Research Output 1975 2020

Article

A high-performance and in-season classification system of field-level crop types using time-series Landsat data and a machine learning approach

Cai, Y., Guan, K., Peng, J., Wang, S., Seifert, C., Wardlow, B. & Li, Z., Jun 1 2018, In : Remote Sensing of Environment. 210, p. 35-47 13 p.

Research output: Contribution to journalArticle

artificial intelligence
Landsat
Crops
Learning systems
Time series

A high-throughput apple SNP genotyping platform using the GoldenGate™ assay

Khan, M. A., Han, Y., Zhao, Y. & Korban, S. S., Feb 25 2012, In : Gene. 494, 2, p. 196-201 6 p.

Research output: Contribution to journalArticle

Malus
Single Nucleotide Polymorphism
Expressed Sequence Tags
Genotype
Alleles

A high throughput soybean gene identification system developed using Soybean Yellow Common Mosaic Virus (SYCMV)

Seo, E. Y., Cho, S., Moon, J. S., Gotoh, T., Kim, H. G., Domier, L. L., Lim, S., Kim, K. H., Moon, J. K., Hammond, J., Lim, H. S. & Song, K. H., Feb 1 2015, In : Journal of the Faculty of Agriculture, Kyushu University. 60, 1, p. 127-138 12 p.

Research output: Contribution to journalArticle

Mosaic Viruses
Soybeans
soybeans
viruses
Genes

Air-propelled abrasive grits reduce weed abundance and increase yields in organic vegetable production

Wortman, S. E., Nov 1 2015, In : Crop Protection. 77, p. 157-162 6 p.

Research output: Contribution to journalArticle

abrasives
vegetable growing
weeds
weed control
air

A kochia (Kochia scoparia) biotype resistant to triazine and ALS-inhibiting herbicides

Foes, M. J., Liu, L., Vigue, G., Stoller, E. W., Wax, L. M. & Tranel, P. J., Jan 1 1999, In : Weed Science. 47, 1, p. 20-27 8 p.

Research output: Contribution to journalArticle

Bassia scoparia
Bassia (Amaranthaceae)
acetolactate synthase
triazines
biotypes

A lack of nuclear DNA content variability among wheat near isolines differing in aluminium response

Wetzel, J. B., Aref, S., Baligar, V. C. & Rayburn, A. L., Jun 1999, In : Annals of botany. 83, 6, p. 725-728 4 p.

Research output: Contribution to journalArticle

isogenic lines
nuclear genome
aluminum
wheat
flow cytometry

Alfalfa controls nodulation during the onset of Rhizbium-induced cortical cell division

Caetano-Anollés, G. & Gresshoff, P. M., Feb 1991, In : Plant physiology. 95, 2, p. 366-373 8 p.

Research output: Contribution to journalArticle

Medicago sativa
nodulation
Cell Division
cell division
alfalfa

Aligning Product Chemistry and Soil Context for Agronomic Reuse of Human-Derived Resources

Trimmer, J. T., Margenot, A. J., Cusick, R. & Guest, J. S., Jun 4 2019, In : Environmental Science and Technology. 53, 11, p. 6501-6510 10 p.

Research output: Contribution to journalArticle

Soils
Sanitation
Nutrients
struvite
sanitation

Alignment of genetic maps and QTLs between inter- and intra-specific sorghum populations

Feltus, F. A., Hart, G. E., Schertz, K. F., Casa, A. M., Kresovich, S., Abraham, S., Klein, P. E., Brown, P. J. & Paterson, A. H., May 1 2006, In : Theoretical and Applied Genetics. 112, 7, p. 1295-1305 11 p.

Research output: Contribution to journalArticle

Sorghum
Sorghum (Poaceae)
quantitative trait loci
Sorghum bicolor
Population

A limited role for carbonic anhydrase in C4 photosynthesis as revealed by a ca1ca2 double mutant in maize

Studer, A. J., Gandin, A., Kolbe, A. R., Wang, L., Cousins, A. B. & Brutnell, T. P., Jun 2014, In : Plant physiology. 165, 2, p. 608-617 10 p.

Research output: Contribution to journalArticle

C4 photosynthesis
Carbonic Anhydrases
carbonate dehydratase
Photosynthesis
Zea mays

Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.

Zhang, J., Zhang, X., Tang, H., Zhang, Q., Hua, X., Ma, X., Zhu, F., Jones, T., Zhu, X., Bowers, J., Wai, C. M., Zheng, C., Shi, Y., Chen, S., Xu, X., Yue, J., Nelson, D. R., Huang, L., Li, Z., Xu, H. & 88 others, Zhou, D., Wang, Y., Hu, W., Lin, J., Deng, Y., Pandey, N., Mancini, M., Zerpa, D., Nguyen, J. K., Wang, L., Yu, L., Xin, Y., Ge, L., Arro, J., Han, J. O., Chakrabarty, S., Pushko, M., Zhang, W., Ma, Y., Ma, P., Lv, M., Chen, F., Zheng, G., Xu, J., Yang, Z., Deng, F., Chen, X., Liao, Z., Zhang, X., Lin, Z., Lin, H., Yan, H., Kuang, Z., Zhong, W., Liang, P., Wang, G., Yuan, Y., Shi, J., Hou, J., Lin, J., Jin, J., Cao, P., Shen, Q., Jiang, Q., Zhou, P., Ma, Y., Zhang, X., Xu, R., Liu, J., Zhou, Y., Jia, H., Ma, Q., Qi, R., Zhang, Z., Fang, J., Fang, H., Song, J., Wang, M., Dong, G., Wang, G., Chen, Z., Ma, T., Liu, H., Dhungana, S. R., Huss, S. E., Yang, X., Sharma, A., Trujillo, J. H., Martinez, M. C., Hudson, M., Riascos, J. J., Schuler, M., Chen, L. Q., Braun, D. M., Li, L., Yu, Q., Wang, J., Wang, K., Schatz, M. C., Heckerman, D., Van Sluys, M. A., Souza, G. M., Moore, P. H., Sankoff, D., VanBuren, R., Paterson, A. H., Nagai, C. & Ming, R., Nov 1 2018, In : Nature Genetics. 50, 11, p. 1565-1573 9 p.

Research output: Contribution to journalArticle

Saccharum
Alleles
Genome
Chromosomes, Human, Pair 4
Disease Resistance

Allelic variants in the PRR37 gene and the human-mediated dispersal and diversification of sorghum

Klein, R. R., Miller, F. R., Dugas, D. V., Brown, P. J., Burrell, A. M. & Klein, P. E., Sep 20 2015, In : Theoretical and Applied Genetics. 128, 9, p. 1669-1683 15 p.

Research output: Contribution to journalArticle

Sorghum
Regulator Genes
alleles
genes
Alleles

ALLMAPS: Robust scaffold ordering based on multiple maps

Tang, H., Zhang, X., Miao, C., Zhang, J., Ming, R., Schnable, J. C., Schnable, P. S., Lyons, E. & Lu, J., Jan 13 2015, In : Genome biology. 16, 1, 3.

Research output: Contribution to journalArticle

genome assembly
Genome
genome
Chromosomes
chromosomes

Allosteric Control of a Plant Receptor Kinase through S-Glutathionylation

Moffett, A. S., Bender, K. W., Huber, S. C. & Shukla, D., Dec 5 2017, In : Biophysical journal. 113, 11, p. 2354-2363 10 p.

Research output: Contribution to journalArticle

Protein S
Protein Kinases
Oxidation-Reduction
Phosphotransferases
Brassinosteroids

A low-cost, high-throughput polyacrylamide gel electrophoresis system for genotyping with microsateilite DNA markers

Wang, D., Shi, J., Carlson, S. R., Cregan, P. B., Ward, R. W. & Diers, B. W., Sep 1 2003, In : Crop Science. 43, 5, p. 1828-1832 5 p.

Research output: Contribution to journalArticle

genotyping
polyacrylamide gel electrophoresis
gels
genetic markers
electrophoresis

Alteration of maize kernel phytic acid levels by recurrent selection for protein and oil

Raboy, V., Below, F. E. & Dickinson, D. B., Jan 1 1989, In : Journal of Heredity. 80, 4, p. 311-315 5 p.

Research output: Contribution to journalArticle

Phytic Acid
Zea mays
Oils
Proteins
Nutritive Value

Alteration of mammalian-cell toxicity of pesticides by structural iron(II) in ferruginous smectite

Sorensen, K. C., Stucki, J. W., Warner, R. E. & Plewa, M. J., Aug 15 2004, In : Environmental Science and Technology. 38, 16, p. 4383-4389 7 p.

Research output: Contribution to journalArticle

Pesticides
smectite
Toxicity
Iron
pesticide

Altered Belowground Carbon Cycling Following Land-Use Change to Perennial Bioenergy Crops

Anderson-Teixeira, K. J., Masters, M. D., Black, C. K., Zeri, M., Hussain, M. Z., Bernacchi, C. J. & DeLucia, E. H., Jan 7 2013, In : Ecosystems. 16, 3, p. 508-520 13 p.

Research output: Contribution to journalArticle

energy crops
bioenergy
Land use
land use change
Crops

Altered fatty acid concentrations in a temperature-sensitive mutant of Saccharomyces cerevisiae defective in cell division and respiration

Gentile, J. M. & Plewa, M. J., Jun 1975, In : Plant Science Letters. 4, 6, p. 343-352 10 p.

Research output: Contribution to journalArticle

Cell Respiration
cell respiration
Cell Division
Saccharomyces cerevisiae
cell division

Altered physiological function, not structure, drives increased radiation-use efficiency of soybean grown at elevated CO2

Rascher, U., Biskup, B., Leakey, A., McGrath, J. M. & Ainsworth, E., Jun 24 2010, In : Photosynthesis research. 105, 1, p. 15-25 11 p.

Research output: Contribution to journalArticle

radiation use efficiency
Soybeans
carbon dioxide
Radiation
soybeans

Alternative sigma factor RpoN and its modulation protein YhbH are indispensable for Erwinia amylovora virulence

Ancona, V., Li, W. & Zhao, Y., Jan 1 2014, In : Molecular Plant Pathology. 15, 1, p. 58-66 9 p.

Research output: Contribution to journalArticle

Erwinia amylovora
sigma factors
Sigma Factor
pathogenicity
hypersensitive response

Alternative to hand-weeding volunteer potato (Solanum tuberosum) in carrot (Daucus carota)

Williams, M. M. & Boydston, R. A., Oct 1 2005, In : Weed Technology. 19, 4, p. 1050-1055 6 p.

Research output: Contribution to journalArticle

Daucus carota
Solanum tuberosum
carrots
volunteers
weed control

A LysM receptor-like kinase plays a critical role in chitin signaling and fungal resistance in Arabidopsis

Wan, J., Zhang, X. C., Neece, D., Ramonell, K. M., Clough, S., Kim, S. Y., Stacey, M. G. & Stacey, G., Feb 1 2008, In : Plant Cell. 20, 2, p. 471-481 11 p.

Research output: Contribution to journalArticle

Chitin
chitin
Arabidopsis
phosphotransferases (kinases)
Phosphotransferases
Prolamins
Zein
Leucine Zippers
Zinc Fingers
Zea mays

Amaranthus hybridus can be pollinated frequently by A. tuberculatus under field conditions

Trucco, F., Jeschke, M. R., Rayburn, A. L. & Tranel, P. J., Jan 1 2005, In : Heredity. 94, 1, p. 64-70 7 p.

Research output: Contribution to journalArticle

Amaranthus
Herbicides
Herbicide Resistance
Alleles
Mutation Rate

Amaranthus hybridus populations resistant to triazine and acetolactate synthase-inhibiting herbicides

Maertens, K. D., Sprague, C. L., Tranel, P. J. & Hines, R. A., Feb 1 2004, In : Weed Research. 44, 1, p. 21-26 6 p.

Research output: Contribution to journalArticle

Amaranthus hybridus
acetolactate synthase
triazines
triazine
herbicide

A meta-analysis of elevated [CO2] effects on soybean (Glycine max) physiology, growth and yield

Ainsworth, E., Davey, P. A., Bernacchi, C., Dermody, O. C., Heaton, E. A., Moore, D. J., Morgan, P. B., Naidu, S. L., Ra, H. S. Y., Zhu, X. G., Curtis, P. S. & Long, S. P., Aug 15 2002, In : Global change biology. 8, 8, p. 695-709 15 p.

Research output: Contribution to journalArticle

Physiology
meta-analysis
Glycine
physiology
soybean
intercropping
meta-analysis
Meta-Analysis
shade
Greenhouse Effect

A method for determining the severity of sudden death syndrome in soybeans

Cui, D., Zhang, Q., Li, M., Slaminko, T. & Hartman, G. L., 2014, In : Transactions of the ASABE. 57, 2, p. 671-678 8 p.

Research output: Contribution to journalArticle

Sudden Death
Soybeans
soybean
death
leaf area

A method for extraction and enumeration of teliospores of Tilletia indica, T. controversa, and T. barclayana in soil

Babadoost, M. & Mathre, D. E., Dec 1998, In : Plant disease. 82, 12, p. 1357-1361 5 p.

Research output: Contribution to journalArticle

Tilletia barclayana
Tilletia controversa
Tilletia indica
teliospores
soil

Amino acid differences in the N-terminal half of the polyprotein of Chinese turnip mosaic virus isolates affect symptom expression in Nicotiana benthamiana and radish

Hu, W. X., Seo, E. Y., Cho, I. S., Kim, J. K., Ju, H. K., Kim, I. H., Choi, G. W., Kim, B., Ahn, C. H., Domier, L. L., Oh, S. K., Hammond, J. & Lim, H. S., Jun 1 2019, In : Archives of Virology. 164, 6, p. 1683-1689 7 p.

Research output: Contribution to journalArticle

Raphanus
Mosaic Viruses
Polyproteins
Brassica napus
Tobacco

Amino acid metabolism in maize earshoots. Implications for assimilate preconditioning and nitrogen signaling.

Seebauer, J. R., Moose, S. P., Fabbri, B. J., Crossland, L. D. & Below, F. E., Dec 2004, In : Plant physiology. 136, 4, p. 4326-4334 9 p.

Research output: Contribution to journalArticle

amino acid metabolism
asparagine
Zea mays
Asparagine
Nitrogen

Ammonia flux measurements above a corn canopy using relaxed eddy accumulation and a flux gradient system

Nelson, A. J., Lichiheb, N., Koloutsou-Vakakis, S., Rood, M. J., Heuer, M., Myles, L. T., Joo, E., Miller, J. & Bernacchi, C., Jan 15 2019, In : Agricultural and Forest Meteorology. 264, p. 104-113 10 p.

Research output: Contribution to journalArticle

flux measurement
eddy
ammonia
maize
canopy
Organic carbon
organic soil
organic carbon
Soils
climate

A modified method for the production of 36ClL3- for use in plant nitrate transport studies

Ruiz-Cristin, J., Chodera, A. J. & Briskin, D. P., Oct 1989, In : Analytical Biochemistry. 182, 1, p. 146-150 5 p.

Research output: Contribution to journalArticle

Nitrates
Purification
Column chromatography
Electrolysis
Anions

Amplified fragment length polymorphism-based genetic relationships among weedy Amaranthus species

Wassom, J. J. & Tranel, P. J., Jul 1 2005, In : Journal of Heredity. 96, 4, p. 410-416 7 p.

Research output: Contribution to journalArticle

Amaranthus
genetic relationships
amplified fragment length polymorphism
Amaranthus palmeri
Amaranthus hybridus

Amplified fragment length polymorphism markers linked to a major quantitative trait locus controlling scab resistance in wheat

Bai, G., Kolb, F. L., Shaner, G. & Domier, L. L., Apr 1999, In : Phytopathology. 89, 4, p. 343-348 6 p.

Research output: Contribution to journalArticle

amplified fragment length polymorphism
quantitative trait loci
inflorescences
inbred lines
wheat

A multiplexed immunofluorescence method identifies Phakopsora pachyrhizi urediniospores and determines their viability

Vittal, R., Haudenshield, J. S. & Hartman, G. L., Dec 1 2012, In : Phytopathology. 102, 12, p. 1143-1152 10 p.

Research output: Contribution to journalArticle

Phakopsora pachyrhizi
fluorescent antibody technique
viability
fluorescein
spores

A Multi-Population Consensus Genetic Map Reveals Inconsistent Marker Order among Maps Likely Attributed to Structural Variations in the Apple Genome

Khan, M. A., Han, Y., Zhao, Y. F., Troggio, M. & Korban, S. S., Nov 5 2012, In : PloS one. 7, 11, e47864.

Research output: Contribution to journalArticle

Population Genetics
Malus
apples
Genes
Genome

A Multistate Study of the Association Between Glyphosate Resistance and EPSPS Gene Amplification in Waterhemp (Amaranthus tuberculatus)

Chatham, L. A., Bradley, K. W., Kruger, G. R., Martin, J. R., Owen, M. D. K., Peterson, D. E., Mithila, J. & Tranel, P. J., Jul 1 2015, In : Weed Science. 63, 3, p. 569-577 9 p.

Research output: Contribution to journalArticle

Amaranthus tuberculatus
gene amplification
glyphosate
phosphates
Amaranthus palmeri

AmyR Is a Novel Negative Regulator of Amylovoran Production in Erwinia amylovora

Wang, D., Korban, S. S., Pusey, P. L. & Zhao, Y., Sep 18 2012, In : PloS one. 7, 9, e45038.

Research output: Contribution to journalArticle

Erwinia amylovora
Genes
exopolysaccharides
mutants
knockout mutants

An adaptive management approach to improve water quality at a model dairy farm in Vermont, USA

Kominami, H. & Lovell, S. T., Mar 1 2012, In : Ecological Engineering. 40, p. 131-143 13 p.

Research output: Contribution to journalArticle

Dairies
adaptive management
Farms
Water quality
farm

An Affinity-Effect Relationship for Microbial Communities in Plant-Soil Feedback Loops

Lou, Y., Clay, S. A., Davis, A. S., Dille, A., Felix, J., Ramirez, A. H. M., Sprague, C. L. & Yannarell, A. C., May 2014, In : Microbial Ecology. 67, 4, p. 866-876 11 p.

Research output: Contribution to journalArticle

Helianthus annuus
microbial communities
microbial community
soil
Ambrosia trifida

An agent-based metapopulation model simulating virus-based biocontrol of Heterodera glycines

Anderson, S., Soman, C., Bekal, S., Domier, L., Lambert, K. & Bhalerao, K., Jan 1 2018, In : Journal of Nematology. 50, 2, p. 79-90 12 p.

Research output: Contribution to journalArticle

Heterodera glycines
biological control
virulence
viruses
Nematoda

Analyses of pig genomes provide insight into porcine demography and evolution

Groenen, M. A. M., Archibald, A. L., Uenishi, H., Tuggle, C. K., Takeuchi, Y., Rothschild, M. F., Rogel-Gaillard, C., Park, C., Milan, D., Megens, H. J., Li, S., Larkin, D. M., Kim, H., Frantz, L. A. F., Caccamo, M., Ahn, H., Aken, B. L., Anselmo, A., Anthon, C., Auvil, L. & 116 others, Badaoui, B., Beattie, C. W., Bendixen, C., Berman, D., Blecha, F., Blomberg, J., Bolund, L., Bosse, M., Botti, S., Bujie, Z., Bystrom, M., Capitanu, B., Carvalho-Silva, D., Chardon, P., Chen, C., Cheng, R., Choi, S. H., Chow, W., Clark, R. C., Clee, C., Crooijmans, R. P. M. A., Dawson, H. D., Dehais, P., De Sapio, F., Dibbits, B., Drou, N., Du, Z. Q., Eversole, K., Fadista, J., Fairley, S., Faraut, T., Faulkner, G. J., Fowler, K. E., Fredholm, M., Fritz, E., Gilbert, J. G. R., Giuffra, E., Gorodkin, J., Griffin, D. K., Harrow, J. L., Hayward, A., Howe, K., Hu, Z. L., Humphray, S. J., Hunt, T., Hornshoøj, H., Jeon, J. T., Jern, P., Jones, M., Jurka, J., Kanamori, H., Kapetanovic, R., Kim, J., Kim, J. H., Kim, K. W., Kim, T. H., Larson, G., Lee, K., Lee, K. T., Leggett, R., Lewin, H. A., Li, Y., Liu, W., Loveland, J. E., Lu, Y., Lunney, J. K., Ma, J., Madsen, O., Mann, K., Matthews, L., McLaren, S., Morozumi, T., Murtaugh, M. P., Narayan, J., Nguyen, D. T., Ni, P., Oh, S. J., Onteru, S., Panitz, F., Park, E. W., Park, H. S., Pascal, G., Paudel, Y., Perez-Enciso, M., Ramirez-Gonzalez, R., Reecy, J. M., Rodriguez-Zas, S., Rohrer, G. A., Rund, L., Sang, Y., Schachtschneider, K., Schraiber, J. G., Schwartz, J., Scobie, L., Scott, C., Searle, S., Servin, B., Southey, B. R., Sperber, G., Stadler, P., Sweedler, J. V., Tafer, H., Thomsen, B., Wali, R., Wang, J., Wang, J., White, S., Xu, X., Yerle, M., Zhang, G., Zhang, J., Zhang, J., Zhao, S., Rogers, J., Churcher, C. & Schook, L. B., Nov 15 2012, In : Nature. 491, 7424, p. 393-398 6 p.

Research output: Contribution to journalArticle

Sus scrofa
Swine
Demography
Genome
Smell

Analysis of active nucleolus organizing regions in polyploid prairie cordgrass (Spartina pectinata Link) by silver staining

Kim, S., Lee, D. K. & Rayburn, A. L., Jan 1 2015, In : Cytologia. 80, 2, p. 249-258 10 p.

Research output: Contribution to journalArticle

Spartina pectinata
Silver Staining
Polyploidy
Ploidies
cell nucleolus

Analysis of a horizontally transferred pathway involved in vitamin B 6 biosynthesis from the soybean cyst nematode Heterodera glycines

Craig, J. P., Bekal, S., Hudson, M., Domier, L., Niblack, T. & Lambert, K. N., Oct 1 2008, In : Molecular biology and evolution. 25, 10, p. 2085-2098 14 p.

Research output: Contribution to journalArticle

Horizontal Gene Transfer
Heterodera glycines
Vitamin B 6
pyridoxine
cyst

Analysis of Alternative Splicing Landscape in Pineapple (Ananas comosus)

Wai, C. M., Powell, B., Ming, R. & Min, X. J., Sep 1 2016, In : Tropical Plant Biology. 9, 3, p. 150-160 11 p.

Research output: Contribution to journalArticle

Ananas
Ananas comosus
alternative splicing
Alternative Splicing
pineapples

Analysis of a quantitative trait locus allele from wild soybean that increases seed protein concentration in soybean

Sebolt, A. M., Shoemaker, R. C. & Diers, B. W., Oct 26 2000, In : Crop Science. 40, 5, p. 1438-1444 7 p.

Research output: Contribution to journalArticle

Glycine soja
quantitative trait loci
soybeans
alleles
seeds

Analysis of economic and social costs of growing Petunia × Hybrida in a greenhouse production system using alternative containers

Brumfield, R. G., Kenny, L. B., Devincentis, A. J., Koeser, A. K., Verlinden, S., Both, A. J., Bi, G., Lovell, S. T. & Stewart, J. R., Aug 2018, In : HortScience. 53, 8, p. 1179-1185 7 p.

Research output: Contribution to journalArticle

Petunia hybrida
greenhouse production
economic analysis
containers
production technology