution of resistance to PPO inhibitors in waterhemp (Amaranthus tuberculatus) and Palmer amaranth (Amaranthus palmeri)

Lillie, K. J., Giacomini, D. A., Green, J. D. & Tranel, P. J., Sep 1 2019, In : Weed Science. 67, 5, p. 521-526 6 p.

Research output: Contribution to journalArticle

Amaranthus tuberculatus
Amaranthus palmeri
protoporphyrinogen oxidase
coevolution
glycine (amino acid)

Combining Environmental Monitoring and Remote Sensing Technologies to Evaluate Cropping System Nitrogen Dynamics at the Field-Scale

Preza Fontes, G., Bhattarai, R., Christianson, L. E. & Pittelkow, C. M., Feb 20 2019, In : Frontiers in Sustainable Food Systems. 3, 8.

Research output: Contribution to journalArticle

Open Access
Remote Sensing Technology
environmental monitoring
Environmental Monitoring
Water Quality
nitrous oxide

Comparative Analysis of SUS Gene Family between Saccharum officinarum and Saccharum spontaneum

Shi, Y., Xu, H., Shen, Q., Lin, J., Wang, Y., Hua, X., Yao, W., Yu, Q., Ming, R. R. & Zhang, J., Sep 1 2019, In : Tropical Plant Biology. 12, 3, p. 174-185 12 p.

Research output: Contribution to journalArticle

Saccharum spontaneum
Saccharum
Saccharum officinarum
sucrose synthase
Genes

Comparative genomics revealed the gene evolution and functional divergence of magnesium transporter families in Saccharum

Wang, Y., Hua, X., Xu, J., Chen, Z., Fan, T., Zeng, Z., Wang, H., Hour, A. L., Yu, Q., Ming, R. R. & Zhang, J., Jan 24 2019, In : BMC genomics. 20, 1, 5437.

Research output: Contribution to journalArticle

Saccharum
Genomics
Magnesium
Genes
Mya

Comparative resistomic analyses of Lysobacter species with high intrinsic multidrug resistance

Yu, M. & Zhao, Y., Dec 2019, In : Journal of Global Antimicrobial Resistance. 19, p. 320-327 8 p.

Research output: Contribution to journalArticle

Lysobacter
Multiple Drug Resistance
Microbial Drug Resistance
Xanthomonas campestris
Genes

Convergent evolution of saccate body shapes in nematodes through distinct developmental mechanisms

Thapa, S., Gates, M. K., Reuter-Carlson, U., Androwski, R. J. & Schroeder, N. E., Mar 14 2019, In : EvoDevo. 10, 1, 21 p., 5.

Research output: Contribution to journalArticle

Open Access
animal morphology
convergent evolution
Heterodera glycines
body shape
Glycine

Correction: Multiple modes of convergent adaptation in the spread of glyphosate-resistant Amaranthus tuberculatus (Proceedings of the National Academy of Sciences of the United States of America (2019) 116 (21076–21084) DOI: 10.1073/pnas.1900870116)

Kreiner, J. M., Giacomini, D. A., Bemm, F., Waithaka, B., Regalado, J., Lanz, C., Hildebrandt, J., Sikkema, P. H., Tranel, P. J., Weigel, D., Stinchcombe, J. R. & Wright, S. I., Nov 12 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 46, 1 p.

Research output: Contribution to journalComment/debate

Open Access
glyphosate
Amaranthus
Genome
Databases

Correction to: Recommendations for performance optimizations when using GATK3.8 and GATK4 (BMC Bioinformatics (2019) 20 (557) DOI: 10.1186/s12859-019-3169-7)

Heldenbrand, J. R., Baheti, S., Bockol, M. A., Drucker, T. M., Hart, S. N., Hudson, M. E., Iyer, R. K., Kalmbach, M. T., Kendig, K. I., Klee, E. W., Mattson, N. R., Wieben, E. D., Wiepert, M., Wildman, D. E. & Mainzer, L. S., Dec 17 2019, In : BMC bioinformatics. 20, 1, 722.

Research output: Contribution to journalComment/debate

Open Access
Performance Optimization
Bioinformatics
Computational Biology
Publications
Recommendations

Correction to: Genome-wide analysis of the MYB-CC gene family of maize (Genetica, (2019), 147, 1, (1-9), 10.1007/s10709-018-0042-y)

Bai, J., Sun, F., Wang, M., Su, L., Li, R. & Caetano-Anolles, G., Feb 15 2019, In : Genetica. 147, 1, 1 p.

Research output: Contribution to journalComment/debate

Zea mays
Genome
genome
corn
Genes

Cover crop rotations affect greenhouse gas emissions and crop production in Illinois, USA

Behnke, G. D. & Villamil, M. B., Sep 1 2019, In : Field Crops Research. 241, 107580.

Research output: Contribution to journalArticle

cover crop
crop rotation
greenhouse gas emissions
cover crops
crop production

Deleterious mutation burden and its association with complex traits in sorghum (Sorghum bicolor)

Valluru, R., Gazave, E. E., Fernandes, S. B., Ferguson, J. N., Lozano, R., Hirannaiah, P., Zuo, T., Brown, P. J., Leakey, A. D. B., Gore, M. A., Buckler, E. S. & Bandillo, N., Mar 2019, In : Genetics. 211, 3, p. 1075-1087 13 p.

Research output: Contribution to journalArticle

Sorghum
Mutation
Biomass
Genome
Starch

Designing multifunctional woody polycultures according to landowner preferences in Central Illinois

Stanek, E. C., Lovell, S. T. & Reisner, A., Dec 1 2019, In : Agroforestry Systems. 93, 6, p. 2293-2311 19 p.

Research output: Contribution to journalArticle

polyculture
landowners
landowner
nut
crop

Determination of genome size variations among different date palm cultivars (Phoenix dactylifera L.) by flow cytometry

Jatt, T., Lee, M. S., Rayburn, A. L., Jatoi, M. A. & Mirani, A. A., Dec 1 2019, In : 3 Biotech. 9, 12, 457.

Research output: Contribution to journalArticle

Genome Size
Phoenix dactylifera
flow cytometry
cultivar
Flow Cytometry

Developing and validating a decision support tool for media selection to mitigate drainage waters

Ezzati, G., Healy, M. G., Christianson, L., Feyereisen, G. W., Thornton, S., Daly, K. & Fenton, O., Aug 2019, In : Ecological Engineering: X. 2, 100010.

Research output: Contribution to journalArticle

Open Access
drainage water
Nutrients
Drainage
nutrient
hydraulic conductivity

Development of Economic Thresholds for Sugarcane Aphid (Hemiptera: Aphididae) in Susceptible Grain Sorghum Hybrids

Gordy, J. W., Brewer, M. J., Bowling, R. D., Buntin, G. D., Seiter, N. J., Kerns, D. L., Reay-Jones, F. P. F. & Way, M. O., May 22 2019, In : Journal of economic entomology. 112, 3, p. 1251-1259 9 p.

Research output: Contribution to journalArticle

Melanaphis sacchari
economic threshold
grain sorghum
sorghum
Aphididae

Diatraea saccharalis history of colonization in the Americas. The case for human-mediated dispersal

Francischini, F. J. B., Cordeiro, E. M. G., de Campos, J. B., Alves-Pereira, A., Gomes Viana, J. P., Wu, X., Wei, W., Brown, P., Joyce, A., Murua, G., Fogliata, S., Clough, S. J. & Zucchi, M. I., Jan 1 2019, In : PloS one. 14, 7, e0220031.

Research output: Contribution to journalArticle

Open Access
Diatraea saccharalis
History
Saccharum
Genetic Structures
Genes

Differential gene expression among three sex types reveals a MALE STERILITY 1 (CpMS1) for sex differentiation in papaya

Zerpa-Catanho, D., Wai, J., Wang, M. L., Yu, LA., Nguyen, J. & Ming, R., Dec 9 2019, In : BMC Plant Biology. 19, 1, 545.

Research output: Contribution to journalArticle

Open Access
sexual development
papayas
gene expression
gender
genes

Disentangling weed diversity and weather impacts on long-term crop productivity in a wheat-legume rotation

Gonzalez-Andujar, J. L., Aguilera, M. J., Davis, A. S. & Navarrete, L., Feb 15 2019, In : Field Crops Research. 232, p. 24-29 6 p.

Research output: Contribution to journalArticle

weed
weather
legumes
wheat
weeds

Dissecting the nonlinear response of maize yield to high temperature stress with model-data integration

Zhu, P., Zhuang, Q., Archontoulis, S. V., Bernacchi, C. & Müller, C., Jul 2019, In : Global change biology. 25, 7, p. 2470-2484 15 p.

Research output: Contribution to journalArticle

Data integration
maize
Crops
crop
Temperature

Diversification and labor productivity on US permaculture farms

Ferguson, R. S. & Lovell, S. T., Aug 1 2019, In : Renewable Agriculture and Food Systems. 34, 4, p. 326-337 12 p.

Research output: Contribution to journalArticle

permaculture
labor productivity
Agriculture
farms
farming systems

Dominant, heritable resistance to stewart's wilt in maize is associated with an enhanced vascular defense response to infection with pantoea stewartii

Doblas-Lbéfiez, P., Deng, K., Vasquez, M. F., Giese, L., Cobine, P. A., Kolkman, J. M., King, H., Jamann, T. M., Balint-Kurti, P., De La Fuente, L., Nelson, R. J., MacKey, D. & Smith, L. G., Jan 1 2019, In : Molecular Plant-Microbe Interactions. 32, 12, p. 1581-1597 17 p.

Research output: Contribution to journalArticle

Open Access
Pantoea stewartii
Pantoea
Xylem
blood vessels
Zea mays

Drying-rewetting cycles affect nitrate removal rates in woodchip bioreactors

Maxwell, B. M., Birgand, F., Schipper, L. A., Christianson, L. E., Tian, S., Helmers, M. J., Williams, D. J., Chescheir, G. M. & Youssef, M. A., Jan 1 2019, In : Journal of Environmental Quality. 48, 1, p. 93-101 9 p.

Research output: Contribution to journalArticle

rewetting
Bioreactors
bioreactor
Nitrates
Drying

Economical synthesis of 14C-labeled aminolevulinic acid for specific in situ labeling of plant tetrapyrroles

Schwarz, E. M. & Ort, D. R., Nov 1 2019, In : Photosynthesis research. 142, 2, p. 241-247 7 p.

Research output: Contribution to journalArticle

Tetrapyrroles
Aminolevulinic Acid
aminolevulinic acid
Labeling
synthesis

Editorial: Plant Glutathione Transferases: Diverse, Multi-Tasking Enzymes With Yet-to-Be Discovered Functions

Csiszár, J., Hecker, A., Labrou, N. E., Schröder, P. & Riechers, D. E., Oct 18 2019, In : Frontiers in Plant Science. 10, 1304.

Research output: Contribution to journalEditorial

Open Access
catalytic activity
glutathione transferase
enzymes

Effect of Selected Biopesticides in Reducing Soybean Rust (Phakopsora pachyrhizi) Development

Twizeyimana, M. & Hartman, G. L., Sep 1 2019, In : Plant disease. 103, 9, p. 2460-2466 7 p.

Research output: Contribution to journalArticle

Phakopsora pachyrhizi
soybean rust
biopesticides
fungicides
greenhouse experimentation
Open Access
Panicum virgatum
bioenergy
ozone
nutrient content
feedstocks

Emergence of Hierarchical Modularity in Evolving Networks Uncovered by Phylogenomic Analysis

Caetano-Anollés, G., Aziz, M. F., Mughal, F., Gräter, F., Koç, I., Caetano-Anollés, K. & Caetano-Anollés, D., Jan 1 2019, In : Evolutionary Bioinformatics. 15

Research output: Contribution to journalReview article

Open Access
Metabolomics
Metabolic Networks and Pathways
Transcriptome
Proteins
protein

Empirical investigation of mutation rate for herbicide resistance

Casale, F. A., Giacomini, D. A. & Tranel, P. J., Jul 1 2019, In : Weed Science. 67, 4, p. 361-368 8 p.

Research output: Contribution to journalArticle

herbicide resistance
herbicides
mutation
mutants
acetolactate synthase

Epidermal remodeling in Caenorhabditis elegans dauers requires the nidogen domain protein DEX-1

Flatt, K. M., Beshers, C., Unal, C., Cohen, J. D., Sundaram, M. V. & Schroeder, N. E., Jan 2019, In : Genetics. 211, 1, p. 169-183 15 p.

Research output: Contribution to journalArticle

Caenorhabditis elegans
Zona Pellucida
Dendrites
Morphogenesis
Epidermis

Epithelial shaping by diverse apical extracellular matrices requires the nidogen domain protein DEX-1 in Caenorhabditis elegans

Cohen, J. D., Flatt, K. M., Schroeder, N. E. & Sundaram, M. V., Jan 2019, In : Genetics. 211, 1, p. 185-200 16 p.

Research output: Contribution to journalArticle

Zona Pellucida
Caenorhabditis elegans
Extracellular Matrix
Epithelium
Proteins

Evaluation of cover crop sensitivity to residual herbicides applied in the previous soybean [Glycine max (L.) Merr] crop

Whalen, D. M., Bish, M. D., Young, B. G., Hager, A. G., Conley, S. P., Reynolds, D. B., Steckel, L. E., Norsworthy, J. K. & Bradley, K. W., Apr 1 2019, In : Weed Technology. 33, 2, p. 312-320 9 p.

Research output: Contribution to journalArticle

fomesafen
metolachlor
cover crops
Glycine max
herbicides

Evaluation of genomic selection and marker-assisted selection in Miscanthus and energycane

Olatoye, M. O., Clark, L. V., Wang, J., Yang, X., Yamada, T., Sacks, E. J. & Lipka, A. E., Dec 1 2019, In : Molecular Breeding. 39, 12, 171.

Research output: Contribution to journalArticle

Open Access
Miscanthus
Disease Resistance
marker-assisted selection
Saccharum
genetic markers
Open Access
Sorghum
Genome-Wide Association Study
Sorghum (Poaceae)
marker-assisted selection
Zea mays

Evolution and Expression Analysis of Starch Synthase Gene Families in Saccharum spontaneum

Ma, P., Yuan, Y., Shen, Q., Jiang, Q., Hua, X., Zhang, Q., Zhang, M., Ming, R. R. & Zhang, J., Sep 1 2019, In : Tropical Plant Biology. 12, 3, p. 158-173 16 p.

Research output: Contribution to journalArticle

Starch Synthase
Saccharum spontaneum
Saccharum
starch synthase
Genes

Examining Genetic Variation in Maize Inbreds and Mapping Oxidative Stress Response QTL in B73-Mo17 Nearly Isogenic Lines

Sorgini, C. A., Barrios-Perez, I., Brown, P. J. & Ainsworth, E. A., Jul 4 2019, In : Frontiers in Sustainable Food Systems. 3, 51.

Research output: Contribution to journalArticle

Open Access
isogenic lines
Zea mays
genetic variation
quantitative trait loci
stress response

Exploring the differential mechanisms of carotenoid biosynthesis in the yellow peel and red flesh of papaya

Shen, Y. H., Yang, F. Y., Lu, B. G., Zhao, W. W., Jiang, T., Feng, L., Chen, X. J. & Ming, R., Jan 16 2019, In : BMC genomics. 20, 1, 49.

Research output: Contribution to journalArticle

Carica
Carotenoids
Biosynthetic Pathways
Fruit
Lutein

Farmer participatory research advances sustainable agriculture: Lessons from Michigan and Malawi

Snapp, S. S., Dedecker, J. & Davis, A. S., Nov 1 2019, In : Agronomy Journal. 111, 6, p. 2681-2691 11 p.

Research output: Contribution to journalArticle

Open Access
on-farm research
Malawi
infants
sustainable agriculture
field crops

Field-grown tobacco plants maintain robust growth while accumulating large quantities of a bacterial cellulase in chloroplasts

Schmidt, J. A., McGrath, J. M., Hanson, M. R., Long, S. P. & Ahner, B. A., Jul 1 2019, In : Nature Plants. 5, 7, p. 715-721 7 p.

Research output: Contribution to journalArticle

endo-1,4-beta-glucanase
tobacco
chloroplasts
recombinant proteins
proteins

Field pathogenomics of Fusarium head blight reveals pathogen transcriptome differences due to host resistance

Fall, L. A., Salazar, M. M., Drnevich, J., Holmes, J. R., Tseng, M. C., Kolb, F. L. & Mideros Mora, S. X., Jan 1 2019, In : Mycologia. 111, 4, p. 563-573 11 p.

Research output: Contribution to journalArticle

Fusarium head blight
Fusarium graminearum
Fusarium
Transcriptome
transcriptome

Field Performance of Saccharum × Miscanthus Intergeneric Hybrids (Miscanes) Under Cool Climatic Conditions of Northern Japan

Kar, S., Weng, T. Y., Nakashima, T., Villanueva-Morales, A., Stewart, J. R., Sacks, E. J., Terajima, Y. & Yamada, T., Jan 1 2019, (Accepted/In press) In : Bioenergy Research.

Research output: Contribution to journalArticle

Miscanthus
Saccharum
Chilling
sugarcane
Biomass

Field Studies on the Horizontal Transmission Potential by Voluntary and Involuntary Carriers of Helicoverpa armigera nucleopolyhedrovirus (Baculoviridae)

Black, J. L., Lorenz, G. M., Cato, A. J., Faske, T. R., Popham, H. J. R., Paddock, K. J., Bateman, N. R. & Seiter, N. J., May 22 2019, In : Journal of economic entomology. 112, 3, p. 1098-1104 7 p.

Research output: Contribution to journalArticle

Helicoverpa armigera nucleopolyhedrovirus
horizontal transmission
Baculoviridae
larva
arthropod

Fire blight disease, a fast-approaching threat to apple and pear production in China

ZHAO, Y. Q., TIAN, Y. L., WANG, L. M., GENG, G. M., ZHAO, W. J., HU, B. S. & Zhao, Y., Apr 2019, In : Journal of Integrative Agriculture. 18, 4, p. 815-820 6 p.

Research output: Contribution to journalReview article

Open Access
Pyrus
Erwinia amylovora
Malus
pears
China

First report of bacterial leaf streak of corn caused by xanthomonas vasicola pv. vasculorum in Illinois

Jamann, T. M., Plewa, D., Mideros Mora, S. X. & Bissonnette, S., May 2019, In : Plant disease. 103, 5

Research output: Contribution to journalArticle

Xanthomonas vasicola
corn
leaves

First report of red crown rot of soybeans caused by Calonectria ilicicola (anamorph: Cylindrocladium parasiticum) in Illinois

Kleczewski, N. M., Plewa, D., Kangas, C., Phillippi, E. & Kleczewski, V., Jul 2019, In : Plant disease. 103, 7, 1 p.

Research output: Contribution to journalArticle

Open Access
Calonectria
Cylindrocladium
crown rot
stem rot
anamorphs

First report of tar spot of maize (Zea mays), caused by Phyllachora maydis, in Ohio

Dalla Lana, F., Plewa, D. E., Phillippi, E. S., Garzonio, D., Hesterman, R., Kleczewski, N. M. & Paul, P. A., Jul 2019, In : Plant disease. 103, 7, 1 p.

Research output: Contribution to journalArticle

Open Access
Phyllachora
emerging diseases
etiology
Zea mays
fungi

Foliar fungicide application effects on whole plant BMR and floury corn varieties, and whole plant corn silage composition

Hollis, M. E., Pate, R. T., Mideros, S., Fellows, G. M., Akins, M., Murphy, M. R. & Cardoso, F. C., Nov 2019, In : Animal Feed Science and Technology. 257, 114264.

Research output: Contribution to journalArticle

whole crop silage
corn silage
pesticide application
Zea mays
corn

Full-length infectious clones of two new isolates of tomato mosaic virus induce distinct symptoms associated with two differential amino acid residues in 128-kDa protein

Choi, G. W., Oh, J. P., Cho, I. S., Ju, H. K., Hu, W. X., Kim, B., Seo, E. Y., Park, J. S., Domier, L. L., Hammond, J., Song, K. & Lim, H. S., Jan 1 2019, In : Plant Pathology Journal. 35, 5, p. 538-542 5 p.

Research output: Contribution to journalComment/debate

Tomato mosaic virus
clones
amino acids
proteins
Nicotiana benthamiana

Fungicide management of Phytophthora capsici in bell pepper

Babadoost, M. & de Souza, J. R., Jan 1 2019, In : Acta Horticulturae. 1257, p. 73-78 6 p.

Research output: Contribution to journalArticle

cyazofamid
Phytophthora capsici
sweet peppers
fungicides
sporangia