Research Output 1975 2020

An integrated cytogenetic and physical map reveals unevenly distributed recombination spots along the papaya sex chromosomes

Wai, C. M., Moore, P. H., Paull, R. E., Ming, R. R. & Yu, Q., Aug 1 2012, In : Chromosome Research. 20, 6, p. 753-767 15 p.

Research output: Contribution to journalArticle

Carica
Sex Chromosomes
Cytogenetics
Genetic Recombination
Centromere
Steam
Chlorophyll
water vapor
Fluorescence
carbon dioxide

An investigation of bone marrow and testicular cells in vivo using the comet assay

Anderson, D., Dhawan, A., Yu, T. W. & Plewa, M. J., Oct 1 1996, In : Mutation Research - Genetic Toxicology. 370, 3-4, p. 159-174 16 p.

Research output: Contribution to journalArticle

Comet Assay
Bone Marrow Cells
Assays
Bone
Ethyl Methanesulfonate

An investigation of some Turkish herbal medicines in Salmonella typhimurium and in the COMET assay in human lymphocytes

Basaran, A. A., Yu, T. W., Plewa, M. J. & Anderson, D., Sep 27 1996, In : Teratogenesis Carcinogenesis and Mutagenesis. 16, 2, p. 125-138 14 p.

Research output: Contribution to journalArticle

Salmonella
Lymphocytes
Herbal Medicine
Salmonella typhimurium
Medicinal Plants

An investigation of widespread ozone damage to the soybean crop in the upper Midwest determined from ground-based and satellite measurements

Fishman, J., Creilson, J. K., Parker, P. A., Ainsworth, E., Vining, G. G., Szarka, J., Booker, F. L. & Xu, X., Jun 1 2010, In : Atmospheric Environment. 44, 18, p. 2248-2256 9 p.

Research output: Contribution to journalArticle

soybean
ozone
damage
crop
open-top chamber

An in vitro approach to investigate medicinal chemical synthesis by three herbal plants

Smith, M. A. L., Kobayashi, H., Gawienowski, M. & Briskin, D. P., Jan 1 2002, In : Plant Cell, Tissue and Organ Culture. 70, 1, p. 105-111 7 p., 405964.

Research output: Contribution to journalArticle

kava
hypericin
cell culture
phytopharmaceuticals
synthesis

An in vitro method for screening for the presence of the pat-2 gene in tomatoes (Lycopersicon esculentum Mill.)

Young, T. E., Juvik, J. A., Sullivan, J. G. & Skirvin, R. M., Jan 1 1990, In : Plant Cell Reports. 8, 9, p. 538-541 4 p.

Research output: Contribution to journalArticle

Solanum lycopersicum var. lycopersicum
tomatoes
screening
heterozygosity
plant ovary

An In Vitro Method to Rescue Embryos of Horseradish, a Reputedly Sterile Plant

Ozgur, M., Shehata, A. M., Skirvin, R. M., Norton, M. A., Mulwa, R. M. S., Uchanski, M., Hamblin, A. M. & Babadoost, M., Dec 2 2004, In : Journal of Vegetable Crop Production. 10, 2, p. 99-105 7 p.

Research output: Contribution to journalArticle

Armoracia
horseradish
embryo (plant)
Embryonic Structures
Seedlings
Ozone
Photosynthesis
Soybeans
ozone
photosynthesis

Annotation of protein domains reveals remarkable conservation in the functional make up of proteomes across superkingdoms

Nasir, A., Naeem, A., Khan, M. J., Lopez-Nicora, H. D. & Caetano-Anollés, G., Dec 1 2011, In : Genes. 2, 4, p. 869-911 43 p.

Research output: Contribution to journalArticle

Proteome
Genome
Bacteria
Nanoarchaeota
Proteins
Nonlinear Dynamics
Xenobiotics
foliar application
xenobiotics
simulation models
Nonlinear Dynamics
plant characteristics
Xenobiotics
foliar application
xenobiotics

A nonlinear dynamic simulation model for xenobiotic transport and whole plant allocation following foliar application I. Conceptual foundation for model development

Satchivi, N. M., Stoller, E. W., Wax, L. M. & Briskin, D. P., Jan 1 2000, In : Pesticide Biochemistry and Physiology. 68, 2, p. 67-84 18 p.

Research output: Contribution to journalArticle

Phloem
Nonlinear Dynamics
Xenobiotics
foliar application
xenobiotics

A nonlinear dynamic simulation model for xenobiotic transport and whole plant allocation following foliar application II. Model validation

Satchivi, N. M., Stoller, E. W., Wax, L. M. & Briskin, D. P., Jan 1 2000, In : Pesticide Biochemistry and Physiology. 68, 2, p. 85-95 11 p.

Research output: Contribution to journalArticle

Nonlinear Dynamics
model validation
Herbicides
Xenobiotics
foliar application

A novel, multiplexed, probe-based quantitative PCR assay for the soybean rootand stem-rot pathogen, Phytophthora sojae, utilizes its transposable element

Haudenshield, J. S., Song, J. Y. & Hartman, G. L., Apr 2017, In : PloS one. 12, 4, e0176567.

Research output: Contribution to journalArticle

Phytophthora
Phytophthora sojae
stem rot
DNA Transposable Elements
Pathogens

A novel dynamic impact approach (DIA) for functional analysis of time-course omics studies: Validation using the bovine mammary transcriptome

Bionaz, M., Periasamy, K., Rodriguez-Zas, S. L., Hurley, W. L. & Loor, J. J., Mar 16 2012, In : PloS one. 7, 3, e32455.

Research output: Contribution to journalArticle

Functional analysis
Validation Studies
Transcriptome
transcriptome
breasts

A novel flavivirus in the soybean cyst nematode

Bekal, S., Domier, L. L., Gonfa, B., McCoppin, N. K., Lambert, K. N. & Bhalerao, K., Jun 2014, In : Journal of General Virology. 95, PART 6, p. 1272-1280 9 p.

Research output: Contribution to journalArticle

Flavivirus
Soybeans
Cysts
Viruses
Pestivirus

A novel high-throughput multi-parameter flow cytometry based method for monitoring and rapid characterization of microbiome dynamics in anaerobic systems

Dhoble, A. S., Bekal, S., Dolatowski, W., Yanz, C., Lambert, K. N. & Bhalerao, K. D., Nov 1 2016, In : Bioresource Technology. 220, p. 566-571 6 p.

Research output: Contribution to journalArticle

Flow cytometry
flow cytometry
Throughput
Monitoring
monitoring

A novel picornavirus-like genome from transcriptome sequencing of sugar beet cyst nematode represents a new putative genus

Lin, J., Ye, R., Thekke-Veetil, T., Staton, M. E., Arelli, P. R., Bernard, E. C., Hewezi, T., Domier, L. L. & Hajimorad, M. R., Oct 2018, In : Journal of General Virology. 99, 10, p. 1418-1424 7 p., 001139.

Research output: Contribution to journalArticle

Picornaviridae
Beta vulgaris
Transcriptome
Cysts
Genome

A novel promoter from soybean that is active in a complex developmental pattern with and without its proximal 650 base pairs

Strömvik, M. V., Sundararaman, V. P. & Vodkin, L. O., Sep 1 1999, In : Plant Molecular Biology. 41, 2, p. 217-231 15 p.

Research output: Contribution to journalArticle

Soybeans
Arabidopsis
Base Pairing
promoter regions
soybeans

A novel receptor-like kinase involved in fungal pathogen defence in Arabidopsis thaliana

Ray, J., Yang, X., Kong, F., Guo, T., Deng, F., Clough, S. J. & Ramonell, K., Aug 2018, In : Journal of Phytopathology. 166, 7-8, p. 506-515 10 p.

Research output: Contribution to journalArticle

Plant Immunity
Arabidopsis
phosphotransferases (kinases)
Chitin
Phosphotransferases

An overnight chill induces a delayed inhibition of photosynthesis at midday in mango (Mangifera indica L.)

Allen, D. J., Ratner, K., Giller, Y. E., Gussakovsky, E. E., Shahak, Y. & Ort, D. R., Dec 1 2000, In : Journal of experimental botany. 51, 352, p. 1893-1902 10 p.

Research output: Contribution to journalArticle

Mangifera
Chills
Mangifera indica
Photosynthesis
Lycopersicon esculentum

Antagonism of Trichoderma-based biofungicides against Brazilian and North American isolates of Sclerotinia sclerotiorum and growth promotion of soybean

Macena, A. M. F., Kobori, N. N., Mascarin, G. M., Vida, J. B. & Hartman, G. L., Jan 1 2019, (Accepted/In press) In : BioControl.

Research output: Contribution to journalArticle

biopesticides
Sclerotinia sclerotiorum
growth promotion
Trichoderma
thiophanate-methyl
Ozone
Soybeans
ozone
developmental stages
soybeans
fish roe
Perches
Percidae
Etheostoma
Perciformes

Antimutagenic activity of chemical fractions isolated from a commercial soybean processing by-product

Plewa, M. J., Wagner, E. D., Berhow, M. A., Conway, A., Rayburn, A. L. & Anderson, D., May 25 1999, In : Teratogenesis Carcinogenesis and Mutagenesis. 19, 2, p. 121-135 15 p.

Research output: Contribution to journalArticle

Acetoxyacetylaminofluorene
Soybeans
Byproducts
Lymphocytes
2-amino-3-methylimidazo(4,5-f)quinoline

Antimutagenicity of three isomers of aminobenzoic acid in Salmonella typhimurium

Gichner, T., Voutsinas, G., Patrineli, A., Kappas, A. & Plewa, M. J., Sep 1 1994, In : Mutation Research Regular Papers. 309, 2, p. 201-210 10 p.

Research output: Contribution to journalArticle

Aminobenzoates
Salmonella typhimurium
4-Aminobenzoic Acid
ortho-Aminobenzoates
Nitrosoguanidines

Antioxidant and antimicrobial activities of crude sorghum extract

Kil, H. Y., Seong, E. S., Ghimire, B. K., Chung, I. M., Kwon, S. S., Goh, E. J., Heo, K., Kim, M. J., Lim, J. D., Lee, D. & Yu, C. Y., Aug 15 2009, In : Food chemistry. 115, 4, p. 1234-1239 6 p.

Research output: Contribution to journalArticle

Sorghum
Complex Mixtures
Sorghum (Poaceae)
Antioxidants
anti-infective agents

Antioxidant capacity of different broccoli (Brassica oleracea) genotypes using the oxygen radical absorbance capacity (ORAC) assay

Kurilich, A. C., Jeffery, E. H., Juvik, J. A., Wallig, M. A. & Klein, B. P., Aug 28 2002, In : Journal of Agricultural and Food Chemistry. 50, 18, p. 5053-5057 5 p.

Research output: Contribution to journalArticle

oxygen radical absorbance capacity
Brassica
broccoli
Brassica oleracea
Assays

Antisense-overexpression of the MsCOMT gene induces changes in lignin and total phenol contents in transgenic tobacco plants

Seong, E. S., Yoo, J. H., Lee, J. G., Kim, H. Y., Hwang, I. S., Heo, K., Kim, J. K., Lim, J. D., Sacks, E. J. & Yu, C. Y., Feb 1 2013, In : Molecular Biology Reports. 40, 2, p. 1979-1986 8 p.

Research output: Contribution to journalArticle

caffeate O-methyltransferase
Lignin
Genetically Modified Plants
Phenol
Tobacco

A photoprotective role for O2 as an alternative electron sink in photosynthesis?

Ort, D. R. & Baker, N. R., Jan 1 2002, In : Current opinion in plant biology. 5, 3, p. 193-198 6 p.

Research output: Contribution to journalReview article

photostability
ascorbate peroxidase
photosystem II
electrons
photosynthesis

A Phylogenomic Census of Molecular Functions Identifies Modern Thermophilic Archaea as the Most Ancient Form of Cellular Life

Nasir, A., Kim, K. M. & Caetano-Anollés, G., Jan 1 2014, In : Archaea. 2014, 706468.

Research output: Contribution to journalArticle

Gene Ontology
Archaea
Censuses
census
genome

A phylogenomic data-driven exploration of viral origins and evolution

Nasir, A. & Caetano-Anollés, G., Jan 1 2015, In : Science Advances. 1, 8, 1500527.

Research output: Contribution to journalArticle

Viruses
Proteome
Replicon
Proteomics
Genome

A phylogenomic reconstruction of the protein world based on a genomic census of protein fold architecture

Wang, M., Boca, S. M., Kalelkar, R., Mittenthal, J. E. & Caetano-Anolles, G., Jan 1 2006, In : Complexity. 12, 1, p. 27-40 14 p.

Research output: Contribution to journalArticle

Censuses
Proteins
Protein Folding
Molecular Structure
Organizations

A physical map of the papaya genome with integrated genetic map and genome sequence

Yu, Q., Tong, E., Skelton, R. L., Bowers, J. E., Jones, M. R., Murray, J. E., Hou, S., Guan, P., Acob, R. A., Luo, M. C., Moore, P. H., Alam, M., Paterson, A. H. & Ming, R., Aug 7 2009, In : BMC genomics. 10, 1 p., 1471.

Research output: Contribution to journalArticle

Carica
Genome
Genetic Recombination
Sex Chromosomes
Genomics

A physical model-based method for retrieving urban land surface temperatures under cloudy conditions

Fu, P., Xie, Y., Weng, Q., Myint, S., Meacham-Hensold, K. & Bernacchi, C., Sep 1 2019, In : Remote Sensing of Environment. 230, 111191.

Research output: Contribution to journalArticle

physical models
surface temperature
land surface
Mean square error
Temperature
Salix
Climate
climate
Temperature
Photosynthesis

A point mutation in atpC1 raises the redox potential of the Arabidopsis chloroplast ATP synthase γ-subunit regulatory disulfide above the range of thioredoxin modulation

Wu, G., Ortiz-Flores, G., Ortiz-Lopez, A. & Ort, D. R., Dec 21 2007, In : Journal of Biological Chemistry. 282, 51, p. 36782-36789 8 p.

Research output: Contribution to journalArticle

Chloroplast Proton-Translocating ATPases
Thioredoxins
Point Mutation
Arabidopsis
Disulfides
Quantitative Trait Loci
Brassica
harvest date
broccoli
chromosome mapping

A population structure and genome-wide association analysis on the USDA soybean germplasm collection

Bandillo, N., Jarquin, D., Song, Q., Nelson, R., Cregan, P., Specht, J. & Lorenz, A., Nov 2015, In : Plant Genome. 8, 3

Research output: Contribution to journalArticle

United States Department of Agriculture
Genome-Wide Association Study
germplasm conservation
Soybeans
USDA

Apparent nitrogen recovery from fall-applied ammoniated phosphates and ammonium sulfate fertilizers

Fernández, F. G., Hoeft, R. G., Randall, G. W., Vetsch, J., Greer, K., Nafziger, E. D. & Villamil, M. B., Nov 1 2010, In : Agronomy Journal. 102, 6, p. 1674-1681 8 p.

Research output: Contribution to journalArticle

monoammonium phosphate
ammonium sulfate
field capacity
fertilizers
phosphates

Application of DRIFTS, 13C NMR, and py-MBMS to Characterize the Effects of Soil Science Oxidation Assays on Soil Organic Matter Composition in a Mollic Xerofluvent

Margenot, A. J., Calderón, F. J., Magrini, K. A. & Evans, R. J., Jul 1 2017, In : Applied Spectroscopy. 71, 7, p. 1506-1518 13 p.

Research output: Contribution to journalArticle

soil science
Molecular beams
Biological materials
molecular beams
Fourier transform infrared spectroscopy

Application of sequence-independent amplification (SIA) for the identification of RNA viruses in bioenergy crops

Agindotan, B. O., Ahonsi, M. O., Domier, L. L., Gray, M. E. & Bradley, C. A., Oct 1 2010, In : Journal of Virological Methods. 169, 1, p. 119-128 10 p.

Research output: Contribution to journalArticle

RNA Viruses
Panicum
Viruses
Mosaic Viruses
Tymoviridae

Application of SWAT to a tile drained watershed in East-Central Illinois

Kent, G. W., Rodriguez, L. F., Cooke, R. A. C. & Czapar, G. F., Jan 1 2012, American Society of Agricultural and Biological Engineers Annual International Meeting 2012, ASABE 2012. American Society of Agricultural and Biological Engineers, p. 1057-1075 19 p. (American Society of Agricultural and Biological Engineers Annual International Meeting 2012, ASABE 2012; vol. 2).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Soil and Water Assessment Tool model
tiles
Tile
Watersheds
Water quality

Application of thiophanate-methyl at different host growth stages for management of sclerotinia stem rot in soybean

Mueller, D. S., Bradley, C. A., Grau, C. R., Gaska, J. M., Kurle, J. E. & Pedersen, W. L., Oct 1 2004, In : Crop Protection. 23, 10, p. 983-988 6 p.

Research output: Contribution to journalArticle

thiophanate-methyl
Sclerotinia
stem rot
developmental stages
soybeans

Application of visible and near-infrared spectroscopy to classification of Miscanthus species

Jin, X., Chen, X., Xiao, L., Shi, C., Chen, L., Yu, B., Yi, Z., Yoo, J. H., Heo, K., Yu, C. Y., Yamada, T., Sacks, E. J. & Peng, J., Mar 2017, In : PloS one. 12, 4, e0171360.

Research output: Contribution to journalArticle

Miscanthus
Near infrared spectroscopy
Near-Infrared Spectroscopy
near-infrared spectroscopy
Least-Squares Analysis

Applications of genomics in weed science

Gaines, T. A., Tranel, P. J., Fleming, M. B., Patterson, E. L., Küpper, A., Ravet, K., Giacomini, D. A., Gonzalez, S. & Beffa, R., Jan 1 2017, Biology, Physiology and Molecular Biology of Weeds. Jugulam, M. (ed.). CRC Press, p. 185-218 34 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

weed science
Sugar Phosphates
Thymine
Cytosine
Guanine

Application timing and soil factors affect sulfentrazone phytotoxicity to two soybean (Glycine max (L.) Merr.) cultivars

Reiling, K. L., Simmons, F. W., Riechers, D. E. & Steckel, L. E., Mar 1 2006, In : Crop Protection. 25, 3, p. 230-234 5 p.

Research output: Contribution to journalArticle

sulfentrazone
application timing
phytotoxicity
Glycine max
soybeans

Applying an integrated refuge to manage western corn rootworm (Coleoptera: Chrysomelidae): Effects on survival, fitness, and selection pressure

Petzold-Maxwell, J. L., Alves, A. P., Estes, R. E., Gray, M. E., Meinke, L. J., Shields, E. J., Thompson, S. D., Tinsley, N. A. & Gassmann, A. J., Oct 21 2013, In : Journal of economic entomology. 106, 5, p. 2195-2207 13 p.

Research output: Contribution to journalArticle

Diabrotica virgifera virgifera
Chrysomelidae
refuge
Bacillus thuringiensis
fitness

A process-based model to predict the effects of climatic change on leaf isoprene emission rates

Martin, M. J., Stirling, C. M., Humphries, S. W. & Long, S. P., Jul 1 2000, In : Ecological Modelling. 131, 2-3, p. 161-174 14 p.

Research output: Contribution to journalArticle

isoprene
climate change
carbon dioxide
photon flux density
temperature