Research Output 1975 2020

Behavior-specific changes in transcriptional modules lead to distinct and predictable neurogenomic states

Chandrasekaran, S., Ament, S. A., Eddy, J. A., Rodriguez-Zas, S. L., Schatz, B. R., Price, N. D. & Robinson, G. E., Nov 1 2011, In : Proceedings of the National Academy of Sciences of the United States of America. 108, 44, p. 18020-18025 6 p.

Research output: Contribution to journalArticle

Transcription Factors
Gene Regulatory Networks
Brain
Bees
Genes

Being smart is not enough to ensure success: Integrating personal development into a general education course

Whitehall, A. P., Hill, L. G., Yost, D. M. & Kidwell, K. K., Jan 1 2016, In : Journal of General Education. 65, 3-4, p. 241-263 23 p.

Research output: Contribution to journalArticle

general education
university
conflict management
social integration
employer

Benefits of using molecular structure and abundance in phylogenomic analysis

Caetano-Anollés, G. & Nasir, A., Dec 1 2012, In : Frontiers in Genetics. 3, SEP, Article 172.

Research output: Contribution to journalArticle

Molecular Structure

BETYdb: a yield, trait, and ecosystem service database applied to second-generation bioenergy feedstock production

LeBauer, D. S., Kooper, R., Mulrooney, P., Rohde, S., Wang, D., Long, S. P. & Dietze, M. C., Jan 2018, In : GCB Bioenergy. 10, 1, p. 61-71 11 p.

Research output: Contribution to journalArticle

bioenergy
Biofuels
feedstocks
biofuels
biofuel

Beyond the nutrient strategies: Common ground to accelerate agricultural water quality improvement in the upper Midwest

Christianson, R., Christianson, L., Wong, C., Helmers, M., McIsaac, G., Mulla, D. & McDonald, M., Jan 15 2018, In : Journal of Environmental Management. 206, p. 1072-1080 9 p.

Research output: Contribution to journalArticle

Nutrients
Water quality
nutrient
Nitrogen
production system

Bile acid sodium symporter BASS6 can transport glycolate and is involved in photorespiratory metabolism in Arabidopsis thaliana

South, P. F., Walker, B. J., Cavanagh, A. P., Rolland, V., Badger, M. & Ort, D. R., Apr 2017, In : Plant Cell. 29, 4, p. 808-823 16 p.

Research output: Contribution to journalArticle

glycolic acid
symporters
Symporters
photorespiration
bile acids
Acclimatization
Soybeans
Glycine max
acclimation
carbon dioxide

Biochemical and mutagenic characterization of plant‐activated aromatic amines

Plewa, M. J., Gichner, T., Xin, H., Seo, KY. Y., Smith, S. R. & Wagner, E. D., Aug 1993, In : Environmental Toxicology and Chemistry. 12, 8, p. 1353-1363 11 p.

Research output: Contribution to journalArticle

Amines
Chemical activation
Plant Cells
Cultured Cells
Agrochemicals

Biochemical and structural consequences of a glycine deletion in the α-8 helix of protoporphyrinogen oxidase

Dayan, F. E., Daga, P. R., Duke, S. O., Lee, R. M., Tranel, P. J. & Doerksen, R. J., Jul 1 2010, In : Biochimica et Biophysica Acta - Proteins and Proteomics. 1804, 7, p. 1548-1556 9 p.

Research output: Contribution to journalArticle

Protoporphyrinogen Oxidase
Glycine
Herbicides
Herbicide Resistance
Catalytic Domain

Biochemical and transcriptomic analysis of maize diversity to elucidate drivers of leaf carbon isotope composition

Kolbe, A. R., Studer, A. J. & Cousins, A. B., Jan 1 2018, In : Functional Plant Biology. 45, 5, p. 489-500 12 p.

Research output: Contribution to journalArticle

transcriptomics
isotopes
phosphoenolpyruvate carboxylase
carbonate dehydratase
ribulose 1,5-diphosphate

Biochemical basis of the activation of promutagens by plant cell systems

Plewa, M. J., 1991, ASTM Special Technical Publication. Gorsuch, J. W., Lower, W. R., Lewis, M. A., Sandhu, S. & Wang, W. (eds.). 1115 ed. Publ by ASTM, p. 287-296 10 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Chemical activation
Assays
Agricultural chemicals
Mutagens
Tobacco

Biochemical characterization of metabolism-based atrazine resistance in Amaranthus tuberculatus and identification of an expressed GST associated with resistance

Evans, A. F., O'Brien, S. R., Ma, R., Hager, A. G., Riggins, C. W., Lambert, K. N. & Riechers, D. E., Oct 2017, In : Plant Biotechnology Journal. 15, 10, p. 1238-1249 12 p.

Research output: Contribution to journalArticle

Amaranthus tuberculatus
Amaranthus
Atrazine
atrazine
Glutathione Transferase

Biochemical proxies indicate differences in soil C cycling induced by long-term tillage and residue management in a tropical agroecosystem

Margenot, A. J., Pulleman, M. M., Sommer, R., Paul, B. K., Parikh, S. J., Jackson, L. E. & Fonte, S. J., Nov 1 2017, In : Plant and Soil. 420, 1-2, p. 315-329 15 p.

Research output: Contribution to journalArticle

agricultural ecosystem
agroecosystems
soil organic carbon
tillage
organic carbon

Biochemical regulation during the mid-day decline of photosynthesis in field-grown sunflower

Wise, R. R., Sparrow, D. H., Ortiz-Lopez, A. & Ort, D. R., 1991, In : Plant Science. 74, 1, p. 45-52 8 p.

Research output: Contribution to journalArticle

Helianthus
Photosynthesis
Helianthus annuus
photosynthesis
leaves

Biocontainer use in a Petunia ×hybrida greenhouse production system: A cradle-to-gate carbon footprint assessment of secondary impacts

Koeser, A. K., Lovell, S. T., Petri, A. C., Brumfield, R. G. & Stewart, J. R., Mar 2014, In : HortScience. 49, 3, p. 265-271 7 p.

Research output: Contribution to journalArticle

carbon footprint
Petunia hybrida
greenhouse production
global warming
containers

Biocontainer water use in short-term greenhouse crop production

Koeser, A., Lovell, S. T., Evans, M. & Stewart, J. R., Apr 1 2013, In : HortTechnology. 23, 2, p. 215-219 5 p.

Research output: Contribution to journalArticle

crop production
containers
greenhouses
plastics
water

Biodegradable plastic and fabric mulch performance in field and high tunnel cucumber production

Wortman, S. E., Kadoma, I. & Crandall, M. D., Apr 2016, In : HortTechnology. 26, 2, p. 148-155 8 p.

Research output: Contribution to journalArticle

biodegradability
cucumbers
plastics
soil
films (materials)

Bioeconomic evaluation of sow longevity and profitability

Rodriguez-Zas, S. L., Southey, B. R., Knox, R. V., Connor, J. F., Lowe, J. F. & Roskamp, B. J., Dec 2003, In : Journal of Animal Science. 81, 12, p. 2915-2922 8 p.

Research output: Contribution to journalArticle

bioeconomics
profitability
sows
genetic lines
herds

Bioenergy yields of several cropping systems in the U.S. corn belt

Nafziger, E. D., Villamil, M. B., Niekamp, J., Iutzi, F. W. & Davis, V. M., Mar 1 2016, In : Agronomy Journal. 108, 2, p. 559-565 7 p.

Research output: Contribution to journalArticle

Corn Belt region
bioenergy
cropping systems
Thlaspi arvense
corn

Biofilm formation in Erwinia amylovora: Implications in pathogenicity

Koczan, J., McGrath, M., Sundin, G. W. & Zhao, Y., Dec 1 2008, In : Acta Horticulturae. 793, p. 67-72 6 p.

Research output: Contribution to journalConference article

Erwinia amylovora
biofilm
pathogenicity
mutants
exopolysaccharides

Biofuels on the landscape: Is "land sharing" preferable to "land sparing"?

Anderson-Teixeira, K. J., Duval, B. D., Long, S. P. & Delucia, E. H., Dec 1 2012, In : Ecological Applications. 22, 8, p. 2035-2048 14 p.

Research output: Contribution to journalArticle

biofuel
bioenergy
ecosystem service
crop
greenhouse gas

Biogeochemical consequences of regional land use change to a biofuel crop in the southeastern United States

Duval, B. D., Hartman, M., Marx, E., Parton, W. J., Long, S. P. & DeLucia, E. H., Dec 1 2015, In : Ecosphere. 6, 12, 265.

Research output: Contribution to journalArticle

energy crops
canes
Southeastern United States
biofuel
land use change

Bioinformatics analysis of transcriptome dynamics during growth in Angus cattle longissimus muscle

Moisá, S. J., Shike, D. W., Graugnard, D. E., Rodriguez-Zas, S. L., Everts, R. E., Lewin, H. A., Faulkner, D. B., Berger, L. L. & Loor, J. J., Jan 1 2013, In : Bioinformatics and Biology Insights. 7, p. 253-270 18 p.

Research output: Contribution to journalArticle

Gene Expression Profiling
Bioinformatics
Computational Biology
Muscle
Genes

Bioinformatics and gene network analyses of the swine mammary gland transcriptome during late gestation

Zhao, W., Shahzad, K., Jiang, M., Graugnard, D. E., Rodriguez-Zas, S. L., Luo, J., Loor, J. J. & Hurley, W. L., Jul 19 2013, In : Bioinformatics and Biology Insights. 7, p. 193-216 24 p.

Research output: Contribution to journalArticle

Interleukin-4 Receptors
Gene Networks
Gene Regulatory Networks
Human Mammary Glands
Bioinformatics

Bioinformatics for prohormone and neuropeptide discovery

Southey, B. R., Romanova, E. V., Rodriguez-Zas, S. L. & Sweedler, J. V., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 71-96 26 p. (Methods in Molecular Biology; vol. 1719).

Research output: Chapter in Book/Report/Conference proceedingChapter

Computational Biology
Neuropeptides
Peptide Hormones
Post Translational Protein Processing
Proteomics

Biokinetic Analysis and Metabolic Fate of 2,4-D in 2,4-D-Resistant Soybean (Glycine max)

Skelton, J. J., Simpson, D. M., Peterson, M. A. & Riechers, D. E., Jul 26 2017, In : Journal of Agricultural and Food Chemistry. 65, 29, p. 5847-5859 13 p.

Research output: Contribution to journalArticle

2,4-Dichlorophenoxyacetic Acid
Soybeans
Glycine
2,4-D
Glycine max

Biolistic transformation, expression, and inheritance of bovine β-casein in soybean (Glycine max)

Maughan, P. J., Philip, R., Cho, M. J., Widholm, J. M. & Vodkin, L. O., Jan 1 1999, In : In Vitro Cellular and Developmental Biology - Plant. 35, 4, p. 344-349 6 p.

Research output: Contribution to journalArticle

Biolistics
biolistics
Caseins
Soybeans
Glycine max

Biological interpretations of transcriptomic profiles in mammalian oocytes and embryos

Rodriguez-Zas, S. L., Schellander, K. & Lewin, H. A., Feb 1 2008, In : Reproduction. 135, 2, p. 129-139 11 p.

Research output: Contribution to journalArticle

Mammalian Embryo
Transcriptome
Oocytes
Embryonic Structures
Biological Phenomena

Biological mechanism for the toxicity of haloacetic acid drinking water disinfection byproducts

Pals, J. A., Ang, J. K., Wagner, E. D. & Plewa, M. J., Jul 1 2011, In : Environmental Science and Technology. 45, 13, p. 5791-5797 7 p.

Research output: Contribution to journalArticle

acid water
Disinfection
Drinking Water
acetic acid
disinfection

Biological P cycling is influenced by the form of P fertilizer in an Oxisol

Margenot, A. J., Sommer, R., Mukalama, J. & Parikh, S. J., Nov 1 2017, In : Biology and Fertility of Soils. 53, 8, p. 899-909 11 p.

Research output: Contribution to journalArticle

phosphate rock
Oxisol
rock phosphate
Fertilizers
Oxisols

Biological significance of low weed population densities on sweet corn

Williams, M. M., Mar 1 2010, In : Agronomy Journal. 102, 2, p. 464-468 5 p.

Research output: Contribution to journalArticle

sweetcorn
ears
population density
weeds
crops

Biomass allocation in old-field annual species grown in elevated CO2 environments: No evidence for optimal partitioning

Bernacchi, C. J., Coleman, J. S., Bazzaz, F. A. & McConnaughay, K. D. M., Nov 13 2000, In : Global change biology. 6, 7, p. 855-863 9 p.

Research output: Contribution to journalArticle

old field
biomass allocation
Biomass
partitioning
Nutrients

Biomass feedstock preprocessing and long-distance transportation logistics

Lin, T., Rodríguez, L. F., Davis, S., Khanna, M., Shastri, Y., Grift, T., Long, S. & Ting, K. C., Jan 1 2016, In : GCB Bioenergy. 8, 1, p. 160-170 11 p.

Research output: Contribution to journalArticle

feedstocks
Feedstocks
Logistics
logistics
Biomass

Biomass production of herbaceous energy crops in the United States: field trial results and yield potential maps from the multiyear regional feedstock partnership

Lee, D. K., Aberle, E., Anderson, E. K., Anderson, W., Baldwin, B. S., Baltensperger, D., Barrett, M., Blumenthal, J., Bonos, S., Bouton, J., Bransby, D. I., Brummer, C., Burks, P. S., Chen, C., Daly, C., Egenolf, J., Farris, R. L., Fike, J. H., Gaussoin, R., Gill, J. R. & 38 others, Gravois, K., Halbleib, M. D., Hale, A., Hanna, W., Harmoney, K., Heaton, E. A., Heiniger, R. W., Hoffman, L., Hong, C. O., Kakani, G., Kallenbach, R., Macoon, B., Medley, J. C., Missaoui, A., Mitchell, R., Moore, K. J., Morrison, J. I., Odvody, G. N., Richwine, J. D., Ogoshi, R., Parrish, J. R., Quinn, L., Richard, E., Rooney, W. L., Rushing, J. B., Schnell, R., Sousek, M., Staggenborg, S. A., Tew, T., Uehara, G., Viands, D. R., Voigt, T., Williams, D., Williams, L., Wilson, L. T., Wycislo, A., Yang, Y. & Owens, V., Oct 2018, In : GCB Bioenergy. 10, 10, p. 698-716 19 p.

Research output: Contribution to journalArticle

energy crop
energy crops
feedstocks
Feedstocks
Crops

Biomass Reducing Potential and Prospective Fungicide Control of a New Leaf Blight of Miscanthus × giganteus Caused by Leptosphaerulina chartarum

Ahonsi, M. O., Ames, K. A., Gray, M. E. & Bradley, C. A., Jun 1 2013, In : Bioenergy Research. 6, 2, p. 737-745 9 p.

Research output: Contribution to journalArticle

Leptosphaerulina
Miscanthus giganteus
Fungicides
leaf blight
cyproconazole

Biomass yield and feedstock quality of prairie cordgrass in response to seeding rate, row spacing, and nitrogen fertilization

Guo, J., Thapa, S., Voigt, T., Owens, V., Boe, A. & Lee, D. K., Nov 1 2017, In : Agronomy Journal. 109, 6, p. 2474-2485 12 p.

Research output: Contribution to journalArticle

Spartina pectinata
row spacing
feedstocks
sowing
biomass

Biomass yield in a genetically diverse Miscanthus sinensis germplasm panel evaluated at five locations revealed individuals with exceptional potential

Clark, L. V., Dwiyanti, M. S., Anzoua, K. G., Brummer, J. E., Ghimire, B. K., Głowacka, K., Hall, M., Heo, K., Jin, X., Lipka, A. E., Peng, J., Yamada, T., Yoo, J. H., Yu, C. Y., Zhao, H., Long, S. P. & Sacks, E. J., Oct 1 2019, In : GCB Bioenergy. 11, 10, p. 1125-1145 21 p.

Research output: Contribution to journalArticle

Open Access
Miscanthus giganteus
Miscanthus sinensis
germplasm
Biomass
biomass

Biophysical and social barriers restrict water quality improvements in the Mississippi River Basin

David, M. B., Flint, C. G., McIsaac, G. F., Gentry, L. E., Dolan, M. K. & Czapar, G. F., Nov 5 2013, In : Environmental Science and Technology. 47, 21, p. 11928-11929 2 p.

Research output: Contribution to journalComment/debate

Biophysical Phenomena
Chemical Water Pollutants
Midwestern United States
Mississippi
Environmental Monitoring

Biophysical impacts of climate-smart agriculture in the Midwest United States

Bagley, J. E., Miller, J. & Bernacchi, C. J., Sep 1 2015, In : Plant, Cell and Environment. 38, 9, p. 1913-1930 18 p.

Research output: Contribution to journalReview article

Midwestern United States
Agriculture
Climate
agriculture
climate

Biorefinery for combined production of jet fuel and ethanol from lipid-producing sugarcane: a techno-economic evaluation

Kumar, D., Long, S. P. & Singh, V., Feb 1 2018, In : GCB Bioenergy. 10, 2, p. 92-107 16 p.

Research output: Contribution to journalArticle

biorefining
Jet fuel
economic analysis
Lipids
sugarcane

Biotechnological Methods for Selection of High-Yielding Cell Lines and Production of Secondary Metabolites in Medicinal Plants

Briskin, D. P., Mar 20 2008, Medicinal Plant Biotechnology: From Basic Research to Industrial Applications. Wiley-VCH Verlag GmbH, p. 187-201 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Medicinal Plants
Cell Line

Biotechnology and the European corn borer: measuring historical farmer perceptions and adoption of transgenic Bt corn as a pest management strategy.

Pilcher, C. D., Rice, M. E., Higgins, R. A., Steffey, K. L., Hellmich, R. L., Witkowski, J., Calvin, D., Ostlie, K. R. & Gray, M., Oct 2002, In : Journal of economic entomology. 95, 5, p. 878-892 15 p.

Research output: Contribution to journalArticle

Ostrinia nubilalis
pest control
biotechnology
pest management
Bacillus thuringiensis

Biotechnology approaches to improving maize nitrogen use efficiency

Moose, S. P. & Below, F. E., Jan 1 2009, Biotechnology in Agriculture and Forestry. Springer International Publishing, p. 65-77 13 p. (Biotechnology in Agriculture and Forestry; vol. 63).

Research output: Chapter in Book/Report/Conference proceedingChapter

nutrient use efficiency
biotechnology
Biotechnology
Fertilizers
Zea mays

Biotic stress globally downregulates photosynthesis genes

Bilgin, D. D., Zavala, J. A., Zhu, J., Clough, S. J., Ort, D. R. & Delucia, E. H., Oct 1 2010, In : Plant, Cell and Environment. 33, 10, p. 1597-1613 17 p.

Research output: Contribution to journalArticle

Photosynthesis
biotic stress
Down-Regulation
photosynthesis
Genes

Biphasic patterns of diversification and the emergence of modules

Mittenthal, J., Caetano-Anollés, D. & Caetano-Anollés, G., Dec 1 2012, In : Frontiers in Genetics. 3, AUG, Article 147.

Research output: Contribution to journalArticle

Cellular Structures
Molecular Structure
Embryonic Structures
RNA
Proteins

Bivariate genome-wide association analysis of the growth and intake components of feed efficiency

Serão, N. V. L., González-Peña, D., Beever, J. E., Bollero, G. A., Southey, B. R., Faulkner, D. B. & Rodriguez-Zas, S. L., Jan 1 2013, In : PloS one. 8, 10, p. e78530

Research output: Contribution to journalArticle

Genome-Wide Association Study
Polymorphism
single nucleotide polymorphism
Single Nucleotide Polymorphism
feed conversion

Black cutworm damage and recovery of corn plants: influence of pyrethroid and organophosphate soil insecticide treatments

Oloumi-Sadeghi, H., Levine, E., Steffey, K. L. & Gray, M., Aug 1992, In : Crop Protection. 11, 4, p. 323-328 6 p.

Research output: Contribution to journalArticle

Agrotis ipsilon
organophosphorus compounds
pyrethrins
insecticides
Zea mays

Black Locust as a Bioenergy Feedstock: a Review

Straker, K. C., Quinn, L. D., Voigt, T. B., Lee, D. & Kling, G. J., Sep 8 2015, In : Bioenergy Research. 8, 3, p. 1117-1135 19 p.

Research output: Contribution to journalReview article

Robinia pseudoacacia
bioenergy
feedstocks
Feedstocks
Biomass

Blocking the plant activation of promutagenic aromatic amines by peroxidase inhibitors.

Plewa, M. J., 1993, In : Basic life sciences. 61, p. 201-217 17 p.

Research output: Contribution to journalArticle

Benzoflavones
Antimutagenic Agents
Potassium Cyanide
Mutagenicity Tests
Ditiocarb

Boiling of simulated tap water: Effect on polar brominated disinfection byproducts, halogen speciation, and cytotoxicity

Pan, Y., Zhang, X., Wagner, E. D., Osiol, J. & Plewa, M. J., Jan 7 2014, In : Environmental Science and Technology. 48, 1, p. 149-156 8 p.

Research output: Contribution to journalArticle

Halogens
Disinfection
halogen
Cytotoxicity
disinfection