Research Output 1975 2020

Article

A novel, multiplexed, probe-based quantitative PCR assay for the soybean rootand stem-rot pathogen, Phytophthora sojae, utilizes its transposable element

Haudenshield, J. S., Song, J. Y. & Hartman, G. L., Apr 2017, In : PloS one. 12, 4, e0176567.

Research output: Contribution to journalArticle

Phytophthora
Phytophthora sojae
stem rot
DNA Transposable Elements
Pathogens

A novel dynamic impact approach (DIA) for functional analysis of time-course omics studies: Validation using the bovine mammary transcriptome

Bionaz, M., Periasamy, K., Rodriguez-Zas, S. L., Hurley, W. L. & Loor, J. J., Mar 16 2012, In : PloS one. 7, 3, e32455.

Research output: Contribution to journalArticle

Functional analysis
Validation Studies
Transcriptome
transcriptome
breasts

A novel flavivirus in the soybean cyst nematode

Bekal, S., Domier, L. L., Gonfa, B., McCoppin, N. K., Lambert, K. N. & Bhalerao, K., Jun 2014, In : Journal of General Virology. 95, PART 6, p. 1272-1280 9 p.

Research output: Contribution to journalArticle

Flavivirus
Soybeans
Cysts
Viruses
Pestivirus

A novel high-throughput multi-parameter flow cytometry based method for monitoring and rapid characterization of microbiome dynamics in anaerobic systems

Dhoble, A. S., Bekal, S., Dolatowski, W., Yanz, C., Lambert, K. N. & Bhalerao, K. D., Nov 1 2016, In : Bioresource Technology. 220, p. 566-571 6 p.

Research output: Contribution to journalArticle

Flow cytometry
flow cytometry
Throughput
Monitoring
monitoring

A novel picornavirus-like genome from transcriptome sequencing of sugar beet cyst nematode represents a new putative genus

Lin, J., Ye, R., Thekke-Veetil, T., Staton, M. E., Arelli, P. R., Bernard, E. C., Hewezi, T., Domier, L. L. & Hajimorad, M. R., Oct 2018, In : Journal of General Virology. 99, 10, p. 1418-1424 7 p., 001139.

Research output: Contribution to journalArticle

Picornaviridae
Beta vulgaris
Transcriptome
Cysts
Genome

A novel promoter from soybean that is active in a complex developmental pattern with and without its proximal 650 base pairs

Strömvik, M. V., Sundararaman, V. P. & Vodkin, L. O., Sep 1 1999, In : Plant Molecular Biology. 41, 2, p. 217-231 15 p.

Research output: Contribution to journalArticle

Soybeans
Arabidopsis
Base Pairing
promoter regions
soybeans

A novel receptor-like kinase involved in fungal pathogen defence in Arabidopsis thaliana

Ray, J., Yang, X., Kong, F., Guo, T., Deng, F., Clough, S. J. & Ramonell, K., Aug 2018, In : Journal of Phytopathology. 166, 7-8, p. 506-515 10 p.

Research output: Contribution to journalArticle

Plant Immunity
Arabidopsis
phosphotransferases (kinases)
Chitin
Phosphotransferases

An overnight chill induces a delayed inhibition of photosynthesis at midday in mango (Mangifera indica L.)

Allen, D. J., Ratner, K., Giller, Y. E., Gussakovsky, E. E., Shahak, Y. & Ort, D. R., Dec 1 2000, In : Journal of experimental botany. 51, 352, p. 1893-1902 10 p.

Research output: Contribution to journalArticle

Mangifera
Chills
Mangifera indica
Photosynthesis
Lycopersicon esculentum

Antagonism of Trichoderma-based biofungicides against Brazilian and North American isolates of Sclerotinia sclerotiorum and growth promotion of soybean

Macena, A. M. F., Kobori, N. N., Mascarin, G. M., Vida, J. B. & Hartman, G. L., Jan 1 2019, (Accepted/In press) In : BioControl.

Research output: Contribution to journalArticle

biopesticides
Sclerotinia sclerotiorum
growth promotion
Trichoderma
thiophanate-methyl
Ozone
Soybeans
ozone
developmental stages
soybeans
fish roe
Perches
Percidae
Etheostoma
Perciformes

Antimutagenic activity of chemical fractions isolated from a commercial soybean processing by-product

Plewa, M. J., Wagner, E. D., Berhow, M. A., Conway, A., Rayburn, A. L. & Anderson, D., May 25 1999, In : Teratogenesis Carcinogenesis and Mutagenesis. 19, 2, p. 121-135 15 p.

Research output: Contribution to journalArticle

Acetoxyacetylaminofluorene
Soybeans
Byproducts
Lymphocytes
2-amino-3-methylimidazo(4,5-f)quinoline

Antimutagenicity of three isomers of aminobenzoic acid in Salmonella typhimurium

Gichner, T., Voutsinas, G., Patrineli, A., Kappas, A. & Plewa, M. J., Sep 1 1994, In : Mutation Research Regular Papers. 309, 2, p. 201-210 10 p.

Research output: Contribution to journalArticle

Aminobenzoates
Salmonella typhimurium
4-Aminobenzoic Acid
ortho-Aminobenzoates
Nitrosoguanidines

Antioxidant and antimicrobial activities of crude sorghum extract

Kil, H. Y., Seong, E. S., Ghimire, B. K., Chung, I. M., Kwon, S. S., Goh, E. J., Heo, K., Kim, M. J., Lim, J. D., Lee, D. & Yu, C. Y., Aug 15 2009, In : Food chemistry. 115, 4, p. 1234-1239 6 p.

Research output: Contribution to journalArticle

Sorghum
Complex Mixtures
Sorghum (Poaceae)
Antioxidants
anti-infective agents

Antioxidant capacity of different broccoli (Brassica oleracea) genotypes using the oxygen radical absorbance capacity (ORAC) assay

Kurilich, A. C., Jeffery, E. H., Juvik, J. A., Wallig, M. A. & Klein, B. P., Aug 28 2002, In : Journal of Agricultural and Food Chemistry. 50, 18, p. 5053-5057 5 p.

Research output: Contribution to journalArticle

oxygen radical absorbance capacity
Brassica
broccoli
Brassica oleracea
Assays

Antisense-overexpression of the MsCOMT gene induces changes in lignin and total phenol contents in transgenic tobacco plants

Seong, E. S., Yoo, J. H., Lee, J. G., Kim, H. Y., Hwang, I. S., Heo, K., Kim, J. K., Lim, J. D., Sacks, E. J. & Yu, C. Y., Feb 1 2013, In : Molecular Biology Reports. 40, 2, p. 1979-1986 8 p.

Research output: Contribution to journalArticle

caffeate O-methyltransferase
Lignin
Genetically Modified Plants
Phenol
Tobacco

A Phylogenomic Census of Molecular Functions Identifies Modern Thermophilic Archaea as the Most Ancient Form of Cellular Life

Nasir, A., Kim, K. M. & Caetano-Anollés, G., Jan 1 2014, In : Archaea. 2014, 706468.

Research output: Contribution to journalArticle

Gene Ontology
Archaea
Censuses
census
genome

A phylogenomic data-driven exploration of viral origins and evolution

Nasir, A. & Caetano-Anollés, G., Jan 1 2015, In : Science Advances. 1, 8, 1500527.

Research output: Contribution to journalArticle

Viruses
Proteome
Replicon
Proteomics
Genome

A phylogenomic reconstruction of the protein world based on a genomic census of protein fold architecture

Wang, M., Boca, S. M., Kalelkar, R., Mittenthal, J. E. & Caetano-Anolles, G., Jan 1 2006, In : Complexity. 12, 1, p. 27-40 14 p.

Research output: Contribution to journalArticle

Censuses
Proteins
Protein Folding
Molecular Structure
Organizations

A physical map of the papaya genome with integrated genetic map and genome sequence

Yu, Q., Tong, E., Skelton, R. L., Bowers, J. E., Jones, M. R., Murray, J. E., Hou, S., Guan, P., Acob, R. A., Luo, M. C., Moore, P. H., Alam, M., Paterson, A. H. & Ming, R., Aug 7 2009, In : BMC genomics. 10, 1 p., 1471.

Research output: Contribution to journalArticle

Carica
Genome
Genetic Recombination
Sex Chromosomes
Genomics

A physical model-based method for retrieving urban land surface temperatures under cloudy conditions

Fu, P., Xie, Y., Weng, Q., Myint, S., Meacham-Hensold, K. & Bernacchi, C., Sep 1 2019, In : Remote Sensing of Environment. 230, 111191.

Research output: Contribution to journalArticle

physical models
surface temperature
land surface
Mean square error
Temperature
Salix
Climate
climate
Temperature
Photosynthesis

A point mutation in atpC1 raises the redox potential of the Arabidopsis chloroplast ATP synthase γ-subunit regulatory disulfide above the range of thioredoxin modulation

Wu, G., Ortiz-Flores, G., Ortiz-Lopez, A. & Ort, D. R., Dec 21 2007, In : Journal of Biological Chemistry. 282, 51, p. 36782-36789 8 p.

Research output: Contribution to journalArticle

Chloroplast Proton-Translocating ATPases
Thioredoxins
Point Mutation
Arabidopsis
Disulfides
Quantitative Trait Loci
Brassica
harvest date
broccoli
chromosome mapping

A population structure and genome-wide association analysis on the USDA soybean germplasm collection

Bandillo, N., Jarquin, D., Song, Q., Nelson, R., Cregan, P., Specht, J. & Lorenz, A., Nov 2015, In : Plant Genome. 8, 3

Research output: Contribution to journalArticle

United States Department of Agriculture
Genome-Wide Association Study
germplasm conservation
Soybeans
USDA

Apparent nitrogen recovery from fall-applied ammoniated phosphates and ammonium sulfate fertilizers

Fernández, F. G., Hoeft, R. G., Randall, G. W., Vetsch, J., Greer, K., Nafziger, E. D. & Villamil, M. B., Nov 1 2010, In : Agronomy Journal. 102, 6, p. 1674-1681 8 p.

Research output: Contribution to journalArticle

monoammonium phosphate
ammonium sulfate
field capacity
fertilizers
phosphates

Application of DRIFTS, 13C NMR, and py-MBMS to Characterize the Effects of Soil Science Oxidation Assays on Soil Organic Matter Composition in a Mollic Xerofluvent

Margenot, A. J., Calderón, F. J., Magrini, K. A. & Evans, R. J., Jul 1 2017, In : Applied Spectroscopy. 71, 7, p. 1506-1518 13 p.

Research output: Contribution to journalArticle

soil science
Molecular beams
Biological materials
molecular beams
Fourier transform infrared spectroscopy

Application of sequence-independent amplification (SIA) for the identification of RNA viruses in bioenergy crops

Agindotan, B. O., Ahonsi, M. O., Domier, L. L., Gray, M. E. & Bradley, C. A., Oct 1 2010, In : Journal of Virological Methods. 169, 1, p. 119-128 10 p.

Research output: Contribution to journalArticle

RNA Viruses
Panicum
Viruses
Mosaic Viruses
Tymoviridae

Application of thiophanate-methyl at different host growth stages for management of sclerotinia stem rot in soybean

Mueller, D. S., Bradley, C. A., Grau, C. R., Gaska, J. M., Kurle, J. E. & Pedersen, W. L., Oct 1 2004, In : Crop Protection. 23, 10, p. 983-988 6 p.

Research output: Contribution to journalArticle

thiophanate-methyl
Sclerotinia
stem rot
developmental stages
soybeans

Application of visible and near-infrared spectroscopy to classification of Miscanthus species

Jin, X., Chen, X., Xiao, L., Shi, C., Chen, L., Yu, B., Yi, Z., Yoo, J. H., Heo, K., Yu, C. Y., Yamada, T., Sacks, E. J. & Peng, J., Mar 2017, In : PloS one. 12, 4, e0171360.

Research output: Contribution to journalArticle

Miscanthus
Near infrared spectroscopy
Near-Infrared Spectroscopy
near-infrared spectroscopy
Least-Squares Analysis

Application timing and soil factors affect sulfentrazone phytotoxicity to two soybean (Glycine max (L.) Merr.) cultivars

Reiling, K. L., Simmons, F. W., Riechers, D. E. & Steckel, L. E., Mar 1 2006, In : Crop Protection. 25, 3, p. 230-234 5 p.

Research output: Contribution to journalArticle

sulfentrazone
application timing
phytotoxicity
Glycine max
soybeans

Applying an integrated refuge to manage western corn rootworm (Coleoptera: Chrysomelidae): Effects on survival, fitness, and selection pressure

Petzold-Maxwell, J. L., Alves, A. P., Estes, R. E., Gray, M. E., Meinke, L. J., Shields, E. J., Thompson, S. D., Tinsley, N. A. & Gassmann, A. J., Oct 21 2013, In : Journal of economic entomology. 106, 5, p. 2195-2207 13 p.

Research output: Contribution to journalArticle

Diabrotica virgifera virgifera
Chrysomelidae
refuge
Bacillus thuringiensis
fitness

A primitive Y chromosome in papaya marks incipient sex chromosome evolution

Liu, Z., Moore, P. H., Ma, H., Ackerman, C. M., Ragiba, M., Yu, Q., Pearl, H. M., Kim, M. S., Charlton, J. W., Stiles, J. I., Zee, F. T., Paterson, A. H. & Ming, R., Jan 22 2004, In : Nature. 427, 6972, p. 348-352 5 p.

Research output: Contribution to journalArticle

Carica
Sex Chromosomes
Y Chromosome
Genetic Recombination
Mutation

A process-based model to predict the effects of climatic change on leaf isoprene emission rates

Martin, M. J., Stirling, C. M., Humphries, S. W. & Long, S. P., Jul 1 2000, In : Ecological Modelling. 131, 2-3, p. 161-174 14 p.

Research output: Contribution to journalArticle

isoprene
climate change
carbon dioxide
photon flux density
temperature

A public–industry partnership for enhancing corn nitrogen research and datasets: Project description, methodology, and outcomes

Kitchen, N. R., Shanahan, J. F., Ransom, C. J., Bandura, C. J., Bean, G. M., Camberato, J. J., Carter, P. R., Clark, J. D., Ferguson, R. B., Fernández, F. G., Franzen, D. W., Laboski, C. A. M., Nafziger, E. D., Qing, Z., Sawyer, J. E. & Shafer, M., Sep 1 2017, In : Agronomy Journal. 109, 5, p. 2371-2388 18 p.

Research output: Contribution to journalArticle

corn
nitrogen
weather
Land Grant universities
soil

A public program to evaluate commercial soybean cultivars for pathogen and pest resistance

Chawla, S., Bowen, C. R., Slaminko, T. L., Hobbs, H. A. & Hartman, G. L., Apr 16 2013, In : Plant disease. 97, 5, p. 568-578 11 p.

Research output: Contribution to journalArticle

pest resistance
soybeans
pathogens
cultivars
seed industry
transposons
Glycine max
flavonoids
soybeans
alleles

A putative defective interfering RNA from Bean pod mottle virus

Sundararaman, V. P., Stromvik, M. V. & Vodkin, L. O., Jan 1 2000, In : Plant disease. 84, 12, p. 1309-1313 5 p.

Research output: Contribution to journalArticle

Bean pod mottle virus
RNA
soybeans
pods
Comovirus
Boidae
Neuropeptides
Pipelines
Cations
Genes

A quantitative assay for Amaranthus palmeri identification

Murphy, B. P., Plewa, D. E., Phillippi, E., Bissonnette, S. M. & Tranel, P. J., Nov 2017, In : Pest Management Science. 73, 11, p. 2221-2224 4 p.

Research output: Contribution to journalArticle

Amaranthus palmeri
assays
Amaranthus
quantitative polymerase chain reaction
Conservation Reserve Program
Miscanthus giganteus
Panicum virgatum
energy crops
Crops
Biomass

Aquatic herbicides and herbicide contaminants: In vitro cytotoxicity and cell-cycle analysis

Freeman, J. L. & Rayburn, A. L., May 29 2006, In : Environmental Toxicology. 21, 3, p. 256-263 8 p.

Research output: Contribution to journalArticle

Herbicides
Cytotoxicity
herbicide
Cell Cycle
Diquat

Arabidopsis transcript and metabolite profiles: Ecotype-specific responses to open-air elevated [CO2]

Li, P., Ainsworth, E. A., Leakey, A. D. B., Ulanov, A., Lozovaya, V., Ort, D. R. & Bohnert, H. J., Nov 1 2008, In : Plant, Cell and Environment. 31, 11, p. 1673-1687 15 p.

Research output: Contribution to journalArticle

Ecotype
ecotypes
Arabidopsis
carbon dioxide
metabolites

Arabidopsis TTR1 causes LRR-dependent lethal systemic necrosis, rather than systemic acquired resistance, to tobacco ringspot virus

Nam, M., Koh, S., Kim, S. U., Domier, L. L., Jeon, J. H., Kim, H. G., Lee, S. H., Bent, A. F. & Moon, J. S., Nov 1 2011, In : Molecules and Cells. 32, 5, p. 421-429 9 p.

Research output: Contribution to journalArticle

Nepovirus
Ecotype
Arabidopsis
Necrosis
Phenotype

Arable weeds, cover crops, and tillage drive soil microbial community composition in organic cropping systems

Wortman, S. E., Drijber, R. A., Francis, C. A. & Lindquist, J. L., Oct 1 2013, In : Applied Soil Ecology. 72, p. 232-241 10 p.

Research output: Contribution to journalArticle

cover crop
cover crops
tillage
community composition
weed

A rapid chemiluminescent detection method for barley yellow dwarf virus

Fouly, H. M., Domier, L. L. & D'Arcy, C. J., Sep 1992, In : Journal of Virological Methods. 39, 3, p. 291-298 8 p.

Research output: Contribution to journalArticle

Luteovirus
X-Ray Film
Nylons
Complementary DNA
Enzyme-Linked Immunosorbent Assay

Archaeophytopathology of Phakopsora pachyrhizi, the soybean rust pathogen

Haudenshield, J. S. & Hartman, G. L., May 1 2015, In : Plant disease. 99, 5, p. 575-579 5 p.

Research output: Contribution to journalArticle

Phakopsora pachyrhizi
soybean rust
pathogens
herbaria
DNA

A realistic meteorological assessment of perennial biofuel crop deployment: a Southern Great Plains perspective

Wagner, M., Wang, M., Miguez-Macho, G., Miller, J., VanLoocke, A., Bagley, J. E., Bernacchi, C. J. & Georgescu, M., Jun 2017, In : GCB Bioenergy. 9, 6, p. 1024-1041 18 p.

Research output: Contribution to journalArticle

energy crops
Biofuels
biofuel
bioenergy
Crops
tandem repeat sequences
flavonoids
soybeans
flowers
loci

Areawide suppression of European corn borer with Bt maize reaps savings to non-Bt maize growers

Hutchison, W. D., Burkness, E. C., Mitchell, P. D., Moon, R. D., Leslie, T. W., Fleischer, S. J., Abrahamson, M., Hamilton, K. L., Steffey, K. L., Gray, M. E., Hellmich, R. L., Kaster, L. V., Hunt, T. E., Wright, R. J., Pecinovsky, K., Rabaey, T. L., Flood, B. R. & Raun, E. S., Oct 8 2010, In : Science. 330, 6001, p. 222-225 4 p.

Research output: Contribution to journalArticle

Bacillus thuringiensis
Zea mays
Agriculture
Insects
Motivation