Research Output 1975 2020

Article

Analysis of the genotoxicity of municipal solid waste incinerator ash

Silkowski, M. A., Smith, S. R. & Plewa, M. J., Jan 15 1992, In : Science of the Total Environment, The. 111, 2-3, p. 109-124 16 p.

Research output: Contribution to journalArticle

Ashes
Refuse incinerators
Municipal solid waste
genotoxicity
municipal solid waste
agricultural management
drainage water
Phosphorus
Nutrients
Drainage

Analysis of xylem exudate by ion chromatography: Influence of nitrogen and residue management on corn exudate composition

Teyker, R. H., Galerani, P. R. & Nafziger, E. D., May 1 1991, In : Communications in Soil Science and Plant Analysis. 22, 7-8, p. 785-793 9 p.

Research output: Contribution to journalArticle

ion chromatography
ion exchange chromatography
xylem
maize
ionic composition

Analytical workflow profiling gene expression in murine macrophages

Nixon, S. E., Gonzalez-Peña, D., Lawson, M. A., McCusker, R. H., Hernandez, A. G., O'Connor, J. C., Dantzer, R., Kelley, K. W. & Rodriguez-Zas, S. L., Apr 25 2015, In : Journal of Bioinformatics and Computational Biology. 13, 2, 1550010.

Research output: Contribution to journalArticle

Workflow
Macrophages
Gene Expression Profiling
Gene expression
RNA

An analysis of ozone damage to historical maize and soybean yields in the United States

McGrath, J. M., Betzelberger, A. M., Wang, S., Shook, E., Zhu, X. G., Long, S. P. & Ainsworth, E. A., Nov 17 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 46, p. 14390-14395 6 p.

Research output: Contribution to journalArticle

Ozone
Soybeans
Zea mays
Rain
Food Supply

An analysis of survey data by size of the breeding herd for the reproductive management practices of North American sow farms

Knox, R. V., Rodriguez-Zas, S. L., Sloter, N. L., McNamara, K. A., Gall, T. J., Levis, D. G., Safranski, T. J. & Singleton, W. L., Jan 1 2013, In : Journal of animal science. 91, 1, p. 433-445 13 p.

Research output: Contribution to journalArticle

Practice Management
Breeding
sows
herds
farms

An approach of orthology detection from homologous sequences under minimum evolution.

Kim, K. M., Sung, S., Caetano-Anollés, G., Han, J. Y. & Kim, H., Oct 2008, In : Nucleic acids research. 36, 17, p. e110

Research output: Contribution to journalArticle

Sequence Homology
Phylogeny
Genomics
Costs and Cost Analysis
Sensitivity and Specificity

An assessment of the performance of the logistic mixed model for analyzing binary traits in maize and sorghum diversity panels

Shenstone, E., Cooper, J., Rice, B., Bohn, M., Jamann, T. M. & Lipka, A. E., Nov 2018, In : PloS one. 13, 11, e0207752.

Research output: Contribution to journalArticle

Sorghum
Zea mays
Logistics
Logistic Models
Genome-Wide Association Study

An assessment of true and false positive detection rates of stepwise epistatic model selection as a function of sample size and number of markers

Chen, A. H., Ge, W., Metcalf, W., Jakobsson, E., Mainzer, L. S. & Lipka, A. E., May 1 2019, In : Heredity. 122, 5, p. 660-671 12 p.

Research output: Contribution to journalArticle

Sample Size
Gene Frequency
Zea mays
Nucleotides
Genome

Anastomosis of germ tubes and migration of nuclei in germ tube networks of the soybean rust pathogen, Phakopsora pachyrhizi

Vittal, R., Yang, H. C. & Hartman, G. L., Feb 2012, In : European Journal of Plant Pathology. 132, 2, p. 163-167 5 p.

Research output: Contribution to journalArticle

Phakopsora pachyrhizi
soybean rust
germ tube
pathogens
parasexual cycle

An atypical N-ethylmaleimide sensitive factor enables the viability of nematode-resistant Rhg1 soybeans

Bayless, A. M., Zapotocny, R. W., Grunwald, D. J., Amundson, K. K., Diers, B. W. & Bent, A. F., May 8 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 19, p. E4512-E4521

Research output: Contribution to journalArticle

N-Ethylmaleimide-Sensitive Proteins
Soybeans
Glycine
Housekeeping
Disease Resistance

Ancestrality and mosaicism of giant viruses supporting the definition of the fourth TRUC of microbes

Colson, P., Levasseur, A., Scola, B. L., Sharma, V., Nasir, A., Pontarotti, P., Caetano-Anollés, G. & Raoult, D., Nov 27 2018, In : Frontiers in Microbiology. 9, NOV, 2668.

Research output: Contribution to journalArticle

Mosaicism
Archaea
Eukaryota
Bacteria
Genes

An efficient method for measuring copy number variation applied to improvement of nematode resistance in soybean

Lee, T. G., Diers, B. W. & Hudson, M., Oct 1 2016, In : Plant Journal. 88, 1, p. 143-153 11 p.

Research output: Contribution to journalArticle

Soybeans
Heterodera glycines
Nematoda
soybeans
assays

A nematode demographics assay in transgenic roots reveals no significant impacts of the Rhg1 locus LRR-Kinase on soybean cyst nematode resistance

Melito, S., Heuberger, A. L., Cook, D., Diers, B. W., MacGuidwin, A. E. & Bent, A. F., Jun 9 2010, In : BMC Plant Biology. 10, 104.

Research output: Contribution to journalArticle

Heterodera glycines
phosphotransferases (kinases)
demographic statistics
leucine
Nematoda

An evaluation of new and established methods to determine T-DNA copy number and homozygosity in transgenic plants

Głowacka, K., Kromdijk, J., Leonelli, L., Niyogi, K. K., Clemente, T. E. & Long, S. P., Apr 1 2016, In : Plant Cell and Environment. 39, 4, p. 908-917 10 p.

Research output: Contribution to journalArticle

Genetically Modified Plants
Southern Blotting
homozygosity
Southern blotting
transgenic plants

An evaluation of the genotoxic properties of herbicides following plant and animal activation

Plewa, M. J., Wagner, E. D., Gentile, G. J. & Gentile, J. M., Jun 1984, In : Mutation Research/Genetic Toxicology. 136, 3, p. 233-245 13 p.

Research output: Contribution to journalArticle

Atrazine
Herbicides
Assays
Animals
Chemical activation

An evaluation of the genotoxic properties of insecticides following plant and animal activation

Gentile, J. M., Gentile, G. J., Bultman, J., Sechriest, R., Wagner, E. D. & Plewa, M. J., Mar 1982, In : Mutation Research/Genetic Toxicology. 101, 1, p. 19-29 11 p.

Research output: Contribution to journalArticle

Heptachlor
Chlordan
Fonofos
Insecticides
Assays

A new assessment of the cytotoxicity and genotoxicity of drinking water disinfection by-products

Kargalioglu, Y., McMillan, B. J., Minear, R. A. & Plewa, M. J., 2000, In : ACS Symposium Series. 761, p. 16-27 12 p.

Research output: Contribution to journalArticle

Disinfection
Cytotoxicity
Potable water
Drinking Water
Byproducts
dry milling
flaking
coproducts
corn
cultivars

A new soybean aphid (Hemiptera: Aphididae) biotype identified

Hill, C. B., Crull, L., Herman, T. K., Voegtlin, D. J. & Hartman, G. L., Apr 1 2010, In : Journal of economic entomology. 103, 2, p. 509-515 7 p.

Research output: Contribution to journalArticle

biotype
Aphididae
biotypes
soybean
Hemiptera

An extraction method for the determination of dimethyl sulfide in cooked corn

Breeden, D. C. & Juvik, J. A., Jun 1992, In : Journal of Food Composition and Analysis. 5, 2, p. 134-138 5 p.

Research output: Contribution to journalArticle

dimethyl sulfide
Zea mays
corn
headspace analysis
Genotype

An improved approach for measuring the impact of multiple CO2 conductances on the apparent photorespiratory CO2 compensation point through slope-intercept regression

Walker, B. J., Skabelund, D. C., Busch, F. A. & Ort, D. R., Jun 1 2016, In : Plant Cell and Environment. 39, 6, p. 1198-1203 6 p.

Research output: Contribution to journalArticle

Photosynthesis
photosynthesis
Ribulose-Bisphosphate Carboxylase
ribulose 1,5-diphosphate
ribulose-bisphosphate carboxylase

An improved technique for culture of rice panicles

Lee, H. J., Seebauer, J. R. & Below, F. E., Jan 1 2000, In : Plant Cell, Tissue and Organ Culture. 60, 1, p. 55-60 6 p.

Research output: Contribution to journalArticle

inflorescences
rice
sucrose
fluorescent dyes
nitrogen

An integrated cytogenetic and physical map reveals unevenly distributed recombination spots along the papaya sex chromosomes

Wai, C. M., Moore, P. H., Paull, R. E., Ming, R. R. & Yu, Q., Aug 1 2012, In : Chromosome Research. 20, 6, p. 753-767 15 p.

Research output: Contribution to journalArticle

Carica
Sex Chromosomes
Cytogenetics
Genetic Recombination
Centromere

An investigation of bone marrow and testicular cells in vivo using the comet assay

Anderson, D., Dhawan, A., Yu, T. W. & Plewa, M. J., Oct 1 1996, In : Mutation Research - Genetic Toxicology. 370, 3-4, p. 159-174 16 p.

Research output: Contribution to journalArticle

Comet Assay
Bone Marrow Cells
Assays
Bone
Ethyl Methanesulfonate

An investigation of some Turkish herbal medicines in Salmonella typhimurium and in the COMET assay in human lymphocytes

Basaran, A. A., Yu, T. W., Plewa, M. J. & Anderson, D., Sep 27 1996, In : Teratogenesis Carcinogenesis and Mutagenesis. 16, 2, p. 125-138 14 p.

Research output: Contribution to journalArticle

Salmonella
Lymphocytes
Herbal Medicine
Salmonella typhimurium
Medicinal Plants

An investigation of widespread ozone damage to the soybean crop in the upper Midwest determined from ground-based and satellite measurements

Fishman, J., Creilson, J. K., Parker, P. A., Ainsworth, E., Vining, G. G., Szarka, J., Booker, F. L. & Xu, X., Jun 1 2010, In : Atmospheric Environment. 44, 18, p. 2248-2256 9 p.

Research output: Contribution to journalArticle

soybean
ozone
damage
crop
open-top chamber

An investigation to enhance understanding of the stimulation of weed seedling emergence by soil disturbance

Schutte, B. J., Tomasek, B. J., Davis, A. S., Andersson, L., Benoit, D. L., Cirujeda, A., Dekker, J., Forcella, F., Gonzalez-Andujar, J. L., Graziani, F., Murdoch, A. J., Neve, P., Rasmussen, I. A., Sera, B., Salonen, J., Tei, F., Tørresen, K. S. & Urbano, J. M., Feb 1 2014, In : Weed Research. 54, 1, p. 1-12 12 p.

Research output: Contribution to journalArticle

seedling emergence
weed
weeds
disturbance
soil

An in vitro approach to investigate medicinal chemical synthesis by three herbal plants

Smith, M. A. L., Kobayashi, H., Gawienowski, M. & Briskin, D. P., Jan 1 2002, In : Plant Cell, Tissue and Organ Culture. 70, 1, p. 105-111 7 p., 405964.

Research output: Contribution to journalArticle

kava
hypericin
cell culture
phytopharmaceuticals
synthesis

An in vitro method for screening for the presence of the pat-2 gene in tomatoes (Lycopersicon esculentum Mill.)

Young, T. E., Juvik, J. A., Sullivan, J. G. & Skirvin, R. M., Jan 1 1990, In : Plant Cell Reports. 8, 9, p. 538-541 4 p.

Research output: Contribution to journalArticle

Solanum lycopersicum var. lycopersicum
tomatoes
screening
heterozygosity
plant ovary

An In Vitro Method to Rescue Embryos of Horseradish, a Reputedly Sterile Plant

Ozgur, M., Shehata, A. M., Skirvin, R. M., Norton, M. A., Mulwa, R. M. S., Uchanski, M., Hamblin, A. M. & Babadoost, M., Dec 2 2004, In : Journal of Vegetable Crop Production. 10, 2, p. 99-105 7 p.

Research output: Contribution to journalArticle

Armoracia
horseradish
embryo (plant)
Embryonic Structures
Seedlings
Ozone
Photosynthesis
Soybeans
ozone
photosynthesis

Annotation of protein domains reveals remarkable conservation in the functional make up of proteomes across superkingdoms

Nasir, A., Naeem, A., Khan, M. J., Lopez-Nicora, H. D. & Caetano-Anollés, G., Dec 1 2011, In : Genes. 2, 4, p. 869-911 43 p.

Research output: Contribution to journalArticle

Proteome
Genome
Bacteria
Nanoarchaeota
Proteins
Nonlinear Dynamics
Xenobiotics
foliar application
xenobiotics
simulation models
Nonlinear Dynamics
plant characteristics
Xenobiotics
foliar application
xenobiotics

A nonlinear dynamic simulation model for xenobiotic transport and whole plant allocation following foliar application I. Conceptual foundation for model development

Satchivi, N. M., Stoller, E. W., Wax, L. M. & Briskin, D. P., Jan 1 2000, In : Pesticide Biochemistry and Physiology. 68, 2, p. 67-84 18 p.

Research output: Contribution to journalArticle

Phloem
Nonlinear Dynamics
Xenobiotics
foliar application
xenobiotics

A nonlinear dynamic simulation model for xenobiotic transport and whole plant allocation following foliar application II. Model validation

Satchivi, N. M., Stoller, E. W., Wax, L. M. & Briskin, D. P., Jan 1 2000, In : Pesticide Biochemistry and Physiology. 68, 2, p. 85-95 11 p.

Research output: Contribution to journalArticle

Nonlinear Dynamics
model validation
Herbicides
Xenobiotics
foliar application

A novel, multiplexed, probe-based quantitative PCR assay for the soybean rootand stem-rot pathogen, Phytophthora sojae, utilizes its transposable element

Haudenshield, J. S., Song, J. Y. & Hartman, G. L., Apr 2017, In : PloS one. 12, 4, e0176567.

Research output: Contribution to journalArticle

Phytophthora
Phytophthora sojae
stem rot
DNA Transposable Elements
Pathogens

A novel dynamic impact approach (DIA) for functional analysis of time-course omics studies: Validation using the bovine mammary transcriptome

Bionaz, M., Periasamy, K., Rodriguez-Zas, S. L., Hurley, W. L. & Loor, J. J., Mar 16 2012, In : PloS one. 7, 3, e32455.

Research output: Contribution to journalArticle

Functional analysis
Validation Studies
Transcriptome
transcriptome
breasts

A novel flavivirus in the soybean cyst nematode

Bekal, S., Domier, L. L., Gonfa, B., McCoppin, N. K., Lambert, K. N. & Bhalerao, K., Jun 2014, In : Journal of General Virology. 95, PART 6, p. 1272-1280 9 p.

Research output: Contribution to journalArticle

Flavivirus
Soybeans
Cysts
Viruses
Pestivirus

A novel high-throughput multi-parameter flow cytometry based method for monitoring and rapid characterization of microbiome dynamics in anaerobic systems

Dhoble, A. S., Bekal, S., Dolatowski, W., Yanz, C., Lambert, K. N. & Bhalerao, K. D., Nov 1 2016, In : Bioresource Technology. 220, p. 566-571 6 p.

Research output: Contribution to journalArticle

Flow cytometry
flow cytometry
Throughput
Monitoring
monitoring

A novel picornavirus-like genome from transcriptome sequencing of sugar beet cyst nematode represents a new putative genus

Lin, J., Ye, R., Thekke-Veetil, T., Staton, M. E., Arelli, P. R., Bernard, E. C., Hewezi, T., Domier, L. L. & Hajimorad, M. R., Oct 2018, In : Journal of General Virology. 99, 10, p. 1418-1424 7 p., 001139.

Research output: Contribution to journalArticle

Picornaviridae
Beta vulgaris
Transcriptome
Cysts
Genome

A novel promoter from soybean that is active in a complex developmental pattern with and without its proximal 650 base pairs

Strömvik, M. V., Sundararaman, V. P. & Vodkin, L. O., Sep 1 1999, In : Plant Molecular Biology. 41, 2, p. 217-231 15 p.

Research output: Contribution to journalArticle

Soybeans
Arabidopsis
Base Pairing
promoter regions
soybeans

A novel receptor-like kinase involved in fungal pathogen defence in Arabidopsis thaliana

Ray, J., Yang, X., Kong, F., Guo, T., Deng, F., Clough, S. J. & Ramonell, K., Aug 2018, In : Journal of Phytopathology. 166, 7-8, p. 506-515 10 p.

Research output: Contribution to journalArticle

Plant Immunity
Arabidopsis
phosphotransferases (kinases)
Chitin
Phosphotransferases

An overnight chill induces a delayed inhibition of photosynthesis at midday in mango (Mangifera indica L.)

Allen, D. J., Ratner, K., Giller, Y. E., Gussakovsky, E. E., Shahak, Y. & Ort, D. R., Dec 1 2000, In : Journal of experimental botany. 51, 352, p. 1893-1902 10 p.

Research output: Contribution to journalArticle

Mangifera
Chills
Mangifera indica
Photosynthesis
Lycopersicon esculentum

Antagonism of Trichoderma-based biofungicides against Brazilian and North American isolates of Sclerotinia sclerotiorum and growth promotion of soybean

Macena, A. M. F., Kobori, N. N., Mascarin, G. M., Vida, J. B. & Hartman, G. L., Jan 1 2019, (Accepted/In press) In : BioControl.

Research output: Contribution to journalArticle

biopesticides
Sclerotinia sclerotiorum
growth promotion
Trichoderma
thiophanate-methyl
Ozone
Soybeans
ozone
developmental stages
soybeans
fish roe
Perches
Percidae
Etheostoma
Perciformes

Antimutagenic activity of chemical fractions isolated from a commercial soybean processing by-product

Plewa, M. J., Wagner, E. D., Berhow, M. A., Conway, A., Rayburn, A. L. & Anderson, D., May 25 1999, In : Teratogenesis Carcinogenesis and Mutagenesis. 19, 2, p. 121-135 15 p.

Research output: Contribution to journalArticle

Acetoxyacetylaminofluorene
Soybeans
Byproducts
Lymphocytes
2-amino-3-methylimidazo(4,5-f)quinoline

Antimutagenicity of three isomers of aminobenzoic acid in Salmonella typhimurium

Gichner, T., Voutsinas, G., Patrineli, A., Kappas, A. & Plewa, M. J., Sep 1 1994, In : Mutation Research Regular Papers. 309, 2, p. 201-210 10 p.

Research output: Contribution to journalArticle

Aminobenzoates
Salmonella typhimurium
4-Aminobenzoic Acid
ortho-Aminobenzoates
Nitrosoguanidines