Research Output 1975 2020

The Plant Ontology Database: A community resource for plant structure and developmental stages controlled vocabulary and annotations

Avraham, S., Tung, C. W., Ilic, K., Jaiswal, P., Kellogg, E. A., Mccouch, S., Pujar, A., Reiser, L., Rhee, S. Y., Sachs, M. M., Schaeffer, M., Stein, L., Stevens, P., Vincent, L., Zapata, F. & Ware, D., Jan 1 2008, In : Nucleic acids research. 36, SUPPL. 1, p. D449-D454

Research output: Contribution to journalArticle

Controlled Vocabulary
Plant Structures
Databases
Web Browser
Genes

The plant structure ontology, a unified vocabulary of anatomy and morphology of a flowering plant

Ilic, K., Kellogg, E. A., Jaiswal, P., Zapata, F., Stevens, P. F., Vincent, L. P., Avraham, S., Reiser, L., Pujar, A., Sachs, M. M., Whitman, N. T., McCouch, S. R., Schaeffer, M. L., Ware, D. H., Stein, L. D. & Rhee, S. Y., Feb 1 2007, In : Plant physiology. 143, 2, p. 587-599 13 p.

Research output: Contribution to journalArticle

Plant Structures
Vocabulary
Angiospermae
Anatomy
Databases

The plasma membrane as a barrier to herbicide penetration and site for adjuvant action

Wade, B. R., Riechers, D. E., Liebla, R. A. & Wax, L. M., 1993, In : Pesticide Science. 37, 2, p. 195-202 8 p.

Research output: Contribution to journalArticle

Herbicides
adjuvants
plasma membrane
herbicides
Cell Membrane

The plasma membrane H+-ATPase of higher plant cells: biochemistry and transport function

Briskin, D. P., Aug 30 1990, In : BBA - Bioenergetics. 1019, 2, p. 95-109 15 p.

Research output: Contribution to journalReview article

Proton Pumps
Biochemistry
Proton-Translocating ATPases
Cell membranes
Adenosine Triphosphatases

The plastid casein kinase 2 phosphorylates rubisco activase at the Thr-78 site but is not essential for regulation of rubisco activation state

Kim, S. Y., Bender, K. W., Walker, B. J., Zielinski, R. E., Spalding, M. H., Ort, D. R. & Huber, S. C., Mar 31 2016, In : Frontiers in Plant Science. 7, MAR2016, 404.

Research output: Contribution to journalArticle

ribulose-bisphosphate carboxylase
threonine
plastids
phosphorylation
knockout mutants

The PmrAB system in Erwinia amylovora renders the pathogen more susceptible to polymyxin B and more resistant to excess iron

Nakka, S., Qi, M. & Zhao, Y., Mar 1 2010, In : Research in Microbiology. 161, 2, p. 153-157 5 p.

Research output: Contribution to journalArticle

Erwinia amylovora
Polymyxin B
Iron

The pomegranate (Punica granatum L.) genome and the genomics of punicalagin biosynthesis

Qin, G., Xu, C., Ming, R. R., Tang, H., Guyot, R., Kramer, E. M., Hu, Y., Yi, X., Qi, Y., Xu, X., Gao, Z., Pan, H., Jian, J., Tian, Y., Yue, Z. & Xu, Y., Sep 2017, In : Plant Journal. 91, 6, p. 1108-1128 21 p.

Research output: Contribution to journalArticle

Punicaceae
Punica granatum
Genomics
biosynthesis
Genome

The Possible Relation between a Membrane Conformational Change and Photosystem II Dependent Hydrogen Ion Accumulation and Adenosine 5′-Triphosphate Synthesis

Giaquinta, R. T., Ort, D. R. & Dilley, R. A., Oct 1 1975, In : Biochemistry. 14, 20, p. 4392-4396 5 p.

Research output: Contribution to journalArticle

Photosystem II Protein Complex
Plastoquinone
Adenosine
Protons
Adenosine Triphosphate

The potential of two perennial C4 grasses and a perennial C4 sedge as ligno-Cellulosic fuel crops in N.W. Europe. Crop establishment and yields in E. England

Potter, L., Bingham, M. J., Baker, M. G. & Long, S. P., Nov 1995, In : Annals of botany. 76, 5, p. 513-520 8 p.

Research output: Contribution to journalArticle

plant establishment
energy crops
England
crop yield
Spartina pectinata

The power and potential of genomics in weed biology and management

Ravet, K., Patterson, E. L., Krähmer, H., Hamouzová, K., Fan, L., Jasieniuk, M., Lawton-Rauh, A., Malone, J. M., McElroy, J. S., Merotto, A., Westra, P., Preston, C., Vila-Aiub, M. M., Busi, R., Tranel, P. J., Reinhardt, C., Saski, C., Beffa, R., Neve, P. & Gaines, T. A., Oct 2018, In : Pest Management Science. 74, 10, p. 2216-2225 10 p.

Research output: Contribution to journalArticle

weed biology
weed control
weeds
genomics
genome

The productivity of the C4 grass Echinochloa polystachya on the Amazon floodplain

Piedade, M. T. F., Junk, W. J. & Long, S. P., Jan 1 1991, In : Ecology. 72, 4, p. 1456-1463 8 p.

Research output: Contribution to journalArticle

Echinochloa polystachya
C4 plants
floodplains
dry matter
floodplain

The proteomic complexity and rise of the primordial ancestor of diversified life

Kim, K. M. & Caetano-Anolles, G., May 27 2011, In : BMC Evolutionary Biology. 11, 1, 140.

Research output: Contribution to journalArticle

proteomics
ancestry
proteome
organisms
fold

The quantum yield of flash-induced proton release by bacteriorhodopsin-containing membrane fragments

Ort, D. R. & Parson, W. W., Jan 1 1979, In : Biophysical journal. 25, 2, p. 341-353 13 p.

Research output: Contribution to journalArticle

Bacteriorhodopsins
Osmolar Concentration
Protons
Membranes
Purple Membrane

Therapy-, gender- and race-specific microRNA markers, target genes and networks related to glioblastoma recurrence and survival

Delfino, K. R., Serão, N. V. L., Southey, B. R. & Rodriguez-Zas, S. L., Jan 1 2011, In : Cancer Genomics and Proteomics. 8, 4, p. 173-183 11 p.

Research output: Contribution to journalArticle

Gene Regulatory Networks
Glioblastoma
MicroRNAs
Genes
Recurrence

The Rcs phosphorelay system is essential for pathogenicity in Erwinia amylovora

Wang, D., Korban, S. S. & Zhao, Y., Mar 1 2009, In : Molecular Plant Pathology. 10, 2, p. 277-290 14 p.

Research output: Contribution to journalArticle

Erwinia amylovora
pathogenicity
Virulence
Pyrus
mutants

The recovery of photosynthesis in tomato subsequent to chilling exposure

Martin, B. & Ort, D. R., Jan 1 1985, In : Photosynthesis research. 6, 2, p. 121-132 12 p.

Research output: Contribution to journalArticle

Chilling
Photosynthesis
Lycopersicon esculentum
photosynthesis
tomatoes

The relationship between chloroplast number and genome size in Zea mays ssp. mays

Ho, I. & Rayburn, A. L., 1991, In : Plant Science. 74, 2, p. 255-260 6 p.

Research output: Contribution to journalArticle

Chloroplast Genome
Genome Size
Zea
Chloroplasts
Zea mays
Thylakoids
Protons
Phosphorylation
Membranes
Adenosine Triphosphate

The relationship between nickel chloride-induced peroxidation and DNA strand breakage in rat liver

Stinson, T. J., Jaw, S., Jeffery, E. H. & Plewa, M. J., Nov 1992, In : Toxicology and Applied Pharmacology. 117, 1, p. 98-103 6 p.

Research output: Contribution to journalArticle

Liver
Lipid Peroxidation
Rats
Lipids
DNA

The relationship between seed-filling period and seed yield in selected soybean germplasm accessions

Nelson, R. L., Feb 1987, In : Field Crops Research. 15, 3-4, p. 245-250 6 p.

Research output: Contribution to journalArticle

germplasm
filling period
seed yield
soybean
soybeans

The response of photosynthesis and stomatal conductance to rising [CO 2]: Mechanisms and environmental interactions

Ainsworth, E. A. & Rogers, A., Mar 1 2007, In : Plant, Cell and Environment. 30, 3, p. 258-270 13 p.

Research output: Contribution to journalReview article

Photosynthesis
Carbon Monoxide
stomatal conductance
carbon dioxide
photosynthesis

Thermotherapy for control of fungal pathogens in propagative rootstocks of horseradish

Eranthodi, A., Babadoost, M. & Trierweiler, B., Apr 1 2010, In : HortScience. 45, 4, p. 599-604 6 p.

Research output: Contribution to journalArticle

horseradish
rootstocks
vigor
germination
pathogens

The RNA-binding protein CsrA controls virulence in Erwinia amylovora by regulating relA, RcsB, and FlhD at the posttranscriptional level

Lee, J. H., Ancona, V., Chatnaparat, T., Yang, H. W. & Zhao, Y., Oct 2019, In : Molecular Plant-Microbe Interactions. 32, 10, p. 1448-1459 12 p.

Research output: Contribution to journalArticle

Erwinia amylovora
type III secretion system
RNA-binding proteins
RNA-Binding Proteins
Virulence

The RNA-binding protein CsrA plays a central role in positively regulating virulence factors in Erwinia amylovora

Ancona, V., Lee, J. H. & Zhao, Y., Nov 15 2016, In : Scientific reports. 6, 37195.

Research output: Contribution to journalArticle

Erwinia amylovora
RNA-Binding Proteins
Virulence Factors
Virulence
Gammaproteobacteria

The role of cis-elements in the evolution of crassulacean acid metabolism photosynthesis

Chen, L. Y., Xin, Y., Wai, C. M., Liu, J. & Ming, R., Dec 1 2020, In : Horticulture Research. 7, 1, 5.

Research output: Contribution to journalReview article

Open Access
Crassulacean acid metabolism
Photosynthesis
Metabolism
photosynthesis
Acids
Open Access
vegetable consumption
glucosinolates
Brassica
antioxidant activity
hydrolysis

The role of herbicides in the erosion of salt marshes in eastern England

Mason, C. F., Underwood, G. J. C., Baker, N. R., Davey, P. A., Davidson, I., Hanlon, A., Long, S. P., Oxborough, K., Paterson, D. M. & Watson, A., Mar 1 2003, In : Environmental Pollution. 122, 1, p. 41-49 9 p.

Research output: Contribution to journalArticle

Wetlands
Herbicides
Diatoms
saltmarsh
England

The role of invertases in plant compensatory responses to simulated herbivory

Siddappaji, M. H., Scholes, D. R., Krishnankutty, S. M., Calla, B., Clough, S. J., Zielinski, R. E. & Paige, K. N., Jan 1 2015, In : BMC Plant Biology. 15, 1, 278.

Research output: Contribution to journalArticle

beta-fructofuranosidase
herbivores
pentoses
knockout mutants
glucose-6-phosphate 1-dehydrogenase

The Role of Management on Methane Emissions From Subtropical Wetlands Embedded in Agricultural Ecosystems

DeLucia, N. J., Gomez-Casanovas, N., Boughton, E. H. & Bernacchi, C., Sep 1 2019, In : Journal of Geophysical Research: Biogeosciences. 124, 9, p. 2694-2708 15 p.

Research output: Contribution to journalArticle

wetlands
Methane
ecosystems
Wetlands
agricultural ecosystem

The role of pheophorbide a oxygenase expression and activity in the canola green seed problem

Chung, D. W., Pružinská, A., Hörtensteiner, S. & Ort, D. R., Sep 1 2006, In : Plant physiology. 142, 1, p. 88-97 10 p.

Research output: Contribution to journalArticle

Oxygenases
oxygenases
canola
Seeds
seed development

The role of plant glutathione S-transferases in herbicide metabolism

Riechers, D. E., Vaughn, K. C. & Molin, W. T., Jan 1 2005, In : ACS Symposium Series. 899, p. 216-232 17 p.

Research output: Contribution to journalArticle

Herbicides
Glutathione Transferase
Metabolism
Detoxification
Xenobiotics

The role of root architecture in foraging behavior of entomopathogenic nematodes

Demarta, L., Hibbard, B. E., Bohn, M. O. & Hiltpold, I., Oct 1 2014, In : Journal of Invertebrate Pathology. 122, p. 32-39 8 p.

Research output: Contribution to journalArticle

root architecture
entomopathogenic nematodes
foraging behavior
nematode
foraging

The role of ROS signaling in cross-tolerance: From model to crop

Perez, L. B. & Brown, P. J., Dec 23 2014, In : Frontiers in Plant Science. 5, DEC, p. 1-6 6 p., 754.

Research output: Contribution to journalReview article

reactive oxygen species
crops
biotic stress
genetic correlation
abiotic stress
field capacity
Nicotiana tabacum
carbon dioxide
nitrogen
photosynthesis

The root‐knot nematode resistance gene (Mi) in tomato: construction of a molecular linkage map and identification of dominant cDNA markers in resistant genotypes

Ho, JY. Y., Weide, R., Ma, H. M., van Wordragen, M. F., Lambert, K. N., Koornneef, M., Zabel, P. & Williamson, V. M., Nov 1992, In : The Plant Journal. 2, 6, p. 971-982 12 p.

Research output: Contribution to journalArticle

Lycopersicon esculentum
chromosome mapping
Complementary DNA
Genotype
Nematoda

The scientific Grand Challenges of the 21st century for the Crop Science Society of America

Lauer, J. G., Bijl, C. G., Grusak, M. A., Stephen Baenziger, P., Boote, K., Lingle, S., Carter, T., Kaeppler, S., Boerma, R., Eizenga, G., Carter, P., Goodman, M., Nafziger, E. D., Kidwell, K., Mitchell, R., Edgerton, M. D., Quesenberry, K. & Willcox, M. C., May 1 2012, In : Crop Science. 52, 3, p. 1003-1010 8 p.

Research output: Contribution to journalArticle

crops
climate change
crop management
biotic stress
biofuels

The sex-specific region of sex chromosomes in animals and plants

Gschwend, A. R., Weingartner, L. A., Moore, R. C. & Ming, R. R., Jan 1 2012, In : Chromosome Research. 20, 1, p. 57-69 13 p.

Research output: Contribution to journalArticle

Sex Chromosomes
Testis
Chromosomes, Human, Y
Chromosomes, Human, X
Genes

The sharing of research materials: Do you?

Ort, D. R., Jun 1 2008, In : Plant physiology. 147, 2, p. 441-442 2 p.

Research output: Contribution to journalEditorial

Cooperative Behavior
Software
Research
Photosystem II Protein Complex
photosystem II
Carbon
Hot Temperature
Carbon Monoxide

The Songbird Neurogenomics (SoNG) Initiative: Community-based tools and strategies for study of brain gene function and evolution

Replogle, K., Arnold, A. P., Ball, G. F., Band, M., Bensch, S., Brenowitz, E. A., Dong, S., Drnevich, J., Ferris, M., George, J. M., Gong, G., Hasselquist, D., Hernandez, A. G., Kim, R., Lewin, H. A., Liu, L., Lovell, P. V., Mello, C. V., Naurin, S., Rodriguez-Zas, S. & 3 others, Thimmapuram, J., Wade, J. & Clayton, D. F., Mar 18 2008, In : BMC genomics. 9, 134.

Research output: Contribution to journalArticle

Songbirds
Finches
Brain
Equidae
Genes

The Sorghum bicolor genome and the diversification of grasses

Paterson, A. H., Bowers, J. E., Bruggmann, R., Dubchak, I., Grimwood, J., Gundlach, H., Haberer, G., Hellsten, U., Mitros, T., Poliakov, A., Schmutz, J., Spannagl, M., Tang, H., Wang, X., Wicker, T., Bharti, A. K., Chapman, J., Feltus, F. A., Gowik, U., Grigoriev, I. V. & 25 others, Lyons, E., Maher, C. A., Martis, M., Narechania, A., Otillar, R. P., Penning, B. W., Salamov, A. A., Wang, Y., Zhang, L., Carpita, N. C., Freeling, M., Gingle, A. R., Hash, C. T., Keller, B., Klein, P., Kresovich, S., McCann, M. C., Ming, R., Peterson, D. G., Mehboob-Ur-Rahman, Ware, D., Westhoff, P., Mayer, K. F. X., Messing, J. & Rokhsar, D. S., Jan 29 2009, In : Nature. 457, 7229, p. 551-556 6 p.

Research output: Contribution to journalArticle

Sorghum
Poaceae
Genome
Genes
Genome Size

The stringent response mediated by (p)ppGpp is required for virulence of Pseudomonas syringae pv. tomato and its survival on tomato

Chatnaparat, T., Li, Z., Korban, S. S. & Zhao, Y., Jul 1 2015, In : Molecular Plant-Microbe Interactions. 28, 7, p. 776-789 14 p.

Research output: Contribution to journalArticle

Pseudomonas syringae
type III secretion system
Pseudomonas syringae pv. tomato
Lycopersicon esculentum
Virulence

The sugar, biomass and biofuel potential of temperate by tropical maize hybrids

White, W. G., Vincent, M. L., Moose, S. P. & Below, F. E., Sep 2012, In : GCB Bioenergy. 4, 5, p. 496-508 13 p.

Research output: Contribution to journalArticle

Biofuels
biofuels
biofuel
Sugars
sugar

The Sugarcane Genome Challenge: Strategies for Sequencing a Highly Complex Genome

Souza, G. M., Berges, H., Bocs, S., Casu, R., D'Hont, A., Ferreira, J. E., Henry, R., Ming, R. R., Potier, B., Van Sluys, M. A., Vincentz, M. & Paterson, A. H., Dec 1 2011, In : Tropical Plant Biology. 4, 3-4, p. 145-156 12 p.

Research output: Contribution to journalArticle

Saccharum
sugarcane
Genome
genome
cultivars

The theoretical limit to plant productivity

Delucia, E. H., Gomez-Casanovas, N., Greenberg, J. A., Hudiburg, T. W., Kantola, I. B., Long, S. P., Miller, A. D., Ort, D. R. & Parton, W. J., Aug 19 2014, In : Environmental Science and Technology. 48, 16, p. 9471-9477 7 p.

Research output: Contribution to journalArticle

net primary production
Productivity
productivity
Crops
Biomass

The transcription factor ultraspiracle influences honey bee social behavior and behavior-related gene expression

Ament, S. A., Wang, Y., Chen, C. C., Blatti, C. A., Hong, F., Liang, Z. S., Negre, N., White, K. P., Rodriguez-Zas, S. L., Mizzen, C. A., Sinha, S., Zhong, S. & Robinson, G. E., Mar 1 2012, In : PLoS genetics. 8, 3, e1002596.

Research output: Contribution to journalArticle

Fat Body
Honey
Social Behavior
Gene Regulatory Networks
Bees

The Transition from Primary siRNAs to Amplified Secondary siRNAs That Regulate Chalcone Synthase During Development of Glycine max Seed Coats

Cho, Y. B., Jones, S. I. & Vodkin, L. O., Oct 21 2013, In : PloS one. 8, 10, e76954.

Research output: Contribution to journalArticle

naringenin-chalcone synthase
small interfering RNA
Soybeans
Glycine
Small Interfering RNA

The use of antimicrotubule herbicides for the production of doubled haploid plants from anther-derived maize callus

Wan, Y., Duncan, D. R., Rayburn, A. L., Petolino, J. F. & Widholm, J. M., Feb 1991, In : Theoretical And Applied Genetics. 81, 2, p. 205-211 7 p.

Research output: Contribution to journalArticle

Haploidy
Bony Callus
doubled haploids
Herbicides
anthers

The use of cell-free systems in plant activation studies

Gentile, J. M. & Plewa, M. J., Feb 1988, In : Mutation Research - Fundamental and Molecular Mechanisms of Mutagenesis. 197, 2, p. 173-182 10 p.

Research output: Contribution to journalArticle

Mutagenicity Tests
Cell Fractionation
Peroxidases
Plant Proteins
Subcellular Fractions

The use of living mulches for weed management in hot pepper and okra

Biazzo, J. & Masiunas, J. B., Jul 21 2000, In : Journal of Sustainable Agriculture. 16, 1, p. 59-79 21 p.

Research output: Contribution to journalArticle

live mulches
Weed control
hot peppers
okra
weed control