Research Output 1975 2020

Editorial

Preface

Plewa, M. J. & Gentile, J. M., Feb 1988, In : Mutation Research - Fundamental and Molecular Mechanisms of Mutagenesis. 197, 2, 1 p.

Research output: Contribution to journalEditorial

Sugarcane Breeding and Biotechnology to Feed the Emergent Sugarcane Biorefinery Industry

Moore, P. H. & Ming, R. R., Mar 1 2011, In : Tropical Plant Biology. 4, 1, p. 1-2 2 p.

Research output: Contribution to journalEditorial

biorefining
Saccharum
Biotechnology
biotechnology
Breeding

The Evaluation of Feedstocks in GCBB Continues with a Special Issue on Agave for Bioenergy

Davis, S. C., Griffiths, H., Holtum, J., Saavedra, A. L. & Long, S. P., Feb 2011, In : GCB Bioenergy. 3, 1, p. 1-3 3 p.

Research output: Contribution to journalEditorial

Agave
bioenergy
feedstocks
Feedstocks
evaluation

The origin and evolution of the archaeal domain

Caetano-Anollés, G. & Kim, K. M., 2014, In : Archaea. 2014, 915828.

Research output: Contribution to journalEditorial

Archaeal Proteins
Biological Evolution
Archaea

The sharing of research materials: Do you?

Ort, D. R., Jun 1 2008, In : Plant physiology. 147, 2, p. 441-442 2 p.

Research output: Contribution to journalEditorial

Cooperative Behavior
Software
Research

Twenty-five years of GCB: Putting the biology into global change

Long, S. P., Jan 1 2020, In : Global change biology. 26, 1, p. 1-2 2 p.

Research output: Contribution to journalEditorial

Open Access
Photosynthesis
Biotechnology
biotechnology
Breeding
Oryza sativa
Foreword/postscript

Preface

Caetano-Anollés, G., Jul 12 2010, Evolutionary Genomics and Systems Biology. John Wiley and Sons, p. xiii-xv

Research output: Chapter in Book/Report/Conference proceedingForeword/postscript

Preface

Ming, R. & Moore, P. H., Jan 1 2014, Genetics and Genomics of Papaya. Springer New York, p. vii-viii

Research output: Chapter in Book/Report/Conference proceedingForeword/postscript

Preface to the volume

Wusirika, R., Bohn, M. O., Lai, J. & Kole, C., Jan 1 2014, Genetics, Genomics and Breeding of Maize. CRC Press, p. xiii-xiv

Research output: Chapter in Book/Report/Conference proceedingForeword/postscript

Letter

A European science plan to sustainably increase food security under climate change

Soussana, J. F., Fereres, E., Long, S. P., Mohren, F. G. M. J., Pandya-Lorch, R., Peltonen-Sainio, P., Porter, J. R., Rosswall, T. & von Braun, J., Nov 1 2012, In : Global change biology. 18, 11, p. 3269-3271 3 p.

Research output: Contribution to journalLetter

food security
climate change
science
plan
Peptidyl Transferases
ribosomes
Ribosomes
transferases
accretion

A recommendation for naming transcription factor proteins in the grasses

Gray, J., Bevan, M., Brutnell, T., Buell, C. R., Cone, K., Hake, S., Jackson, D., Kellogg, E., Lawrence, C., McCouch, S., Mockler, T., Moose, S., Paterson, A., Peterson, T., Rokshar, D., Souza, G. M., Springer, N., Stein, N., Timmermans, M., Wang, G. L. & 1 others, Grotewold, E., Jan 1 2009, In : Plant physiology. 149, 1, p. 4-6 3 p.

Research output: Contribution to journalLetter

Plant Proteins
plant proteins
Poaceae
Transcription Factors
transcription factors

Comments on the zero-tolerance quarantine of karnal bunt of wheat

Babadoost, M., Jan 1 2000, In : Plant disease. 84, 7, p. 711-712 2 p.

Research output: Contribution to journalLetter

zero tolerance
quarantine
wheat
Greenhouse Effect
Agricultural Crops
Food supply
Chemical Models
Greenhouse effect

Inactive photosystem II centers: A resolution of discrepencies in photosystem II quantitation

Ort, D. R. & Whitmarsh, J., Jan 1 1990, In : Photosynthesis research. 23, 1, p. 101-104 4 p.

Research output: Contribution to journalLetter

Photosystem II Protein Complex
photosystem II
Thylakoids
Membranes
thylakoids

Influences of laboratory environment on behavior [1]

Chesler, E. J., Wilson, S. G., Lariviere, W. R., Rodriguez-Zas, S. L. & Mogil, J. S., Nov 1 2002, In : Nature Neuroscience. 5, 11, p. 1101-1102 2 p.

Research output: Contribution to journalLetter

Animal Behavior
Neurosciences

Order and polarity in character state transformation models that root the tree of life

Caetano-Anollés, K., Caetano-Anollés, D., Nasir, A., Kim, K. M. & Caetano-Anollés, G., Jun 2018, In : Biochimie. 149, p. 135-136 2 p.

Research output: Contribution to journalLetter

PacBio Sequencing Reveals Transposable Elements as a Key Contributor to Genomic Plasticity and Virulence Variation in Magnaporthe oryzae

Bao, J., Chen, M., Zhong, Z., Tang, W., Lin, L., Zhang, X., Jiang, H., Zhang, D., Miao, C., Tang, H., Zhang, J., Lu, G., Ming, R., Norvienyeku, J., Wang, B. & Wang, Z., Nov 6 2017, In : Molecular Plant. 10, 11, p. 1465-1468 4 p.

Research output: Contribution to journalLetter

Magnaporthe
Magnaporthe oryzae
DNA Transposable Elements
transposons
Virulence

Phenotyping photosynthesis on the limit - a critical examination of RACiR

Taylor, S. H. & Long, S. P., Jan 1 2019, In : The New phytologist. 221, 2, p. 621-624 4 p.

Research output: Contribution to journalLetter

Open Access
Ribulose-Bisphosphate Carboxylase
Photosynthesis
ribulose-bisphosphate carboxylase
global change
photosynthesis

Preserving accuracy in GenBank

Bruns, T. D., Blackwell, M., Edwards, I., Taylor, A. F. S., Horton, T., Zhang, N., Kõljalg, U., May, G., Kuyper, T. W., Bever, J. D., Gilbert, G., Taylor, J. W., DeSantis, T. Z., Pringle, A., Borneman, J., Thorn, G., Berbee, M., Mueller, G. M., Andersen, G. L., Vellinga, E. C. & 236 others, Branco, S., Anderson, I., Dickie, I. A., Avis, P., Timonen, S., Kjøller, R., Lodge, D. J., Bateman, R. M., Purvis, A., Crous, P. W., Hawkes, C., Barraclough, T., Burt, A., Nilsson, R. H., Larsson, K. H., Alexander, I., Moncalvo, J. M., Berube, J., Spatafora, J., Thorsten Lumbsch, H., Blair, J. E., Suh, S. O., Pfister, D. H., Binder, M., Boehm, E. W., Kohn, L., Mata, J. L., Dyer, P., Sung, G. H., Dentinger, B., Simmons, E. G., Baird, R. E., Volk, T. J., Perry, B. A., Kerrigan, R. W., Campbell, J., Rajesh, J., Reynolds, D. R., Geiser, D., Humber, R. A., Hausmann, N., Szaro, T., Stajich, J., Gathman, A., Peay, K. G., Henkel, T., Robinson, C. H., Pukkila, P. J., Nguyen, N. H., Villalta, C., Kennedy, P., Bergemann, S., Catherine Aime, M., Kauff, F., Porras-Alfaro, A., Gueidan, C., Beck, A., Andersen, B., Marek, S., Crouch, J. A., Kerrigan, J., Beagle Ristaino, J., Hodge, K. T., Kuldau, G., Samuels, G. J., Raja, H. A., Voglmayr, H., Gardes, M., Janos, D. P., Rogers, J. D., Cannon, P., Woolfolk, S. W., Kistler, H. C., Castellano, M. A., Maldonado-Ramírez, S. L., Kirk, P. M., Farrar, J. J., Osmundson, T., Currah, R. S., Vujanovic, V., Chen, W., Korf, R. P., Atallah, Z. K., Harrison, K. J., Guarro, J., Bates, S. T., Enrico Bonello, P., Bridge, P., Schell, W., Rossi, W., Stenlid, J., Frisvad, J. C., Miller, R. M., Baker, S. E., Hallen, H. E., Janso, J. E., Wilson, A. W., Conway, K. E., Egerton-Warburton, L., Wang, Z., Eastburn, D., Hong Ho, W. W., Kroken, S., Stadler, M., Turgeon, G., Lichtwardt, R. W., Stewart, E. L., Wedin, M., Li, D. W., Uchida, J. Y., Jumpponen, A., Deckert, R. J., Beker, H. J., Rogers, S. O., Xu, J., Johnston, P., Shoemaker, R. A., Liu, M., Marques, G., Summerell, B., Sokolski, S., Thrane, U., Widden, P., Bruhn, J. N., Bianchinotti, V., Tuthill, D., Baroni, T. J., Barron, G., Hosaka, K., Jewell, K., Piepenbring, M., Sullivan, R., Griffith, G. W., Bradley, S. G., Aoki, T., Yoder, W. T., Ju, Y. M., Berch, S. M., Trappe, M., Duan, W., Bonito, G., Taber, R. A., Coelho, G., Bills, G., Ganley, A., Agerer, R., Nagy, L., Roy, B. A., Læssøe, T., Hallenberg, N., Tichy, H. V., Stalpers, J., Langer, E., Scholler, M., Krueger, D., Pacioni, G., Pöder, R., Pennanen, T., Capelari, M., Nakasone, K., Tewari, J. P., Miller, A. N., Decock, C., Huhndorf, S., Wach, M., Vishniac, H. S., Yohalem, D. S., Smith, M. E., Glenn, A. E., Spiering, M., Lindner, D. L., Schoch, C., Redhead, S. A., Ivors, K., Jeffers, S. N., Geml, J., Okafor, F., Spiegel, F. W., Dewsbury, D., Carroll, J., Porter, T. M., Pashley, C., Carpenter, S. E., Abad, G., Voigt, K., Arenz, B., Methven, A. S., Schechter, S., Vance, P., Mahoney, D., Kang, S., Rheeder, J. P., Mehl, J., Greif, M., Ndzi Ngala, G., Ammirati, J., Kawasaki, M., Gwo-Fang, Y., Matsumoto, T., Smith, D., Koenig, G., Luoma, D., May, T., Leonardi, M., Sigler, L., Taylor, D. L., Gibson, C., Sharpton, T., Hawksworth, D. L., Carmine Dianese, J., Trudell, S. A., Paulus, B., Padamsee, M., Callac, P., Lima, N., White, M., Barreau, C., Juncai, M. A., Buyck, B., Rabeler, R. K., Liles, M. R., Estes, D., Carter, R., Herr, J. M., Chandler, G., Kerekes, J., Cruse-Sanders, J., Galán Márquez, R., Horak, E., Fitzsimons, M., Döring, H., Yao, S., Hynson, N., Ryberg, M., Arnold, A. E. & Hughes, K., Mar 21 2008, In : Science. 319, 5870, 1 p.

Research output: Contribution to journalLetter

Pros and cons of foreign genes in crops [1]

Bengtsson, B. O. & Ort, D. R., Jan 1 1997, In : Nature. 385, 6614, 1 p.

Research output: Contribution to journalLetter

Food Labeling
Genetic Engineering
Environmental Health
Genetically Modified Plants
Agriculture

Reply to: Brazilian ethanol expansion subject to limitations

Jaiswal, D., De Souza, A. P., Larsen, S., LeBauer, D. S., Miguez, F. E., Sparovek, G., Bollero, G. A., Buckeridge, M. S. & Long, S. P., Mar 1 2019, In : Nature Climate Change. 9, 3, p. 211-212 2 p.

Research output: Contribution to journalLetter

ethanol

Response

Glover, J. D., Reganold, J. P., Bell, L. W., Borevitz, J., Brummer, E. C., Buckler, E. S., Cox, C. M., Cox, T. S., Crews, T. E., Culman, S. W., Dehaan, L. R., Eriksson, D., Gill, B. S., Holland, J., Hu, F., Hulke, B. S., Ibrahim, A. M. H., Jackson, W., Jones, S. S., Murray, S. C. & 9 others, Paterson, A. H., Ploschuk, E., Sacks, E. J., Snapp, S., Tao, D., Van Tassel, D. L., Wade, L. J., Wyse, D. L. & Xu, Y., Oct 1 2010, In : Science. 330, 6000, p. 33-34 2 p.

Research output: Contribution to journalLetter

Response [3]

Long, S. P., Ainsworth, E. A., Leakey, A. D. B., Ort, D. R., Nösberger, J. & Schimel, D., Jan 26 2007, In : Science. 315, 5811, 1 p.

Research output: Contribution to journalLetter

The effect of chilling in the light on photophosphorylation - Analysis of discrepancies between in vitro and in vivo results

Wise, R. R., Terashima, I. & Ort, D. R., Aug 1 1990, In : Photosynthesis research. 25, 2, p. 137-139 3 p.

Research output: Contribution to journalLetter

Photophosphorylation
Chilling
photophosphorylation
Cucumis sativus
Photosynthesis

Urgent need for a common metric to make precipitation manipulation experiments comparable

Vicca, S., Gilgen, A. K., Camino Serrano, M., Dreesen, F. E., Dukes, J. S., Estiarte, M., Gray, S. B., Guidolotti, G., Hoeppner, S. S., Leakey, A. D. B., Ogaya, R., Ort, D. R., Ostrogovic, M. Z., Rambal, S., Sardans, J., Schmitt, M., Siebers, M., van der Linden, L., van Straaten, O. & Granier, A., Aug 1 2012, In : New Phytologist. 195, 3, p. 518-522 5 p.

Research output: Contribution to journalLetter

Plant Physiological Phenomena
Physiological Adaptation
Species Specificity
Plant Roots
Rain

We want YOU on the Agronomy Journal Editorial Board

Bullock, D., Jul 1 2008, In : Agronomy Journal. 100, 4, 1 p.

Research output: Contribution to journalLetter

agronomy
Paper

Effect of manothermosonication (MTS) on quality of orange juice

Lee, J. W., Feng, H. & Kushad, M., Dec 1 2005, p. 12272-12275. 4 p.

Research output: Contribution to conferencePaper

Ascorbic acid
Vitamins
Management information systems
Pulp
Degradation

Rapid analysis of fatty acids in soybeans using FT-NIR

Nimaiyar, S., Paulsen, M. R. & Nelson, R. L., Dec 1 2004, p. 7023-7037. 15 p.

Research output: Contribution to conferencePaper

Fatty acids
Mean square error
Fourier transforms
Calibration
Infrared radiation
Review article

2,4-D Past, Present, and Future: A Review

Peterson, M. A., McMaster, S. A., Riechers, D. E., Skelton, J. & Stahlman, P. W., Apr 1 2016, In : Weed Technology. 30, 2, p. 303-345 43 p.

Research output: Contribution to journalReview article

2,4-D
herbicidal properties
ecotoxicology
commercialization
biotechnology

Above- and Belowground Prairie Cordgrass Response to Applied Nitrogen on Marginal Land

Hernández, K. A., Owens, V. N., Boe, A., González-Hernández, J. L., Lee, D. & Aberle, E., Jun 1 2018, In : Bioenergy Research. 11, 2, p. 440-448 9 p.

Research output: Contribution to journalReview article

Spartina pectinata
Biomass
Nitrogen
nitrogen
biomass production

Accelerating yield potential in soybean: Potential targets for biotechnological improvement

Ainsworth, E. A., Yendrek, C. R., Skoneczka, J. A. & Long, S. P., Jan 1 2012, In : Plant, Cell and Environment. 35, 1, p. 38-52 15 p.

Research output: Contribution to journalReview article

Soybeans
soybeans
abortion (plants)
Carbon
carbon

Activation of promutagens by green plants

Plewa, M. J. & Wagner, E. D., Jan 1 1993, In : Annual Review of Genetics. 27, p. 93-113 21 p.

Research output: Contribution to journalReview article

Viridiplantae
Acetyltransferases
Mutagens
Biotransformation

Adding biofuels to the invasive species fire?

Raghu, S., Anderson, R. C., Daehler, C. C., Davis, A. S., Wiedenmann, R. N., Simberloff, D. & Mack, R. N., Sep 22 2006, In : Science. 313, 5794, 1 p.

Research output: Contribution to journalReview article

Introduced Species
Biofuels

A decade of QTL mapping for cyst nematode resistance in soybean

Concibido, V. C., Diers, B. W. & Arelli, P. R., Jul 1 2004, In : Crop Science. 44, 4, p. 1121-1131 11 p.

Research output: Contribution to journalReview article

Heterodera glycines
cyst nematodes
quantitative trait loci
soybeans
introduced plants

Agronomic experiences with Miscanthus x giganteus in Illinois, USA.

Pyter, R., Heaton, E., Dohleman, F., Voigt, T. & Long, S., 2009, In : Methods in molecular biology (Clifton, N.J.). 581, p. 41-52 12 p.

Research output: Contribution to journalReview article

Biomass
Poaceae
Rhizome
Research
Japan

A multi-biome gap in understanding of crop and ecosystem responses to elevated CO 2

Leakey, A., Bishop, K. A. & Ainsworth, E., Jun 1 2012, In : Current opinion in plant biology. 15, 3, p. 228-236 9 p.

Research output: Contribution to journalReview article

ecosystems
crops
environmental factors
temperate zones
subtropics

Anaerobic gene expression and flooding tolerance in maize

Sachs, M. M., Subbaiah, C. C. & Saab, I. N., Jan 1 1996, In : Journal of experimental botany. 47, 294, p. 1-15 15 p.

Research output: Contribution to journalReview article

flooding tolerance
Zea mays
Gene Expression
xylose isomerase
gene expression

An ecological perspective on managing weeds during the great selection for herbicide resistance

Bagavathiannan, M. V. & Davis, A. S., Oct 2018, In : Pest Management Science. 74, 10, p. 2277-2286 10 p.

Research output: Contribution to journalReview article

herbicide resistance
weed control
weeds
herbicide-resistant weeds
chemical control

An evolutionarily structural universe of protein architecture

Caetano-Anollés, G. & Caetano-Anollés, D., Jul 1 2003, In : Genome Research. 13, 7, p. 1563-1571 9 p.

Research output: Contribution to journalReview article

Phylogeny
Proteins
Proteome
Archaea
Eukaryota

A photoprotective role for O2 as an alternative electron sink in photosynthesis?

Ort, D. R. & Baker, N. R., Jan 1 2002, In : Current opinion in plant biology. 5, 3, p. 193-198 6 p.

Research output: Contribution to journalReview article

photostability
ascorbate peroxidase
photosystem II
electrons
photosynthesis
meta-analysis
Productivity
productivity
compost
Soils

Archaea: The first domain of diversified life

Caetano-Anollés, G., Nasir, A., Zhou, K., Caetano-Anollés, D., Mittenthal, J. E., Sun, F. J. & Kim, K. M., 2014, In : Archaea. 2014, 590214.

Research output: Contribution to journalReview article

Archaea
origin of life
phylogenetics
phylogeny
molecular models

Archaea-First and the Co-Evolutionary Diversification of Domains of Life

Staley, J. T. & Caetano-Anolles, G., Aug 2018, In : BioEssays. 40, 8, 1800036.

Research output: Contribution to journalReview article

Archaea
Bacteria
Cells
Eukaryota
Methane

Are herbicides a once in a century method of weed control?

Davis, A. S. & Frisvold, G. B., Nov 2017, In : Pest Management Science. 73, 11, p. 2209-2220 12 p.

Research output: Contribution to journalReview article

weed control
herbicides
mechanism of action
weeds
market power

A review of resistance breeding options targeting western corn rootworm (Diabrotica virgifera virgifera LeConte)

Ivezić, M., Raspudić, E., Brmež, M., Majić, I., Brkić, I., Tollefson, J. J., Bohn, M., Hibbard, B. E. & Šimić, D., Aug 1 2009, In : Agricultural and Forest Entomology. 11, 3, p. 307-311 5 p.

Research output: Contribution to journalReview article

Diabrotica virgifera virgifera
targeting
maize
breeding
corn

Arguments Reinforcing the Three-Domain View of Diversified Cellular Life

Nasir, A., Kim, K. M., Da Cunha, V. & Caetano-Anollés, G., Jan 1 2016, In : Archaea. 2016, 1851865.

Research output: Contribution to journalReview article

Eukaryota
ancestry
Phylogeny
eukaryote
domain structure

Association mapping: Critical considerations shift from genotyping to experimental design

Myles, S., Peiffer, J., Brown, P. J., Ersoz, E. S., Zhang, Z., Costich, D. E. & Buckler, E., Aug 1 2009, In : Plant Cell. 21, 8, p. 2194-2202 9 p.

Research output: Contribution to journalReview article

Chromosome Mapping
genotyping
chromosome mapping
Research Design
experimental design