Research Output 1975 2020

Amplified fragment length polymorphism markers linked to a major quantitative trait locus controlling scab resistance in wheat

Bai, G., Kolb, F. L., Shaner, G. & Domier, L. L., Apr 1999, In : Phytopathology. 89, 4, p. 343-348 6 p.

Research output: Contribution to journalArticle

amplified fragment length polymorphism
quantitative trait loci
inflorescences
inbred lines
wheat

A multi-biome gap in understanding of crop and ecosystem responses to elevated CO 2

Leakey, A., Bishop, K. A. & Ainsworth, E., Jun 1 2012, In : Current opinion in plant biology. 15, 3, p. 228-236 9 p.

Research output: Contribution to journalReview article

ecosystems
crops
environmental factors
temperate zones
subtropics

A multiplexed immunofluorescence method identifies Phakopsora pachyrhizi urediniospores and determines their viability

Vittal, R., Haudenshield, J. S. & Hartman, G. L., Dec 1 2012, In : Phytopathology. 102, 12, p. 1143-1152 10 p.

Research output: Contribution to journalArticle

Phakopsora pachyrhizi
fluorescent antibody technique
viability
fluorescein
spores

A Multi-Population Consensus Genetic Map Reveals Inconsistent Marker Order among Maps Likely Attributed to Structural Variations in the Apple Genome

Khan, M. A., Han, Y., Zhao, Y. F., Troggio, M. & Korban, S. S., Nov 5 2012, In : PloS one. 7, 11, e47864.

Research output: Contribution to journalArticle

Population Genetics
Malus
apples
Genes
Genome

A Multistate Study of the Association Between Glyphosate Resistance and EPSPS Gene Amplification in Waterhemp (Amaranthus tuberculatus)

Chatham, L. A., Bradley, K. W., Kruger, G. R., Martin, J. R., Owen, M. D. K., Peterson, D. E., Mithila, J. & Tranel, P. J., Jul 1 2015, In : Weed Science. 63, 3, p. 569-577 9 p.

Research output: Contribution to journalArticle

Amaranthus tuberculatus
gene amplification
glyphosate
phosphates
Amaranthus palmeri

AmyR Is a Novel Negative Regulator of Amylovoran Production in Erwinia amylovora

Wang, D., Korban, S. S., Pusey, P. L. & Zhao, Y., Sep 18 2012, In : PloS one. 7, 9, e45038.

Research output: Contribution to journalArticle

Erwinia amylovora
Genes
exopolysaccharides
mutants
knockout mutants

An adaptive management approach to improve water quality at a model dairy farm in Vermont, USA

Kominami, H. & Lovell, S. T., Mar 1 2012, In : Ecological Engineering. 40, p. 131-143 13 p.

Research output: Contribution to journalArticle

Dairies
adaptive management
Farms
Water quality
farm

Anaerobic gene expression and flooding tolerance in maize

Sachs, M. M., Subbaiah, C. C. & Saab, I. N., Jan 1 1996, In : Journal of experimental botany. 47, 294, p. 1-15 15 p.

Research output: Contribution to journalReview article

flooding tolerance
Zea mays
Gene Expression
xylose isomerase
gene expression

An Affinity-Effect Relationship for Microbial Communities in Plant-Soil Feedback Loops

Lou, Y., Clay, S. A., Davis, A. S., Dille, A., Felix, J., Ramirez, A. H. M., Sprague, C. L. & Yannarell, A. C., May 2014, In : Microbial Ecology. 67, 4, p. 866-876 11 p.

Research output: Contribution to journalArticle

Helianthus annuus
microbial communities
microbial community
soil
Ambrosia trifida

An agent-based metapopulation model simulating virus-based biocontrol of Heterodera glycines

Anderson, S., Soman, C., Bekal, S., Domier, L., Lambert, K. & Bhalerao, K., Jan 1 2018, In : Journal of Nematology. 50, 2, p. 79-90 12 p.

Research output: Contribution to journalArticle

Heterodera glycines
biological control
virulence
viruses
Nematoda

An alternative sigma factor cascade regulates expression of type III secretion system in Erwinia amylovora

Zhao, Y., Ancona, V., Li, W. & Lee, J. H., Oct 29 2014, XIII International Workshop on Fire Blight. Smits, T. H. M., Holliger, E. & Rezzonico, F. (eds.). International Society for Horticultural Science, p. 155-160 6 p. (Acta Horticulturae; vol. 1056).

Research output: Chapter in Book/Report/Conference proceedingChapter

sigma factors
type III secretion system
Erwinia amylovora
DNA-directed RNA polymerase
gene expression

Analyses of pig genomes provide insight into porcine demography and evolution

Groenen, M. A. M., Archibald, A. L., Uenishi, H., Tuggle, C. K., Takeuchi, Y., Rothschild, M. F., Rogel-Gaillard, C., Park, C., Milan, D., Megens, H. J., Li, S., Larkin, D. M., Kim, H., Frantz, L. A. F., Caccamo, M., Ahn, H., Aken, B. L., Anselmo, A., Anthon, C., Auvil, L. & 116 others, Badaoui, B., Beattie, C. W., Bendixen, C., Berman, D., Blecha, F., Blomberg, J., Bolund, L., Bosse, M., Botti, S., Bujie, Z., Bystrom, M., Capitanu, B., Carvalho-Silva, D., Chardon, P., Chen, C., Cheng, R., Choi, S. H., Chow, W., Clark, R. C., Clee, C., Crooijmans, R. P. M. A., Dawson, H. D., Dehais, P., De Sapio, F., Dibbits, B., Drou, N., Du, Z. Q., Eversole, K., Fadista, J., Fairley, S., Faraut, T., Faulkner, G. J., Fowler, K. E., Fredholm, M., Fritz, E., Gilbert, J. G. R., Giuffra, E., Gorodkin, J., Griffin, D. K., Harrow, J. L., Hayward, A., Howe, K., Hu, Z. L., Humphray, S. J., Hunt, T., Hornshoøj, H., Jeon, J. T., Jern, P., Jones, M., Jurka, J., Kanamori, H., Kapetanovic, R., Kim, J., Kim, J. H., Kim, K. W., Kim, T. H., Larson, G., Lee, K., Lee, K. T., Leggett, R., Lewin, H. A., Li, Y., Liu, W., Loveland, J. E., Lu, Y., Lunney, J. K., Ma, J., Madsen, O., Mann, K., Matthews, L., McLaren, S., Morozumi, T., Murtaugh, M. P., Narayan, J., Nguyen, D. T., Ni, P., Oh, S. J., Onteru, S., Panitz, F., Park, E. W., Park, H. S., Pascal, G., Paudel, Y., Perez-Enciso, M., Ramirez-Gonzalez, R., Reecy, J. M., Rodriguez-Zas, S., Rohrer, G. A., Rund, L., Sang, Y., Schachtschneider, K., Schraiber, J. G., Schwartz, J., Scobie, L., Scott, C., Searle, S., Servin, B., Southey, B. R., Sperber, G., Stadler, P., Sweedler, J. V., Tafer, H., Thomsen, B., Wali, R., Wang, J., Wang, J., White, S., Xu, X., Yerle, M., Zhang, G., Zhang, J., Zhang, J., Zhao, S., Rogers, J., Churcher, C. & Schook, L. B., Nov 15 2012, In : Nature. 491, 7424, p. 393-398 6 p.

Research output: Contribution to journalArticle

Sus scrofa
Swine
Demography
Genome
Smell

Analysis, occurrence, and toxicity of haloacetaldehydes in drinking waters: Iodoacetaldehyde as an emerging disinfection by-product

Postigo, C., Jeong, C. H., Richardson, S. D., Wagner, E. D., Plewa, M. J., Simmons, J. E. & Barcelo, D., Jan 1 2015, Recent Advances in Disinfection By-Products. Xie, Y., Mitch, B., Karanfil, T. & Westerhoff, P. (eds.). American Chemical Society, p. 25-43 19 p. (ACS Symposium Series; vol. 1190).

Research output: Chapter in Book/Report/Conference proceedingChapter

Disinfection
Potable water
Drinking Water
Byproducts
Toxicity

Analysis of active nucleolus organizing regions in polyploid prairie cordgrass (Spartina pectinata Link) by silver staining

Kim, S., Lee, D. K. & Rayburn, A. L., Jan 1 2015, In : Cytologia. 80, 2, p. 249-258 10 p.

Research output: Contribution to journalArticle

Spartina pectinata
Silver Staining
Polyploidy
Ploidies
cell nucleolus

Analysis of a horizontally transferred pathway involved in vitamin B 6 biosynthesis from the soybean cyst nematode Heterodera glycines

Craig, J. P., Bekal, S., Hudson, M., Domier, L., Niblack, T. & Lambert, K. N., Oct 1 2008, In : Molecular biology and evolution. 25, 10, p. 2085-2098 14 p.

Research output: Contribution to journalArticle

Horizontal Gene Transfer
Heterodera glycines
Vitamin B 6
pyridoxine
cyst

Analysis of Alternative Splicing Landscape in Pineapple (Ananas comosus)

Wai, C. M., Powell, B., Ming, R. & Min, X. J., Sep 1 2016, In : Tropical Plant Biology. 9, 3, p. 150-160 11 p.

Research output: Contribution to journalArticle

Ananas
Ananas comosus
alternative splicing
Alternative Splicing
pineapples

Analysis of a quantitative trait locus allele from wild soybean that increases seed protein concentration in soybean

Sebolt, A. M., Shoemaker, R. C. & Diers, B. W., Oct 26 2000, In : Crop Science. 40, 5, p. 1438-1444 7 p.

Research output: Contribution to journalArticle

Glycine soja
quantitative trait loci
soybeans
alleles
seeds

Analysis of economic and social costs of growing Petunia × Hybrida in a greenhouse production system using alternative containers

Brumfield, R. G., Kenny, L. B., Devincentis, A. J., Koeser, A. K., Verlinden, S., Both, A. J., Bi, G., Lovell, S. T. & Stewart, J. R., Aug 2018, In : HortScience. 53, 8, p. 1179-1185 7 p.

Research output: Contribution to journalArticle

Petunia hybrida
greenhouse production
economic analysis
containers
production technology

Analysis of expressed sequence tags and alternative splicing genes in sacred lotus (Nelumbo nucifera Gaertn.)

VanBuren, R., Walters, B., Ming, R. R. & Min, X. J., Sep 24 2013, In : Plant OMICS. 6, 4, p. 311-317 7 p.

Research output: Contribution to journalArticle

Nelumbo nucifera
Lotus
alternative splicing
expressed sequence tags
genes

Analysis of gene expression during Brassica seed germination using a cross-species microarray platform

Hudson, M. E., Bruggink, T., Chang, S. H., Yu, W., Han, B., Wang, X., Van Der Toorn, P. & Zhu, T., Jul 1 2007, In : Crop Science. 47, SUPPL. 2, p. S-96-S-112

Research output: Contribution to journalArticle

Brassica
seed germination
gene expression
hybridization
Arabidopsis

Analysis of genetic diversity of lychee (Litchi chinensis Sonn.) and wild forest relatives in the Sapindaceae from Vietnam using microsatellites

Tran, H., Kanzaki, S., Triest, L., Hormaza, I., Kuk, N. J., Ming, R., Bousquet, J., Khasa, D. & Van Damme, P., Dec 1 2019, In : Genetic Resources and Crop Evolution. 66, 8, p. 1653-1669 17 p.

Research output: Contribution to journalArticle

Sapindaceae
Litchi
Litchi chinensis
Vietnam
Microsatellite Repeats

Analysis of l-alanine:2-oxoglutarate aminotransferase isozymes in maize

Watson, N. R., Peschke, V. M., Russell, D. A. & Sachs, M. M., Aug 1 1992, In : Biochemical Genetics. 30, 7-8, p. 371-383 13 p.

Research output: Contribution to journalArticle

transaminases
Alanine Transaminase
alanine
Isoenzymes
Zea mays
Comet Assay
Mutagens
Cricetulus
Ovary
Flow Cytometry

Analysis of nucleotide sequence data using mixed model methodology

Rodriguez-Zas, S. L. & Southey, B. R., Oct 23 2001, In : Genetic Epidemiology. 21, SUPPL. 1, p. S638-S642

Research output: Contribution to journalArticle

Founder Effect
Survival Analysis
Age of Onset
Genes

Analysis of papaya BAC end sequences reveals first insights into the organization of a fruit tree genome

Lai, C. W. J., Yu, Q., Hou, S., Skelton, R. L., Jones, M. R., Lewis, K. L. T., Murray, J., Eustice, M., Guan, P., Agbayani, R., Moore, P. H., Ming, R. R. & Presting, G. G., Jul 1 2006, In : Molecular Genetics and Genomics. 276, 1, p. 1-12 12 p.

Research output: Contribution to journalArticle

Carica
Fruit
Genome
Arabidopsis
Populus

Analysis of soybean protein-derived peptides and the effect of cultivar, environmental conditions, and processing on lunasin concentration in soybean and soy products

Wang, W., Dia, V. P., Vasconez, M., De Mejia, E. G. & Nelson, R. L., Jul 1 2008, In : Journal of AOAC International. 91, 4, p. 936-946 11 p.

Research output: Contribution to journalArticle

soybean products
Soybean Proteins
soy protein
Soybeans
peptide

Analysis of spontaneous frameshift mutations in REV1 and rev1-1 strains of Saccharomyces cerevisiae

Kalinowski, D. P., Larimer, F. W. & Plewa, M. J., Sep 1995, In : Mutation Research - Fundamental and Molecular Mechanisms of Mutagenesis. 331, 1, p. 149-159 11 p.

Research output: Contribution to journalArticle

Frameshift Mutation
Saccharomyces cerevisiae
Polymerase Chain Reaction
Mutation
Plasmids

Analysis of the dynamics of adaptation to transgenic corn and crop rotation by western corn rootworm (Coleoptera: Chrysomelidae) using a daily time-step model

Crowder, D. W., Onstad, D. W., Gray, M. E., Pierce, C. M. F., Hager, A. G., Ratcliffe, S. T. & Steffey, K. L., Apr 2005, In : Journal of economic entomology. 98, 2, p. 534-551 18 p.

Research output: Contribution to journalArticle

Diabrotica virgifera virgifera
crop rotation
Chrysomelidae
maize
genetically modified organisms

Analysis of the genotoxicity of municipal sewage sludge extracts with sister chromatid exchange in cultured human lymphocytes

Engl, S., Plewa, M. J. & Hopke, P. K., Nov 1 1988, In : Water, Air, and Soil Pollution. 42, 1-2, p. 117-128 12 p.

Research output: Contribution to journalArticle

Lymphocytes
genotoxicity
Sewage sludge
Cells
Chromosomes

Analysis of the genotoxicity of municipal solid waste incinerator ash

Silkowski, M. A., Smith, S. R. & Plewa, M. J., Jan 15 1992, In : Science of the Total Environment, The. 111, 2-3, p. 109-124 16 p.

Research output: Contribution to journalArticle

Ashes
Refuse incinerators
Municipal solid waste
genotoxicity
municipal solid waste

Analysis of the manage drain concentration database to evaluate agricultural management effects on drainage water nutrient concentrations

Hertzberger, A., Pittelkow, C. M., Harmel, R. D. & Christianson, L. E., Jan 1 2019, In : Transactions of the ASABE. 62, 4, p. 929-939 11 p.

Research output: Contribution to journalArticle

agricultural management
drainage water
Phosphorus
Nutrients
Drainage

Analysis of the mitochondrial genome in Hypomyces aurantius reveals a novel twintron complex in fungi

Deng, Y., Zhang, Q., Ming, R., Lin, L., Lin, X., Lin, Y., Li, X., Xie, B. & Wen, Z., Jul 2016, In : International journal of molecular sciences. 17, 7, 1049.

Research output: Contribution to journalArticle

Mitochondrial Genome
fungi
genome
Fungi
genes

Analysis of xylem exudate by ion chromatography: Influence of nitrogen and residue management on corn exudate composition

Teyker, R. H., Galerani, P. R. & Nafziger, E. D., May 1 1991, In : Communications in Soil Science and Plant Analysis. 22, 7-8, p. 785-793 9 p.

Research output: Contribution to journalArticle

ion chromatography
ion exchange chromatography
xylem
maize
ionic composition

Analytical workflow profiling gene expression in murine macrophages

Nixon, S. E., Gonzalez-Peña, D., Lawson, M. A., McCusker, R. H., Hernandez, A. G., O'Connor, J. C., Dantzer, R., Kelley, K. W. & Rodriguez-Zas, S. L., Apr 25 2015, In : Journal of Bioinformatics and Computational Biology. 13, 2, 1550010.

Research output: Contribution to journalArticle

Workflow
Macrophages
Gene Expression Profiling
Gene expression
RNA

An analysis of ozone damage to historical maize and soybean yields in the United States

McGrath, J. M., Betzelberger, A. M., Wang, S., Shook, E., Zhu, X. G., Long, S. P. & Ainsworth, E. A., Nov 17 2015, In : Proceedings of the National Academy of Sciences of the United States of America. 112, 46, p. 14390-14395 6 p.

Research output: Contribution to journalArticle

Ozone
Soybeans
Zea mays
Rain
Food Supply

An analysis of survey data by size of the breeding herd for the reproductive management practices of North American sow farms

Knox, R. V., Rodriguez-Zas, S. L., Sloter, N. L., McNamara, K. A., Gall, T. J., Levis, D. G., Safranski, T. J. & Singleton, W. L., Jan 1 2013, In : Journal of animal science. 91, 1, p. 433-445 13 p.

Research output: Contribution to journalArticle

Practice Management
Breeding
sows
herds
farms

An approximate bayesian analysis of somatic cell score curves in holsteins

Rodriguez-Zas, S. L., Gianola, D. & Shook, G. E., Dec 2000, In : Acta Agriculturae Scandinavica A: Animal Sciences. 50, 4, p. 291-299 9 p.

Research output: Contribution to journalArticle

Bayes Theorem
Bayesian theory
somatic cells
Lactation
lactation

An assessment of saltmarsh erosion in Essex, England, with reference to the Dengie Peninsula

Harmsworth, G. C. & Long, S. P., 1986, In : Biological Conservation. 35, 4, p. 377-387 11 p.

Research output: Contribution to journalArticle

salt marshes
saltmarsh
England
erosion
Site of Special Scientific Interest

An assessment of the performance of the logistic mixed model for analyzing binary traits in maize and sorghum diversity panels

Shenstone, E., Cooper, J., Rice, B., Bohn, M., Jamann, T. M. & Lipka, A. E., Nov 2018, In : PloS one. 13, 11, e0207752.

Research output: Contribution to journalArticle

Sorghum
Zea mays
Logistics
Logistic Models
Genome-Wide Association Study

An assessment of true and false positive detection rates of stepwise epistatic model selection as a function of sample size and number of markers

Chen, A. H., Ge, W., Metcalf, W., Jakobsson, E., Mainzer, L. S. & Lipka, A. E., May 1 2019, In : Heredity. 122, 5, p. 660-671 12 p.

Research output: Contribution to journalArticle

Sample Size
Gene Frequency
Zea mays
Nucleotides
Genome

Anastomosis of germ tubes and migration of nuclei in germ tube networks of the soybean rust pathogen, Phakopsora pachyrhizi

Vittal, R., Yang, H. C. & Hartman, G. L., Feb 2012, In : European Journal of Plant Pathology. 132, 2, p. 163-167 5 p.

Research output: Contribution to journalArticle

Phakopsora pachyrhizi
soybean rust
germ tube
pathogens
parasexual cycle

ANATOMICAL VARIATION ALONG THE LENGTH OF THE ZEA MA YS LEAF IN RELATION TO PHOTOSYNTHESIS

MIRANDA, VALENTINE., BAKER, NEIL. R. & LONG, STEPHEN. P., Aug 1981, In : New Phytologist. 88, 4, p. 595-605 11 p.

Research output: Contribution to journalArticle

Zea
Plant Leaves
Photosynthesis
Zea mays
Anatomy

A natural colorant system from corn: Flavone-anthocyanin copigmentation for altered hues and improved shelf life

Chatham, L. A., Howard, J. E. & Juvik, J. A., Jan 1 2019, (Accepted/In press) In : Food chemistry. 310, 125734.

Research output: Contribution to journalArticle

flavone
Anthocyanins
flavones
Zea mays
anthocyanins

An atypical N-ethylmaleimide sensitive factor enables the viability of nematode-resistant Rhg1 soybeans

Bayless, A. M., Zapotocny, R. W., Grunwald, D. J., Amundson, K. K., Diers, B. W. & Bent, A. F., May 8 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 19, p. E4512-E4521

Research output: Contribution to journalArticle

N-Ethylmaleimide-Sensitive Proteins
Soybeans
Glycine
Housekeeping
Disease Resistance
Peptidyl Transferases
ribosomes
Ribosomes
transferases
accretion

Ancestrality and mosaicism of giant viruses supporting the definition of the fourth TRUC of microbes

Colson, P., Levasseur, A., Scola, B. L., Sharma, V., Nasir, A., Pontarotti, P., Caetano-Anollés, G. & Raoult, D., Nov 27 2018, In : Frontiers in Microbiology. 9, NOV, 2668.

Research output: Contribution to journalArticle

Mosaicism
Archaea
Eukaryota
Bacteria
Genes

An efficient method for measuring copy number variation applied to improvement of nematode resistance in soybean

Lee, T. G., Diers, B. W. & Hudson, M., Oct 1 2016, In : Plant Journal. 88, 1, p. 143-153 11 p.

Research output: Contribution to journalArticle

Soybeans
Heterodera glycines
Nematoda
soybeans
assays

A nematode demographics assay in transgenic roots reveals no significant impacts of the Rhg1 locus LRR-Kinase on soybean cyst nematode resistance

Melito, S., Heuberger, A. L., Cook, D., Diers, B. W., MacGuidwin, A. E. & Bent, A. F., Jun 9 2010, In : BMC Plant Biology. 10, 104.

Research output: Contribution to journalArticle

Heterodera glycines
phosphotransferases (kinases)
demographic statistics
leucine
Nematoda

An evaluation of new and established methods to determine T-DNA copy number and homozygosity in transgenic plants

Głowacka, K., Kromdijk, J., Leonelli, L., Niyogi, K. K., Clemente, T. E. & Long, S. P., Apr 1 2016, In : Plant Cell and Environment. 39, 4, p. 908-917 10 p.

Research output: Contribution to journalArticle

Genetically Modified Plants
Southern Blotting
homozygosity
Southern blotting
transgenic plants

An evaluation of the genotoxic properties of herbicides following plant and animal activation

Plewa, M. J., Wagner, E. D., Gentile, G. J. & Gentile, J. M., Jun 1984, In : Mutation Research/Genetic Toxicology. 136, 3, p. 233-245 13 p.

Research output: Contribution to journalArticle

Atrazine
Herbicides
Assays
Animals
Chemical activation