Research Output

2019

Winter hardiness of Miscanthus (II): Genetic mapping for overwintering ability and adaptation traits in three interconnected Miscanthus populations

Dong, H., Liu, S., Clark, L. V., Sharma, S., Gifford, J. M., Juvik, J. A., Lipka, A. E. & Sacks, E. J., May 2019, In : GCB Bioenergy. 11, 5, p. 706-726 21 p.

Research output: Contribution to journalArticle

Winter hardiness of Miscanthus (III): Genome-wide association and genomic prediction for overwintering ability in Miscanthus sinensis

Dong, H., Clark, L. V., Lipka, A. E., Brummer, J. E., Głowacka, K., Hall, M. C., Heo, K., Jin, X., Peng, J., Yamada, T., Ghimire, B. K., Yoo, J. H., Yu, C. Y., Zhao, H., Long, S. P. & Sacks, E. J., Aug 2019, In : GCB Bioenergy. 11, 8, p. 930-955 26 p.

Research output: Contribution to journalArticle

Open Access

Yield response of field-grown soybean exposed to heat waves under current and elevated [CO2]

Thomey, M. L., Slattery, R. A., Köhler, I. H., Bernacchi, C. J. & Ort, D. R., Dec 1 2019, In : Global change biology. 25, 12, p. 4352-4368 17 p.

Research output: Contribution to journalArticle

2018

30 years of progress toward increased biomass yield of switchgrass and big bluestem

Casler, M. D., Vogel, K. P., Lee, D. K., Mitchell, R. B., Adler, P. R., Sulc, R. M., Johnson, K. D., Kallenbach, R. L., Boe, A. R., Mathison, R. D., Cassida, K. A., Min, D. H., Crawford, J. & Moore, K. J., May 1 2018, In : Crop Science. 58, 3, p. 1242-1254 13 p.

Research output: Contribution to journalArticle

Above- and Belowground Prairie Cordgrass Response to Applied Nitrogen on Marginal Land

Hernández, K. A., Owens, V. N., Boe, A., González-Hernández, J. L., Lee, D. & Aberle, E., Jun 1 2018, In : Bioenergy Research. 11, 2, p. 440-448 9 p.

Research output: Contribution to journalReview article

Acibenzolar-S-methyl is associated with yield reduction when used for managing bacterial wilt (Erwinia tracheiphila) in cantaloupe

Egel, D. S., Kleczewski, N. M., Mumtaz, F. & Foster, R., Jul 2018, In : Crop Protection. 109, p. 136-141 6 p.

Research output: Contribution to journalArticle

Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.

Zhang, J., Zhang, X., Tang, H., Zhang, Q., Hua, X., Ma, X., Zhu, F., Jones, T., Zhu, X., Bowers, J., Wai, C. M., Zheng, C., Shi, Y., Chen, S., Xu, X., Yue, J., Nelson, D. R., Huang, L., Li, Z., Xu, H. & 88 others, Zhou, D., Wang, Y., Hu, W., Lin, J., Deng, Y., Pandey, N., Mancini, M., Zerpa, D., Nguyen, J. K., Wang, L., Yu, L., Xin, Y., Ge, L., Arro, J., Han, J. O., Chakrabarty, S., Pushko, M., Zhang, W., Ma, Y., Ma, P., Lv, M., Chen, F., Zheng, G., Xu, J., Yang, Z., Deng, F., Chen, X., Liao, Z., Zhang, X., Lin, Z., Lin, H., Yan, H., Kuang, Z., Zhong, W., Liang, P., Wang, G., Yuan, Y., Shi, J., Hou, J., Lin, J., Jin, J., Cao, P., Shen, Q., Jiang, Q., Zhou, P., Ma, Y., Zhang, X., Xu, R., Liu, J., Zhou, Y., Jia, H., Ma, Q., Qi, R., Zhang, Z., Fang, J., Fang, H., Song, J., Wang, M., Dong, G., Wang, G., Chen, Z., Ma, T., Liu, H., Dhungana, S. R., Huss, S. E., Yang, X., Sharma, A., Trujillo, J. H., Martinez, M. C., Hudson, M., Riascos, J. J., Schuler, M., Chen, L. Q., Braun, D. M., Li, L., Yu, Q., Wang, J., Wang, K., Schatz, M. C., Heckerman, D., Van Sluys, M. A., Souza, G. M., Moore, P. H., Sankoff, D., VanBuren, R., Paterson, A. H., Nagai, C. & Ming, R., Nov 1 2018, In : Nature Genetics. 50, 11, p. 1565-1573 9 p.

Research output: Contribution to journalArticle

An agent-based metapopulation model simulating virus-based biocontrol of Heterodera glycines

Anderson, S., Soman, C., Bekal, S., Domier, L., Lambert, K. & Bhalerao, K., 2018, In : Journal of Nematology. 50, 2, p. 79-90 12 p.

Research output: Contribution to journalArticle

Analysis of economic and social costs of growing Petunia × Hybrida in a greenhouse production system using alternative containers

Brumfield, R. G., Kenny, L. B., Devincentis, A. J., Koeser, A. K., Verlinden, S., Both, A. J., Bi, G., Lovell, S. T. & Stewart, J. R., Aug 2018, In : HortScience. 53, 8, p. 1179-1185 7 p.

Research output: Contribution to journalArticle

An assessment of the performance of the logistic mixed model for analyzing binary traits in maize and sorghum diversity panels

Shenstone, E., Cooper, J., Rice, B., Bohn, M., Jamann, T. M. & Lipka, A. E., Nov 2018, In : PloS one. 13, 11, e0207752.

Research output: Contribution to journalArticle

An atypical N-ethylmaleimide sensitive factor enables the viability of nematode-resistant Rhg1 soybeans

Bayless, A. M., Zapotocny, R. W., Grunwald, D. J., Amundson, K. K., Diers, B. W. & Bent, A. F., May 8 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 19, p. E4512-E4521

Research output: Contribution to journalArticle

Ancestrality and mosaicism of giant viruses supporting the definition of the fourth TRUC of microbes

Colson, P., Levasseur, A., Scola, B. L., Sharma, V., Nasir, A., Pontarotti, P., Caetano-Anollés, G. & Raoult, D., Nov 27 2018, In : Frontiers in Microbiology. 9, NOV, 2668.

Research output: Contribution to journalArticle

A novel picornavirus-like genome from transcriptome sequencing of sugar beet cyst nematode represents a new putative genus

Lin, J., Ye, R., Thekke-Veetil, T., Staton, M. E., Arelli, P. R., Bernard, E. C., Hewezi, T., Domier, L. L. & Hajimorad, M. R., Oct 2018, In : Journal of General Virology. 99, 10, p. 1418-1424 7 p., 001139.

Research output: Contribution to journalArticle

A novel receptor-like kinase involved in fungal pathogen defence in Arabidopsis thaliana

Ray, J., Yang, X., Kong, F., Guo, T., Deng, F., Clough, S. & Ramonell, K., Aug 2018, In : Journal of Phytopathology. 166, 7-8, p. 506-515 10 p.

Research output: Contribution to journalArticle

Archaea-First and the Co-Evolutionary Diversification of Domains of Life

Staley, J. T. & Caetano-Anollés, G., Aug 2018, In : BioEssays. 40, 8, 1800036.

Research output: Contribution to journalReview article

A regionally-adapted implementation of conservation agriculture delivers rapid improvements to soil properties associated with crop yield stability

Williams, A., Jordan, N. R., Smith, R. G., Hunter, M. C., Kammerer, M., Kane, D. A., Koide, R. T. & Davis, A. S., Dec 1 2018, In : Scientific reports. 8, 1, 8467.

Research output: Contribution to journalArticle

Assembly and annotation of a draft genome sequence for Glycine latifolia, a perennial wild relative of soybean

Liu, Q., Chang, S., Hartman, G. L. & Domier, L. L., Jul 2018, In : Plant Journal. 95, 1, p. 71-85 15 p.

Research output: Contribution to journalArticle

Association mapping of flowering and height traits in germplasm enhancement of maize doubled haploid (GEM-DH) lines

Vanous, A., Gardner, C., Blanco, M., Martin-Schwarze, A., Lipka, A. E., Flint-Garcia, S., Bohn, M., Edwards, J. & Lübberstedt, T., Jul 2018, In : Plant Genome. 11, 2, 170083.

Research output: Contribution to journalArticle

BETYdb: a yield, trait, and ecosystem service database applied to second-generation bioenergy feedstock production

LeBauer, D., Kooper, R., Mulrooney, P., Rohde, S., Wang, D., Long, S. P. & Dietze, M. C., Jan 2018, In : GCB Bioenergy. 10, 1, p. 61-71 11 p.

Research output: Contribution to journalArticle

Beyond the nutrient strategies: Common ground to accelerate agricultural water quality improvement in the upper Midwest

Christianson, R., Christianson, L., Wong, C., Helmers, M., McIsaac, G., Mulla, D. & McDonald, M., Jan 15 2018, In : Journal of Environmental Management. 206, p. 1072-1080 9 p.

Research output: Contribution to journalArticle

Biocatalytic removal of perchlorate and nitrate in ion-exchange waste brine

Hutchison, J. M. & Zilles, J. L., Aug 2018, In : Environmental Science: Water Research and Technology. 4, 8, p. 1181-1189 9 p.

Research output: Contribution to journalArticle

Biochemical and transcriptomic analysis of maize diversity to elucidate drivers of leaf carbon isotope composition

Kolbe, A. R., Studer, A. J. & Cousins, A. B., Jan 1 2018, In : Functional Plant Biology. 45, 5, p. 489-500 12 p.

Research output: Contribution to journalArticle

Bioinformatics for prohormone and neuropeptide discovery

Southey, B. R., Romanova, E. V., Rodriguez-Zas, S. L. & Sweedler, J. V., Jan 1 2018, Methods in Molecular Biology. Humana Press Inc., p. 71-96 26 p. (Methods in Molecular Biology; vol. 1719).

Research output: Chapter in Book/Report/Conference proceedingChapter

Biomass production of herbaceous energy crops in the United States: field trial results and yield potential maps from the multiyear regional feedstock partnership

Lee, D. K., Aberle, E., Anderson, E. K., Anderson, W., Baldwin, B. S., Baltensperger, D., Barrett, M., Blumenthal, J., Bonos, S., Bouton, J., Bransby, D. I., Brummer, C., Burks, P. S., Chen, C., Daly, C., Egenolf, J., Farris, R. L., Fike, J. H., Gaussoin, R., Gill, J. R. & 38 others, Gravois, K., Halbleib, M. D., Hale, A., Hanna, W., Harmoney, K., Heaton, E. A., Heiniger, R. W., Hoffman, L., Hong, C. O., Kakani, G., Kallenbach, R., Macoon, B., Medley, J. C., Missaoui, A., Mitchell, R., Moore, K. J., Morrison, J. I., Odvody, G. N., Richwine, J. D., Ogoshi, R., Parrish, J. R., Quinn, L., Richard, E., Rooney, W. L., Rushing, J. B., Schnell, R., Sousek, M., Staggenborg, S. A., Tew, T., Uehara, G., Viands, D. R., Voigt, T., Williams, D., Williams, L., Wilson, L. T., Wycislo, A., Yang, Y. & Owens, V., Oct 2018, In : GCB Bioenergy. 10, 10, p. 698-716 19 p.

Research output: Contribution to journalArticle

Biorefinery for combined production of jet fuel and ethanol from lipid-producing sugarcane: a techno-economic evaluation

Kumar, D., Long, S. P. & Singh, V., Feb 1 2018, In : GCB Bioenergy. 10, 2, p. 92-107 16 p.

Research output: Contribution to journalArticle

Brain region-dependent gene networks associated with selective breeding for increased voluntary wheel-running behavior

Zhang, P., Rhodes, J. S., Garland, T., Perez, S. D., Southey, B. R. & Rodriguez-Zas, S. L., Aug 2018, In : PloS one. 13, 8, e0201773.

Research output: Contribution to journalArticle

Canopy warming accelerates development in soybean and maize, offsetting the delay in soybean reproductive development by elevated CO2 concentrations

Ruiz-Vera, U. M., Siebers, M. H., Jaiswal, D., Ort, D. R. & Bernacchi, C. J., Dec 2018, In : Plant Cell and Environment. 41, 12, p. 2806-2820 15 p.

Research output: Contribution to journalArticle

Carbon and nitrogen content of soil organic matter and microbial biomass under long-term crop rotation and tillage in Illinois, USA

Zuber, S. M., Behnke, G. D., Nafziger, E. D. & Villamil, M. B., Mar 2018, In : Agriculture (Switzerland). 8, 3, 37.

Research output: Contribution to journalArticle

Carbonic anhydrase mutants in zea mays have altered stomatal responses to environmental signals

Kolbe, A. R., Brutnell, T. P., Cousins, A. B. & Studer, A. J., Jun 2018, In : Plant physiology. 177, 3, p. 980-989 10 p.

Research output: Contribution to journalArticle

Cellulosic ethanol potential of feedstocks grown on marginal lands

Kim, S. M., Lee, D. K., Thapa, S., Dien, B. S., Tumbleson, M. E., Rausch, K. D. & Singh, V., Jan 1 2018, In : Transactions of the ASABE. 61, 6, p. 1775-1782 8 p.

Research output: Contribution to journalArticle

Changes in Corn Protein Content During Storage and Their Relationship with Dry Grind Ethanol Production

Ramchandran, D., Hojilla-Evangelista, M. P., Moose, S. P., Rausch, K. D., Tumbleson, M. E. & Singh, V., Aug 2018, In : JAOCS, Journal of the American Oil Chemists' Society. 95, 8, p. 923-932 10 p.

Research output: Contribution to journalArticle

Changes in Phenolic Acid Content in Maize during Food Product Processing

Butts-Wilmsmeyer, C. J., Mumm, R. H., Rausch, K. D., Kandhola, G., Yana, N. A., Happ, M. M., Ostezan, A., Wasmund, M. & Bohn, M. O., Apr 4 2018, In : Journal of Agricultural and Food Chemistry. 66, 13, p. 3378-3385 8 p.

Research output: Contribution to journalArticle

Characteristics of xanthomonas cucurbitae isolates from pumpkins and survival of the bacterium in pumpkin seeds

Zhang, X. & Babadoost, M., Sep 2018, In : Plant disease. 102, 9, p. 1779-1784 6 p.

Research output: Contribution to journalArticle

Chlorophyll can be reduced in crop canopies with little penalty to photosynthesis

Walker, B. J., Drewry, D. T., Slattery, R. A., VanLoocke, A., Cho, Y. B. & Ort, D. R., Feb 2018, In : Plant physiology. 176, 2, p. 1215-1232 18 p.

Research output: Contribution to journalArticle

Chlorotyrosines versus Volatile Byproducts from Chlorine Disinfection during Washing of Spinach and Lettuce

Komaki, Y., Simpson, A. M. A., Choe, J. K., Plewa, M. J. & Mitch, W. A., Aug 21 2018, In : Environmental Science and Technology. 52, 16, p. 9361-9369 9 p.

Research output: Contribution to journalArticle

Chromosome Nomenclature and Cytological Characterization of Sacred Lotus

Meng, Z., Hu, X., Zhang, Z., Li, Z., Lin, Q., Yang, M., Yang, P., Ming, R., Yu, Q. & Wang, K., Mar 1 2018, In : Cytogenetic and Genome Research. 153, 4, p. 223-231 9 p.

Research output: Contribution to journalArticle

Comparative analysis of homologous sequences of saccharum officinarum and saccharum spontaneum reveals independent polyploidization events

Sharma, A., Song, J., Lin, Q., Singh, R., Ramos, N., Wang, K., Zhang, J., Ming, R. & Yu, Q., Sep 25 2018, In : Frontiers in Plant Science. 9, 1414.

Research output: Contribution to journalArticle

Comparison of chemical, color stability, and phenolic composition from pericarp of nine colored corn unique varieties in a beverage model

Haggard, S., Luna-Vital, D., West, L., Juvik, J. A., Chatham, L., Paulsmeyer, M. & Gonzalez de Mejia, E., Mar 2018, In : Food Research International. 105, p. 286-297 12 p.

Research output: Contribution to journalArticle

Comparison of the mitochondrial genome sequences of six Annulohypoxylon stygium isolates suggests short fragment insertions as a potential factor leading to larger genomic size

Deng, Y., Hsiang, T., Li, S., Lin, L., Wang, Q., Chen, Q., Xie, B. & Ming, R., Sep 10 2018, In : Frontiers in Microbiology. 9, SEP, 2079.

Research output: Contribution to journalArticle

Confronting herbicide resistance with cooperative management

Evans, J. A., Williams, A., Hager, A. G., Mirsky, S. B., Tranel, P. J. & Davis, A. S., Nov 2018, In : Pest Management Science. 74, 11, p. 2424-2431 8 p.

Research output: Contribution to journalArticle

Consensus, uncertainties and challenges for perennial bioenergy crops and land use

Whitaker, J., Field, J. L., Bernacchi, C. J., Cerri, C. E. P., Ceulemans, R., Davies, C. A., DeLucia, E. H., Donnison, I. S., McCalmont, J. P., Paustian, K., Rowe, R. L., Smith, P., Thornley, P. & McNamara, N. P., Mar 2018, In : GCB Bioenergy. 10, 3, p. 150-164 15 p.

Research output: Contribution to journalReview article

Context-dependent and variable effects of endohyphal bacteria on interactions between fungi and seeds

Shaffer, J. P., Zalamea, P. C., Sarmiento, C., Gallery, R. E., Dalling, J. W., Davis, A. S., Baltrus, D. A. & Arnold, A. E., Dec 2018, In : Fungal Ecology. 36, p. 117-127 11 p.

Research output: Contribution to journalArticle

Conversion of grazed pastures to energy cane as a biofuel feedstock alters the emission of GHGs from soils in Southeastern United States

Gomez-Casanovas, N., DeLucia, N. J., Hudiburg, T. W., Bernacchi, C. J. & DeLucia, E. H., Jan 2018, In : Biomass and Bioenergy. 108, p. 312-322 11 p.

Research output: Contribution to journalArticle

Copper oxide nanoparticle effects on root growth and hydraulic conductivity of two vegetable crops

Margenot, A. J., Rippner, D. A., Dumlao, M. R., Nezami, S., Green, P. G., Parikh, S. J. & McElrone, A. J., Oct 1 2018, In : Plant and Soil. 431, 1-2, p. 333-345 13 p.

Research output: Contribution to journalArticle

Corylus americana: A valuable genetic resource for developing hazelnuts adapted to the eastern United States

Molnar, T. J., Honig, J. A., Mayberry, A., Revord, R. S., Lovell, S. T., Mehlenbacher, S. A. & Capik, J. M., Jan 1 2018, In : Acta Horticulturae. 1226, p. 115-121 7 p.

Research output: Contribution to journalArticle

Determinants of virulence and in vitro development colocalize on a genetic map of setosphaeria turcica

Mideros, S. X., Chung, C. L., Wiesner-Hanks, T., Poland, J. A., Wu, D., Fialko, A. A., Turgeon, B. G. & Nelson, R. J., Feb 2018, In : Phytopathology. 108, 2, p. 254-263 10 p.

Research output: Contribution to journalArticle

Development and applications of chromosome-specific cytogenetic BAC-FISH probes in S. spontaneum

Dong, G., Shen, J., Zhang, Q., Wang, J., Yu, Q., Ming, R., Wang, K. & Zhang, J., Feb 26 2018, In : Frontiers in Plant Science. 9, 218.

Research output: Contribution to journalArticle