Research Output

2019

Population structure analyses provide insight into the source populations underlying rural isolated communities in illinois

Owings, A. C., Fernandes, S. B., Olatoye, M. O., Fogleman, A. J., Zahnd, W. E., Jenkins, W. D., Malhi, R. S. & Lipka, A. E., Dec 1 2019, In : Human biology. 91, 1, p. 31-47 17 p.

Research output: Contribution to journalArticle

Population structure of Miscanthus sacchariflorus reveals two major polyploidization events, tetraploid-mediated unidirectional introgression from diploid M. Sinensis, and diversity centred around the Yellow Sea

Clark, L. V., Jin, X., Petersen, K. K., Anzoua, K. G., Bagmet, L., Chebukin, P., Deuter, M., Dzyubenko, E., Dzyubenko, N., Heo, K., Johnson, D. A., Jørgensen, U., Kjeldsen, J. B., Nagano, H., Peng, J., Sabitov, A., Yamada, T., Yoo, J. H., Yu, C. Y., Long, S. P. & 1 others, Sacks, E. J., Sep 13 2019, In : Annals of botany. 124, 4, p. 731-748 18 p.

Research output: Contribution to journalArticle

Open Access

Predicting light-induced stomatal movements based on the redox state of plastoquinone: theory and validation

Kromdijk, J., Głowacka, K. & Long, S. P., Jul 1 2019, In : Photosynthesis research. 141, 1, p. 83-97 15 p.

Research output: Contribution to journalArticle

Prediction of N 2 O emissions under different field management practices and climate conditions

Foltz, M. E., Zilles, J. L. & Koloutsou-Vakakis, S., Jan 1 2019, In : Science of the Total Environment. 646, p. 872-879 8 p.

Research output: Contribution to journalArticle

Predominant N-Haloacetamide and Haloacetonitrile Formation in Drinking Water via the Aldehyde Reaction Pathway

Vu, T. N., Kimura, S. Y., Plewa, M. J., Richardson, S. D. & Marinas, B. J., Jan 15 2019, In : Environmental Science and Technology. 53, 2, p. 850-859 10 p.

Research output: Contribution to journalArticle

Prospects for economical natural colorants: insights from maize

Chatham, L. A., Paulsmeyer, M. & Juvik, J. A., Nov 1 2019, In : Theoretical and Applied Genetics. 132, 11, p. 2927-2946 20 p.

Research output: Contribution to journalReview article

Recent polyploidization events in three Saccharum founding species

Zhang, J., Zhang, Q., Li, L., Tang, H., Zhang, Q., Chen, Y., Arrow, J., Zhang, X., Wang, A., Miao, C. & Ming, R., Jan 2019, In : Plant Biotechnology Journal. 17, 1, p. 264-274 11 p.

Research output: Contribution to journalArticle

Recent warming has resulted in smaller gains in net carbon uptake in northern high latitudes

Zhu, P., Zhuang, Q., Welp, L., Ciais, P., Heimann, M., Peng, B., Li, W., Bernacchi, C., Roedenbeck, C. & Keenan, T. F., Sep 1 2019, In : Journal of Climate. 32, 18, p. 5849-5863 15 p.

Research output: Contribution to journalArticle

Recommendations for performance optimizations when using GATK3.8 and GATK4

Heldenbrand, J. R., Baheti, S., Bockol, M. A., Drucker, T. M., Hart, S. N., Hudson, M. E., Iyer, R. K., Kalmbach, M. T., Kendig, K. I., Klee, E. W., Mattson, N. R., Wieben, E. D., Wiepert, M., Wildman, D. E. & Mainzer, L. S., Nov 8 2019, In : BMC bioinformatics. 20, 1, 557.

Research output: Contribution to journalArticle

Open Access

Registration of ‘erisman’ soft red winter wheat

Krill, A. M., Smith, N. J., Handal, E. A. & Kolb, F. L., Jan 2019, In : Journal of Plant Registrations. 13, 1, p. 58-62 5 p.

Research output: Contribution to journalArticle

Relationship between invasive brown marmorated stink bug (halyomorpha halys) and fumonisin contamination of field corn in the Mid-Atlantic U.S

Opoku, J., Kleczewski, N. M., Hamby, K. A., Herbert, D. A., Malone, S. & Mehl, H. L., Jun 2019, In : Plant disease. 103, 6, p. 1189-1195 7 p.

Research output: Contribution to journalArticle

Relationship of phenolic composition of selected purple maize (Zea mays L.) genotypes with their anti-inflammatory, anti-adipogenic and anti-diabetic potential

Zhang, Q., Gonzalez de Mejia, E., Luna-Vital, D., Tao, T., Chandrasekaran, S., Chatham, L., Juvik, J., Singh, V. & Kumar, D., Aug 15 2019, In : Food chemistry. 289, p. 739-750 12 p.

Research output: Contribution to journalArticle

Reply to: Brazilian ethanol expansion subject to limitations

Jaiswal, D., De Souza, A. P., Larsen, S., LeBauer, D. S., Miguez, F. E., Sparovek, G., Bollero, G., Buckeridge, M. S. & Long, S. P., Mar 1 2019, In : Nature Climate Change. 9, 3, p. 211-212 2 p.

Research output: Contribution to journalLetter

Residue and agronomic management to reduce the continuous corn yield penalty

Vogel, A. M. & Below, F. E., Sep 20 2019, In : Agronomy. 9, 10, 567.

Research output: Contribution to journalArticle

Open Access

Saccharum × Miscanthus intergeneric hybrids (miscanes) exhibit greater chilling tolerance of C4 photosynthesis and postchilling recovery than sugarcane (Saccharum spp. hybrids)

Kar, S., Zhang, N., Nakashima, T., Villanueva-Morales, A., Stewart, J. R., Sacks, E. J., Terajima, Y. & Yamada, T., Nov 1 2019, In : GCB Bioenergy. 11, 11, p. 1318-1333 16 p.

Research output: Contribution to journalArticle

Open Access

Safer food through plant science: Reducing toxic element accumulation in crops

Clemens, S. & Ort, D., Oct 24 2019, In : Journal of experimental botany. 70, 20, p. 5537-5557 21 p.

Research output: Contribution to journalReview article

Saturated Buffers: What Is Their Potential Impact across the US Midwest?

Chandrasoma, J. M., Christianson, R. D. & Christianson, L. E., Jan 1 2019, In : Agricultural and Environmental Letters. 4, 1, p. 1-4 4 p.

Research output: Contribution to journalArticle

Open Access

SentIeon DNaSeq variant calling workflow demonstrates strong computational performance and accuracy

Kendig, K. I., Baheti, S., Bockol, M. A., Drucker, T. M., Hart, S. N., Heldenbrand, J. R., Hernaez, M., Hudson, M. E., Kalmbach, M. T., Klee, E. W., Mattson, N. R., Ross, C. A., Taschuk, M., Wieben, E. D., Wiepert, M., Wildman, D. E. & Mainzer, L. S., 2019, In : Frontiers in Genetics. 10, JUL, 736.

Research output: Contribution to journalArticle

Open Access

Sex-specific markers for waterhemp (Amaranthus tuberculatus) and Palmer amaranth (Amaranthus palmeri)

Montgomery, J. S., Sadeque, A., Giacomini, D. A., Brown, P. J. & Tranel, P. J., Jul 1 2019, In : Weed Science. 67, 4, p. 412-418 7 p.

Research output: Contribution to journalArticle

Siberian Miscanthus sacchariflorus accessions surpass the exceptional chilling tolerance of the most widely cultivated clone of Miscanthus x giganteus

Pignon, C. P., Spitz, I., Sacks, E. J., Jørgensen, U., Kørup, K. & Long, S. P., Jul 2019, In : GCB Bioenergy. 11, 7, p. 883-894 12 p.

Research output: Contribution to journalArticle

Open Access

Simulated responses of tile-drained agricultural systems to recent changes in ambient atmospheric gradients

Jeong, H., Pittelkow, C. M. & Bhattarai, R., Jan 2019, In : Agricultural Systems. 168, p. 48-55 8 p.

Research output: Contribution to journalArticle

Site-specific treatment responses in on-farm precision experimentation

Trevisan, R. G., Bullock, D. S. & Martin, N. F., Jan 1 2019, Precision Agriculture 2019 - Papers Presented at the 12th European Conference on Precision Agriculture, ECPA 2019. Stafford, J. V. (ed.). Wageningen Academic Publishers, p. 925-931 7 p. (Precision Agriculture 2019 - Papers Presented at the 12th European Conference on Precision Agriculture, ECPA 2019).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Soils

Margenot, A., Jan 1 2019, In : African Journal of Food, Agriculture, Nutrition and Development. 19, 5, p. 15109-15115 7 p.

Research output: Contribution to journalArticle

Open Access

Soybean [Glycine max (L.) Merr.] breeding: History, improvement, production and future opportunities

Anderson, E. J., Ali, M. L., Beavis, W. D., Chen, P., Clemente, T. E., Diers, B. W., Graef, G. L., Grassini, P., Hyten, D. L., McHale, L. K., Nelson, R. L., Parrott, W. A., Patil, G. B., Stupar, R. M. & Tilmon, K. J., Oct 8 2019, Advances in Plant Breeding Strategies: Legumes. Springer International Publishing, Vol. 7. p. 431-516 86 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Soybean breeding in africa

Diers, B. & Scaboo, A., Jan 1 2019, In : African Journal of Food, Agriculture, Nutrition and Development. 19, 5, p. 15121-15125 5 p.

Research output: Contribution to journalArticle

Open Access

Soybean diseases: Unique situations in Africa

Hartman, G. L. & Murithi, H. M., Jan 1 2019, In : African Journal of Food, Agriculture, Nutrition and Development. 19, 5, p. 15126-15130 5 p.

Research output: Contribution to journalArticle

Open Access

Soybean pests

Murithi, H. M., Wosula, E. N., Lagos-Kutz, D. M. & Hartman, G. L., Jan 1 2019, In : African Journal of Food, Agriculture, Nutrition and Development. 19, 5, p. 15151-15154 4 p.

Research output: Contribution to journalArticle

Open Access

Stability analysis of kernel quality traits in exotic-derived doubled haploid maize lines

Vanous, A., Gardner, C., Blanco, M., Martin-Schwarze, A., Wang, J., Li, X., Lipka, A. E., Flint-Garcia, S., Bohn, M., Edwards, J. & Lubberstedt, T., Mar 2019, In : Plant Genome. 12, 1, 170114.

Research output: Contribution to journalArticle

Open Access

Sugar production from bioenergy sorghum by using pilot scale continuous hydrothermal pretreatment combined with disk refining

Cheng, M. H., Dien, B. S., Lee, D. K. & Singh, V., Oct 2019, In : Bioresource Technology. 289, 121663.

Research output: Contribution to journalArticle

Survey of glyphosate-, atrazine- and lactofen-resistance mechanisms in Ohio waterhemp (Amaranthus tuberculatus) populations

Murphy, B. P., Larran, A. S., Ackley, B., Loux, M. M. & Tranel, P. J., May 1 2019, In : Weed Science. 67, 3, p. 296-302 7 p.

Research output: Contribution to journalArticle

Synthetic glycolate metabolism pathways stimulate crop growth and productivity in the field

South, P. F., Cavanagh, A. P., Liu, H. W. & Ort, D. R., Jan 4 2019, In : Science. 363, 6422, eaat9077.

Research output: Contribution to journalArticle

Target enrichment sequencing of 307 germplasm accessions identified ancestry of ancient and modern hybrids and signatures of adaptation and selection in sugarcane (Saccharum spp.), a ‘sweet’ crop with ‘bitter’ genomes

Yang, X., Song, J., Todd, J., Peng, Z., Paudel, D., Luo, Z., Ma, X., You, Q., Hanson, E., Zhao, Z., Zhao, Y., Zhang, J., Ming, R. & Wang, J., Feb 1 2019, In : Plant Biotechnology Journal. 17, 2, p. 488-498 11 p.

Research output: Contribution to journalArticle

Target-site mutations conferring herbicide resistance

Murphy, B. P. & Tranel, P. J., Oct 2019, In : Plants. 8, 10, 382.

Research output: Contribution to journalArticle

Open Access

Taxonomy of the order Mononegavirales: second update 2018

Maes, P., Amarasinghe, G. K., Ayllón, M. A., Basler, C. F., Bavari, S., Blasdell, K. R., Briese, T., Brown, P. A., Bukreyev, A., Balkema-Buschmann, A., Buchholz, U. J., Chandran, K., Crozier, I., de Swart, R. L., Dietzgen, R. G., Dolnik, O., Domier, L. L., Drexler, J. F., Dürrwald, R., Dundon, W. G. & 57 others, Duprex, W. P., Dye, J. M., Easton, A. J., Fooks, A. R., Formenty, P. B. H., Fouchier, R. A. M., Freitas-Astúa, J., Ghedin, E., Griffiths, A., Hewson, R., Horie, M., Hurwitz, J. L., Hyndman, T. H., Jiāng, D., Kobinger, G. P., Kondō, H., Kurath, G., Kuzmin, I. V., Lamb, R. A., Lee, B., Leroy, E. M., Lǐ, J., Marzano, S. Y. L., Mühlberger, E., Netesov, S. V., Nowotny, N., Palacios, G., Pályi, B., Pawęska, J. T., Payne, S. L., Rima, B. K., Rota, P., Rubbenstroth, D., Simmonds, P., Smither, S. J., Song, Q., Song, T., Spann, K., Stenglein, M. D., Stone, D. M., Takada, A., Tesh, R. B., Tomonaga, K., Tordo, N., Towner, J. S., van den Hoogen, B., Vasilakis, N., Wahl, V., Walker, P. J., Wang, D., Wang, L. F., Whitfield, A. E., Williams, J. V., Yè, G., Zerbini, F. M., Zhang, Y. Z. & Kuhn, J. H., Apr 3 2019, In : Archives of Virology. 164, 4, p. 1233-1244 12 p.

Research output: Contribution to journalArticle

Open Access

Testing Empirical Support for Evolutionary Models that Root the Tree of Life

Caetano-Anollés, D., Nasir, A., Kim, K. M. & Caetano-Anollés, G., Apr 15 2019, In : Journal of Molecular Evolution. 87, 2-3, p. 131-142 12 p.

Research output: Contribution to journalArticle

Open Access

The bracteatus pineapple genome and domestication of clonally propagated crops

Chen, L. Y., VanBuren, R., Paris, M., Zhou, H., Zhang, X., Wai, C. M., Yan, H., Chen, S., Alonge, M., Ramakrishnan, S., Liao, Z., Liu, J., Lin, J., Yue, J., Fatima, M., Lin, Z., Zhang, J., Huang, L., Wang, H., Hwa, T. Y. & 25 others, Kao, S. M., Choi, J. Y., Sharma, A., Song, J., Wang, L., Yim, W. C., Cushman, J. C., Paull, R. E., Matsumoto, T., Qin, Y., Wu, Q., Wang, J., Yu, Q., Wu, J., Zhang, S., Boches, P., Tung, C. W., Wang, M. L., Coppens d’Eeckenbrugge, G., Sanewski, G. M., Purugganan, M. D., Schatz, M. C., Bennetzen, J. L., Lexer, C. & Ming, R., Oct 1 2019, In : Nature Genetics. 51, 10, p. 1549-1558 10 p.

Research output: Contribution to journalArticle

Open Access

The data-intensive farm management project: Changing agronomic research through on-farm precision experimentation

Bullock, D. S., Boerngen, M., Tao, H., Maxwell, B., Luck, J. D., Shiratsuchi, L., Puntel, L. & Martin, N. F., Nov 1 2019, In : Agronomy Journal. 111, 6, p. 2736-2746 11 p.

Research output: Contribution to journalArticle

Open Access

The Draft Genome of Kochia scoparia and the Mechanism of Glyphosate Resistance via Transposon-Mediated EPSPS Tandem Gene Duplication

Patterson, E. L., Saski, C. A., Sloan, D. B., Tranel, P. J., Westra, P., Gaines, T. A. & Gaut, B., Oct 1 2019, In : Genome biology and evolution. 11, 10, p. 2927-2940 14 p.

Research output: Contribution to journalArticle

Open Access

The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication

Zhuang, W., Chen, H., Yang, M., Wang, J., Pandey, M. K., Zhang, C., Chang, W. C., Zhang, L., Zhang, X., Tang, R., Garg, V., Wang, X., Tang, H., Chow, C. N., Wang, J., Deng, Y., Wang, D., Khan, A. W., Yang, Q., Cai, T. & 58 others, Bajaj, P., Wu, K., Guo, B., Zhang, X., Li, J., Liang, F., Hu, J., Liao, B., Liu, S., Chitikineni, A., Yan, H., Zheng, Y., Shan, S., Liu, Q., Xie, D., Wang, Z., Khan, S. A., Ali, N., Zhao, C., Li, X., Luo, Z., Zhang, S., Zhuang, R., Peng, Z., Wang, S., Mamadou, G., Zhuang, Y., Zhao, Z., Yu, W., Xiong, F., Quan, W., Yuan, M., Li, Y., Zou, H., Xia, H., Zha, L., Fan, J., Yu, J., Xie, W., Yuan, J., Chen, K., Zhao, S., Chu, W., Chen, Y., Sun, P., Meng, F., Zhuo, T., Zhao, Y., Li, C., He, G., Zhao, Y., Wang, C., Kavikishor, P. B., Pan, R. L., Paterson, A. H., Wang, X., Ming, R. & Varshney, R. K., May 1 2019, In : Nature Genetics. 51, 5, p. 865-876 12 p.

Research output: Contribution to journalArticle

Open Access

The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes

Masonbrink, R., Maier, T. R., Muppirala, U., Seetharam, A. S., Lord, E., Juvale, P. S., Schmutz, J., Johnson, N. T., Korkin, D., Mitchum, M. G., Mimee, B., Den Akker, S. E. V., Hudson, M., Severin, A. J. & Baum, T. J., Feb 7 2019, In : BMC genomics. 20, 1, 119.

Research output: Contribution to journalArticle

Open Access

The MANAGE Drain Concentration database: A new tool compiling North American drainage nutrient concentrations

Hertzberger, A., Pittelkow, C. M., Harmel, R. D. & Christianson, L. E., May 1 2019, In : Agricultural Water Management. 216, p. 113-117 5 p.

Research output: Contribution to journalArticle

Open Access

The papaya genome project: Fruitful insights, a decade later

Nguyen, J. K. & Ming, R., Jan 1 2019, In : Acta Horticulturae. 1250, p. 111-121 11 p.

Research output: Contribution to journalArticle

The ptr1 locus of solanum lycopersicoides confers resistance to race 1 strains of pseudomonas syringae pv. tomato and to ralstonia pseudosolanacearum by recognizing the type III effectors AvrRpt2 and RipBN

Mazo-Molina, C., Mainiero, S., Hind, S. R., Kraus, C. M., Vachev, M., Maviane-Macia, F., Lindeberg, M., Saha, S., Strickler, S. R., Feder, A., Giovannoni, J. J., Smart, C. D., Peeters, N. & Martin, G. B., 2019, In : Molecular Plant-Microbe Interactions. 32, 8, p. 946-960 15 p.

Research output: Contribution to journalArticle

The RNA-binding protein CsrA controls virulence in Erwinia amylovora by regulating relA, RcsB, and FlhD at the posttranscriptional level

Lee, J. H., Ancona, V., Chatnaparat, T., Yang, H. W. & Zhao, Y., Oct 2019, In : Molecular Plant-Microbe Interactions. 32, 10, p. 1448-1459 12 p.

Research output: Contribution to journalArticle

The Role of Management on Methane Emissions From Subtropical Wetlands Embedded in Agricultural Ecosystems

DeLucia, N. J., Gomez-Casanovas, N., Boughton, E. H. & Bernacchi, C. J., Sep 1 2019, In : Journal of Geophysical Research: Biogeosciences. 124, 9, p. 2694-2708 15 p.

Research output: Contribution to journalArticle

Time series experimental design under one-shot sampling: The importance of condition diversity

Kang, X., Hajek, B., Wu, F. & Hanzawa, Y., Oct 2019, In : PloS one. 14, 10, e0224577.

Research output: Contribution to journalArticle

Open Access

Toward a Regional Phosphorus (Re)cycle in the US Midwest

Margenot, A. J., Kitt, D., Gramig, B. M., Berkshire, T. B., Chatterjee, N., Hertzberger, A. J., Aguiar, S., Furneaux, A., Sharma, N. & Cusick, R. D., Jan 1 2019, In : Journal of Environmental Quality. 48, 5, p. 1397-1413 17 p.

Research output: Contribution to journalArticle

Transcriptome-Enabled Network Inference Revealed the GmCOL1 Feed-Forward Loop and Its Roles in Photoperiodic Flowering of Soybean

Wu, F., Kang, X., Wang, M., Haider, W., Price, W. B., Hajek, B. & Hanzawa, Y., Nov 8 2019, In : Frontiers in Plant Science. 10, 1221.

Research output: Contribution to journalArticle

Open Access
Open Access

Trichothecene-producing fusarium species isolated from soybean roots in Ethiopia and Ghana and their pathogenicity on soybean

Hartman, G. L., McCormick, S. P. & O’donnell, K., Aug 2019, In : Plant disease. 103, 8, p. 2070-2075 6 p.

Research output: Contribution to journalArticle