Research Output 1975 2020

Article

A survey of the small RNA population during far-red light-induced apical hook opening

Li, Y., Varala, K. & Hudson, M. E., Apr 29 2014, In : Frontiers in Plant Science. 5, APR, 156.

Research output: Contribution to journalArticle

far-red light
etiolation
RNA
seedlings
transcriptome

Asymmetric purine-pyrimidine distribution in cellular small RNA population of papaya

Aryal, R., Yang, X., Yu, Q., Sunkar, R., Li, L. & Ming, R., Dec 5 2012, In : BMC genomics. 13, 1, 682.

Research output: Contribution to journalArticle

Carica
MicroRNAs
RNA
Population
Ribonuclease III

A third allele at the soybean dt1 locus

Thompson, J. A., Bernard, R. L. & Nelson, R. L., Jan 1 1997, In : Crop Science. 37, 3, p. 757-762 6 p.

Research output: Contribution to journalArticle

isogenic lines
soybeans
alleles
loci
stems

A transgenic locus in soybean exhibits a high level of recombination

Choffnes, D. S., Philip, R. & Vodkin, L. O., Jan 1 2001, In : In Vitro Cellular and Developmental Biology - Plant. 37, 6, p. 756-762 7 p.

Research output: Contribution to journalArticle

Transgenes
Soybeans
Genetic Recombination
transgenes
genetically modified organisms

A Tree of Cellular Life Inferred from a Genomic Census of Molecular Functions

Kim, K. M., Nasir, A., Hwang, K. & Caetano-Anollés, G., Nov 29 2014, In : Journal of Molecular Evolution. 79, 5-6, p. 240-262 23 p.

Research output: Contribution to journalArticle

Censuses
census
genomics
Phylogeny
Animalia

A Triticum tauschii protein kinase related to wheat PKABA1 is associated with ABA signaling and is distributed between the nucleus and cytosol

Holappa, L. D., Walker-Simmons, M. K., Ho, T. H. D., Riechers, D. E., Beckles, D. M. & Jones, R. L., May 2005, In : Journal of Cereal Science. 41, 3, p. 333-346 14 p.

Research output: Contribution to journalArticle

Triticum
cytosol
protein kinases
Cytosol
Protein Kinases

A turnip mosaic virus determinant of systemic necrosis in nicotiana benthamiana and a novel resistance-breaking determinant in Chinese cabbage identified from chimeric infectious clones

Kim, I. H., Ju, H. K., Gong, J., Han, J. Y., Seo, E. Y., Cho, S. W., Hu, W. X., Choi, S. R., Lim, Y. P., Domier, L. L., Hammond, J. & Lim, H. S., Jan 1 2019, In : Phytopathology. 109, 9, p. 1638-1647 10 p.

Research output: Contribution to journalArticle

Turnip mosaic virus
Chinese cabbage
Nicotiana benthamiana
chimerism
necrosis

A two-component system in Ralstonia (Pseudomonas) solanacearum modulates production of PhcA-regulated virulence factors in response to 3- hydroxypalmitic acid methyl ester

Clough, S. J., Lee, K. E., Schell, M. A. & Denny, T. P., Jun 1997, In : Journal of bacteriology. 179, 11, p. 3639-3648 10 p.

Research output: Contribution to journalArticle

Ralstonia solanacearum
Virulence Factors
Esters
Operon
Cellulase

A universal molecular clock of protein folds and its power in tracing the early history of aerobic metabolism and planet oxygenation

Wang, M., Jiang, Y. Y., Kim, K. M., Qu, G., Ji, H. F., Mittenthal, J. E., Zhang, H. Y. & Caetano-Anollés, G., Jan 1 2011, In : Molecular biology and evolution. 28, 1, p. 567-582 16 p.

Research output: Contribution to journalArticle

Planets
oxygenation
planet
Molecular Evolution
metabolism
Climate Change
Photosynthesis
Atmosphere
Biochemistry
biochemistry

Autophosphorylation-based calcium (Ca 2+ ) sensitivity priming and Ca 2+ /calmodulin inhibition of Arabidopsis thaliana Ca 2+ -dependent protein kinase 28 (CPK28)

Bender, K. W., Blackburn, R. K., Monaghan, J., Derbyshire, P., Menke, F. L. H., Zipfel, C., Goshe, M. B., Zielinski, R. E. & Huber, S. C., Mar 10 2017, In : Journal of Biological Chemistry. 292, 10, p. 3988-4002 15 p.

Research output: Contribution to journalArticle

Calmodulin
Arabidopsis
Protein Kinases
Calcium
Phosphotransferases

Autophosphorylation of Tyr-610 in the receptor kinase BAK1 plays a role in brassinosteroid signaling and basal defense gene expression

Oh, M. H., Wang, X., Wu, X., Zhao, Y., Clouse, S. D. & Huber, S. C., Oct 12 2010, In : Proceedings of the National Academy of Sciences of the United States of America. 107, 41, p. 17827-17832 6 p.

Research output: Contribution to journalArticle

Brassinosteroids
Phosphotransferases
Gene Expression
Phosphorylation
Pseudomonas syringae

Auxin regulation involved in gynoecium morphogenesis of papaya flowers

Zhou, P., Fatima, M., Ma, X., Liu, J. & Ming, R., Dec 1 2019, In : Horticulture Research. 6, 1, 119.

Research output: Contribution to journalArticle

Open Access
Carica
gynoecium
Indoleacetic Acids
papayas
Morphogenesis

A vision for incorporating environmental effects into nitrogen management decision support tools for U.S. maize production

Banger, K., Yuan, M., Wang, J., Nafziger, E. D. & Pittelkow, C. M., Jul 28 2017, In : Frontiers in Plant Science. 8, 1270.

Research output: Contribution to journalArticle

crop models
crop production
corn
nitrogen
information management

A waterhemp (Amaranthus tuberculatus) biotype with multiple resistance across three herbicide sites of action

Patzoldt, W. L., Tranel, P. J. & Hager, A. G., Jan 1 2005, In : Weed Science. 53, 1, p. 30-36 7 p.

Research output: Contribution to journalArticle

Amaranthus tuberculatus
biotypes
herbicides
lactofen
protoporphyrinogen oxidase

A waterhemp (Amaranthus tuberculatus) population resistant to 2,4-D

Bernards, M. L., Crespo, R. J., Kruger, G. R., Gaussoin, R. & Tranel, P. J., Jul 1 2012, In : Weed Science. 60, 3, p. 379-384 6 p.

Research output: Contribution to journalArticle

Amaranthus tuberculatus
2,4-D
at-risk population
dicamba
dose response

Bacterial leaf spot diseases of leafy crucifers in Oklahoma caused by pathovars of Xanthomonas campestris

Zhao, Y., Damicone, J. P., Demezas, D. H. & Bender, C. L., Jan 1 2000, In : Plant disease. 84, 9, p. 1008-1014 7 p.

Research output: Contribution to journalArticle

leaf spot
Xanthomonas campestris
Brassicaceae
lesions (plant)
kale

Bacterial leaf spot of leafy crucifers in Oklahoma caused by Pseudomonas syringae pv. maculicola

Zhao, Y., Damicone, J. P., Demezas, D. H., Rangaswamy, V. & Bender, C. L., Jan 1 2000, In : Plant disease. 84, 9, p. 1015-1020 6 p.

Research output: Contribution to journalArticle

Pseudomonas syringae pv. maculicola
leaf spot
Brassicaceae
lesions (plant)
kale

Balancing selection contributed to domestication of autopolyploid sugarcane (Saccharum officinarum L.)

Arro, J., Park, J. W., Wai, C. M., VanBuren, R., Pan, Y. B., Nagai, C., da Silva, J. & Ming, R. R., May 1 2016, In : Euphytica. 209, 2, p. 477-493 17 p.

Research output: Contribution to journalArticle

autopolyploidy
Saccharum
Saccharum officinarum
domestication
sugarcane

Baseline sensitivity of Ascochyta rabiei to azoxystrobin, pyraclostrobin, and boscalid

Wise, K. A., Bradley, C. A., Pasche, J. S., Gudmestad, N. C., Dugan, F. M. & Chen, W., Feb 1 2008, In : Plant disease. 92, 2, p. 295-300 6 p.

Research output: Contribution to journalArticle

boscalid
Ascochyta rabiei
pyraclostrobin
fungicides
cell respiration

Baseline sensitivity of Cercospora zeae-maydis to quinone outside inhibitor fungicides

Bradley, C. & Pedersen, D. K., Feb 1 2011, In : Plant disease. 95, 2, p. 189-194 6 p.

Research output: Contribution to journalArticle

Cercospora zeae-maydis
quinones
fungicides
leaf spot
pyraclostrobin

Bayesian Analysis via Gibbs Sampling of Susceptibility to Intramammary Infection in Holstein Cattle

Rodriguez-Zas, S. L., Gianola, D. & Shook, G. E., Oct 1998, In : Journal of Dairy Science. 81, 10, p. 2710-2722 13 p.

Research output: Contribution to journalArticle

Bayes Theorem
Bayesian theory
Holstein
Mastitis
cattle

B-chromosome and C-band heterochromatin variation in Arizona maize populations adapted to different altitudes

Porter, H. L. & Rayburn, A. L., Jan 1 1990, In : Genome. 33, 5, p. 659-662 4 p.

Research output: Contribution to journalArticle

Chromosomes, Human, 6-12 and X
Heterochromatin
Zea mays
Population

B-class MADS-box genes in trioecious papaya: Two paleoAP3 paralogs, CpTM6-1 and CpTM6-2, and a PI ortholog CpPI

Ackerman, C. M., Yu, Q., Kim, S., Paull, R. E., Moore, P. H. & Ming, R. R., Mar 1 2008, In : Planta. 227, 4, p. 741-753 13 p.

Research output: Contribution to journalArticle

Carica
papayas
Genes
flowers
genes

Beauveria bassiana is a pathogen of Megacopta cribraria (Hemiptera: Plataspidae) in South Carolina

Seiter, N. J., Grabke, A., Greene, J. K., Kerrigan, J. L. & Reay-Jones, F. P. F., Jul 1 2014, In : Journal of Entomological Science. 49, 3, p. 326-330 5 p.

Research output: Contribution to journalArticle

Megacopta cribraria
Plataspidae
entomopathogens
Beauveria bassiana
biological control

Beef cow prepartum supplement level and age at weaning: II. Effects of developmental programming on performance and carcass composition of steer progeny

Shoup, L. M., Wilson, T. B., González-Peña, D., Ireland, F. A., Rodriguez-Zas, S. L., Felix, T. L. & Shike, D. W., Oct 2015, In : Journal of animal science. 93, 10, p. 4936-4947 12 p.

Research output: Contribution to journalArticle

beef cows
carcass composition
Weaning
weaning
Insulin

Behavior-specific changes in transcriptional modules lead to distinct and predictable neurogenomic states

Chandrasekaran, S., Ament, S. A., Eddy, J. A., Rodriguez-Zas, S. L., Schatz, B. R., Price, N. D. & Robinson, G. E., Nov 1 2011, In : Proceedings of the National Academy of Sciences of the United States of America. 108, 44, p. 18020-18025 6 p.

Research output: Contribution to journalArticle

Transcription Factors
Gene Regulatory Networks
Brain
Bees
Genes

Being smart is not enough to ensure success: Integrating personal development into a general education course

Whitehall, A. P., Hill, L. G., Yost, D. M. & Kidwell, K. K., Jan 1 2016, In : Journal of General Education. 65, 3-4, p. 241-263 23 p.

Research output: Contribution to journalArticle

general education
university
conflict management
social integration
employer

Benefits of using molecular structure and abundance in phylogenomic analysis

Caetano-Anollés, G. & Nasir, A., Dec 1 2012, In : Frontiers in Genetics. 3, SEP, Article 172.

Research output: Contribution to journalArticle

Molecular Structure

BETYdb: a yield, trait, and ecosystem service database applied to second-generation bioenergy feedstock production

LeBauer, D., Kooper, R., Mulrooney, P., Rohde, S., Wang, D., Long, S. P. & Dietze, M. C., Jan 2018, In : GCB Bioenergy. 10, 1, p. 61-71 11 p.

Research output: Contribution to journalArticle

bioenergy
Biofuels
feedstocks
biofuels
biofuel

Beyond the nutrient strategies: Common ground to accelerate agricultural water quality improvement in the upper Midwest

Christianson, R., Christianson, L., Wong, C., Helmers, M., McIsaac, G., Mulla, D. & McDonald, M., Jan 15 2018, In : Journal of Environmental Management. 206, p. 1072-1080 9 p.

Research output: Contribution to journalArticle

Nutrients
Water quality
nutrient
Nitrogen
production system

Bile acid sodium symporter BASS6 can transport glycolate and is involved in photorespiratory metabolism in Arabidopsis thaliana

South, P. F., Walker, B. J., Cavanagh, A. P., Rolland, V., Badger, M. & Ort, D. R., Apr 2017, In : Plant Cell. 29, 4, p. 808-823 16 p.

Research output: Contribution to journalArticle

glycolic acid
symporters
Symporters
photorespiration
bile acids
Acclimatization
Soybeans
Glycine max
acclimation
carbon dioxide

Biochemical and mutagenic characterization of plant‐activated aromatic amines

Plewa, M. J., Gichner, T., Xin, H., Seo, KY. Y., Smith, S. R. & Wagner, E. D., Aug 1993, In : Environmental Toxicology and Chemistry. 12, 8, p. 1353-1363 11 p.

Research output: Contribution to journalArticle

Amines
Chemical activation
Plant Cells
Cultured Cells
Agrochemicals

Biochemical and structural consequences of a glycine deletion in the α-8 helix of protoporphyrinogen oxidase

Dayan, F. E., Daga, P. R., Duke, S. O., Lee, R. M., Tranel, P. J. & Doerksen, R. J., Jul 1 2010, In : Biochimica et Biophysica Acta - Proteins and Proteomics. 1804, 7, p. 1548-1556 9 p.

Research output: Contribution to journalArticle

Protoporphyrinogen Oxidase
Glycine
Herbicides
Herbicide Resistance
Catalytic Domain

Biochemical and transcriptomic analysis of maize diversity to elucidate drivers of leaf carbon isotope composition

Kolbe, A. R., Studer, A. J. & Cousins, A. B., Jan 1 2018, In : Functional Plant Biology. 45, 5, p. 489-500 12 p.

Research output: Contribution to journalArticle

transcriptomics
isotopes
phosphoenolpyruvate carboxylase
carbonate dehydratase
ribulose 1,5-diphosphate

Biochemical characterization of metabolism-based atrazine resistance in Amaranthus tuberculatus and identification of an expressed GST associated with resistance

Evans, A. F., O'Brien, S. R., Ma, R., Hager, A. G., Riggins, C. W., Lambert, K. N. & Riechers, D. E., Oct 2017, In : Plant Biotechnology Journal. 15, 10, p. 1238-1249 12 p.

Research output: Contribution to journalArticle

Amaranthus tuberculatus
Amaranthus
Atrazine
atrazine
Glutathione Transferase

Biochemical proxies indicate differences in soil C cycling induced by long-term tillage and residue management in a tropical agroecosystem

Margenot, A. J., Pulleman, M. M., Sommer, R., Paul, B. K., Parikh, S. J., Jackson, L. E. & Fonte, S. J., Nov 1 2017, In : Plant and Soil. 420, 1-2, p. 315-329 15 p.

Research output: Contribution to journalArticle

agricultural ecosystem
agroecosystems
soil organic carbon
tillage
organic carbon

Biochemical regulation during the mid-day decline of photosynthesis in field-grown sunflower

Wise, R. R., Sparrow, D. H., Ortiz-Lopez, A. & Ort, D. R., 1991, In : Plant Science. 74, 1, p. 45-52 8 p.

Research output: Contribution to journalArticle

Helianthus
Photosynthesis
Helianthus annuus
photosynthesis
leaves

Biocontainer use in a Petunia ×hybrida greenhouse production system: A cradle-to-gate carbon footprint assessment of secondary impacts

Koeser, A. K., Lovell, S. T., Petri, A. C., Brumfield, R. G. & Stewart, J. R., Mar 2014, In : HortScience. 49, 3, p. 265-271 7 p.

Research output: Contribution to journalArticle

carbon footprint
Petunia hybrida
greenhouse production
global warming
containers

Biocontainer water use in short-term greenhouse crop production

Koeser, A., Lovell, S. T., Evans, M. & Stewart, J. R., Apr 1 2013, In : HortTechnology. 23, 2, p. 215-219 5 p.

Research output: Contribution to journalArticle

crop production
containers
greenhouses
plastics
water

Biodegradable plastic and fabric mulch performance in field and high tunnel cucumber production

Wortman, S. E., Kadoma, I. & Crandall, M. D., Apr 2016, In : HortTechnology. 26, 2, p. 148-155 8 p.

Research output: Contribution to journalArticle

biodegradability
cucumbers
plastics
soil
films (materials)

Bioeconomic evaluation of sow longevity and profitability

Rodriguez-Zas, S. L., Southey, B. R., Knox, R. V., Connor, J. F., Lowe, J. F. & Roskamp, B. J., Dec 2003, In : Journal of Animal Science. 81, 12, p. 2915-2922 8 p.

Research output: Contribution to journalArticle

bioeconomics
profitability
sows
genetic lines
herds

Bioenergy yields of several cropping systems in the U.S. corn belt

Nafziger, E. D., Villamil, M. B., Niekamp, J., Iutzi, F. W. & Davis, V. M., Mar 1 2016, In : Agronomy Journal. 108, 2, p. 559-565 7 p.

Research output: Contribution to journalArticle

Corn Belt region
bioenergy
cropping systems
Thlaspi arvense
corn

Biofuels on the landscape: Is "land sharing" preferable to "land sparing"?

Anderson-Teixeira, K. J., Duval, B. D., Long, S. P. & Delucia, E. H., Dec 1 2012, In : Ecological Applications. 22, 8, p. 2035-2048 14 p.

Research output: Contribution to journalArticle

biofuel
bioenergy
ecosystem service
crop
greenhouse gas

Biogeochemical consequences of regional land use change to a biofuel crop in the southeastern United States

Duval, B. D., Hartman, M., Marx, E., Parton, W. J., Long, S. P. & DeLucia, E. H., Dec 1 2015, In : Ecosphere. 6, 12, 265.

Research output: Contribution to journalArticle

energy crops
canes
Southeastern United States
biofuel
land use change

Bioinformatics analysis of transcriptome dynamics during growth in Angus cattle longissimus muscle

Moisá, S. J., Shike, D. W., Graugnard, D. E., Rodriguez-Zas, S. L., Everts, R. E., Lewin, H. A., Faulkner, D. B., Berger, L. L. & Loor, J. J., Jan 1 2013, In : Bioinformatics and Biology Insights. 7, p. 253-270 18 p.

Research output: Contribution to journalArticle

Gene Expression Profiling
Bioinformatics
Computational Biology
Muscle
Genes

Bioinformatics and gene network analyses of the swine mammary gland transcriptome during late gestation

Zhao, W., Shahzad, K., Jiang, M., Graugnard, D. E., Rodriguez-Zas, S. L., Luo, J., Loor, J. J. & Hurley, W. L., Jul 19 2013, In : Bioinformatics and Biology Insights. 7, p. 193-216 24 p.

Research output: Contribution to journalArticle

Interleukin-4 Receptors
Gene Networks
Gene Regulatory Networks
Human Mammary Glands
Bioinformatics

Biokinetic Analysis and Metabolic Fate of 2,4-D in 2,4-D-Resistant Soybean (Glycine max)

Skelton, J. J., Simpson, D. M., Peterson, M. A. & Riechers, D. E., Jul 26 2017, In : Journal of Agricultural and Food Chemistry. 65, 29, p. 5847-5859 13 p.

Research output: Contribution to journalArticle

2,4-Dichlorophenoxyacetic Acid
Soybeans
Glycine
2,4-D
Glycine max

Biolistic transformation, expression, and inheritance of bovine β-casein in soybean (Glycine max)

Maughan, P. J., Philip, R., Cho, M. J., Widholm, J. M. & Vodkin, L. O., Jan 1 1999, In : In Vitro Cellular and Developmental Biology - Plant. 35, 4, p. 344-349 6 p.

Research output: Contribution to journalArticle

Biolistics
biolistics
Caseins
Soybeans
Glycine max