Research Output

2019

Genetic strategies for improving crop yields

Bailey-Serres, J., Parker, J. E., Ainsworth, E. A., Oldroyd, G. E. D. & Schroeder, J. I., Nov 7 2019, In : Nature. 575, 7781, p. 109-118 10 p.

Research output: Contribution to journalReview article

Open Access

Genome-Wide analysis and prediction of resistance to goss’s wilt in maize

Cooper, J. S., Rice, B. R., Shenstone, E. M., Lipka, A. E. & Jamann, T. M., Jun 2019, In : Plant Genome. 12, 2, 180045.

Research output: Contribution to journalArticle

Open Access

Genome-Wide Analysis of Nitrate Transporter (NRT/NPF) Family in Sugarcane Saccharum spontaneum L.

Wang, J., Li, Y., Zhu, F., Ming, R. & Chen, L. Q., Sep 1 2019, In : Tropical Plant Biology. 12, 3, p. 133-149 17 p.

Research output: Contribution to journalArticle

Genome-wide analysis of the MYB-CC gene family of maize

Bai, J., Sun, F., Wang, M., Su, L., Li, R. & Caetano-Anollés, G., Feb 15 2019, In : Genetica. 147, 1

Research output: Contribution to journalArticle

Genome-wide association and genomic prediction for biomass yield in a genetically diverse Miscanthus sinensis germplasm panel phenotyped at five locations in Asia and North America

Clark, L. V., Dwiyanti, M. S., Anzoua, K. G., Brummer, J. E., Ghimire, B. K., Głowacka, K., Hall, M., Heo, K., Jin, X., Lipka, A. E., Peng, J., Yamada, T., Yoo, J. H., Yu, C. Y., Zhao, H., Long, S. P. & Sacks, E. J., Aug 2019, In : GCB Bioenergy. 11, 8, p. 988-1007 20 p.

Research output: Contribution to journalArticle

Open Access

Genome-wide association studies for yield-related traits in soft red winter wheat grown in Virginia

Ward, B. P., Brown-Guedira, G., Kolb, F. L., Van Sanford, D. A., Tyagi, P., Sneller, C. H. & Griffey, C. A., Feb 2019, In : PloS one. 14, 2, e0208217.

Research output: Contribution to journalArticle

Open Access

Genome wide association study identifies novel single nucleotide polymorphic loci and candidate genes involved in soybean sudden death syndrome resistance

Swaminathan, S., Das, A., Assefa, T., Knight, J. M., Da Silva, A. F., Carvalho, J. P. S., Hartman, G. L., Huang, X., Leandro, L. F., Cianzio, S. R. & Bhattacharyya, M. K., Feb 2019, In : PloS one. 14, 2, e0212071.

Research output: Contribution to journalArticle

Open Access

Genome-Wide Identification and Characterization of the Vacuolar H+-ATPase Subunit H Gene Family in Crop Plants

Kang, C., Sun, F., Caetano-Anollés, G., Yan, L., Li, R. & Bai, J., Oct 16 2019, In : International Journal of Molecular Sciences. 20, 20, 5125.

Research output: Contribution to journalArticle

Open Access

Genomic and Allelic Analyses of Laccase Genes in Sugarcane (Saccharum spontaneum L.)

Zhang, W., Lin, J., Dong, F., Ma, Q., Wu, S., Ma, X., Fatima, M., Jia, H. & Ming, R., Sep 1 2019, In : Tropical Plant Biology. 12, 3, p. 219-229 11 p.

Research output: Contribution to journalArticle

Genomic selection using maize ex-plant variety protection germplasm for the prediction of nitrogen-use traits

Mastrodomenico, A. T., Bohn, M. O., Lipka, A. E. & Below, F. E., Jan 1 2019, In : Crop Science. 59, 1, p. 212-220 9 p.

Research output: Contribution to journalArticle

Germplasm Development of Underutilized Temperate U.S. Tree Crops

Revord, R., Lovell, S. T., Molnar, T., Wolz, K. J. & Mattia, C., Mar 14 2019, In : Sustainability. 11, 6, 20 p., 1546.

Research output: Contribution to journalReview article

Open Access

Healthy Planet, Healthy Youth: A Food Systems Education and Promotion Intervention to Improve Adolescent Diet Quality and Reduce Food Waste

Prescott, M. P., Burg, X., Metcalfe, J. J., Lipka, A. E., Herritt, C. & Cunningham-sabo, L., Aug 11 2019, In : Nutrients. 11, 8, 1869.

Research output: Contribution to journalArticle

Open Access

Herbicide Metabolism: Crop Selectivity, Bioactivation, Weed Resistance, and Regulation

Nandula, V. K., Riechers, D. E., Ferhatoglu, Y., Barrett, M., Duke, S. O., Dayan, F. E., Goldberg-Cavalleri, A., Tétard-Jones, C., Wortley, D. J., Onkokesung, N., Brazier-Hicks, M., Edwards, R., Gaines, T., Iwakami, S., Jugulam, M. & Ma, R., Mar 1 2019, In : Weed Science. 67, 2, p. 149-175 27 p.

Research output: Contribution to journalArticle

High-throughput field phenotyping using hyperspectral reflectance and partial least squares regression (PLSR) reveals genetic modifications to photosynthetic capacity

Meacham-Hensold, K., Montes, C. M., Wu, J., Guan, K., Fu, P., Ainsworth, E. A., Pederson, T., Moore, C. E., Brown, K. L., Raines, C. & Bernacchi, C. J., Sep 15 2019, In : Remote Sensing of Environment. 231, 111176.

Research output: Contribution to journalArticle

Open Access

Homologues of the RNA binding protein RsmA in Pseudomonas syringae pv. tomato DC3000 exhibit distinct binding affinities with non-coding small RNAs and have distinct roles in virulence

Ge, Y., Lee, J. H., Liu, J., Yang, H. W., Tian, Y., Hu, B. & Zhao, Y., Jan 1 2019, In : Molecular Plant Pathology. 20, 9, p. 1217-1236 20 p.

Research output: Contribution to journalArticle

Open Access

Horizontal gene transfer in human-associated microorganisms inferred by phylogenetic reconstruction and reconciliation

Jeong, H., Arif, B., Caetano-Anollés, G., Kim, K. M. & Nasir, A., Dec 1 2019, In : Scientific reports. 9, 1, 5953.

Research output: Contribution to journalArticle

Open Access

Host-derived gene silencing of parasite fitness genes improves resistance to soybean cyst nematodes in stable transgenic soybean

Tian, B., Li, J., Vodkin, L. O., Todd, T. C., Finer, J. J. & Trick, H. N., Sep 1 2019, In : Theoretical and Applied Genetics. 132, 9, p. 2651-2662 12 p.

Research output: Contribution to journalArticle

Open Access

Human metallo-β-lactamase enzymes degrade penicillin

Diene, S. M., Pinault, L., Keshri, V., Armstrong, N., Khelaifia, S., Chabrière, E., Caetano-Anolles, G., Colson, P., La Scola, B., Rolain, J. M., Pontarotti, P. & Raoult, D., Dec 1 2019, In : Scientific reports. 9, 1, 12173.

Research output: Contribution to journalArticle

Open Access
Open Access
Open Access

Identification and characterization of a novel stay-green QTL that increases yield in maize

Zhang, J., Fengler, K. A., Van Hemert, J. L., Gupta, R., Mongar, N., Sun, J., Allen, W. B., Wang, Y., Weers, B., Mo, H., Lafitte, R., Hou, Z., Bryant, A., Ibraheem, F., Arp, J., Swaminathan, K., Moose, S. P., Li, B. & Shen, B., Dec 1 2019, In : Plant Biotechnology Journal. 17, 12, p. 2272-2285 14 p.

Research output: Contribution to journalArticle

Open Access

Identification and Expression Analysis of TCP Genes in Saccharum spontaneum L

Lin, J., Zhu, M., Cai, M., Zhang, W., Fatima, M., Jia, H., Li, F. & Ming, R., Sep 1 2019, In : Tropical Plant Biology. 12, 3, p. 206-218 13 p.

Research output: Contribution to journalArticle

Impact of chlorine exposure time on disinfection byproduct formation in the presence of iopamidol and natural organic matter during chloramination

Ackerson, N. O. B., Killinger, A. H., Liberatore, H. K., Ternes, T. A., Plewa, M. J., Richardson, S. D. & Duirk, S. E., Apr 2019, In : Journal of environmental sciences (China). 78, p. 204-214 11 p.

Research output: Contribution to journalArticle

Impact of Planting Date on Melanaphis sacchari (Hemiptera: Aphididae) Population Dynamics and Grain Sorghum Yield

Seiter, N. J., Miskelley, A. D., Lorenz, G. M., Joshi, N. K., Studebaker, G. E. & Kelley, J. P., Dec 9 2019, In : Journal of economic entomology. 112, 6, p. 2731-2736 6 p.

Research output: Contribution to journalArticle

Impact of warm-season grass management on feedstock production on marginal farmland in Central Illinois

Zumpf, C., Lee, M. S., Thapa, S., Guo, J., Mitchell, R., Volenec, J. J. & Lee, D. K., Oct 1 2019, In : GCB Bioenergy. 11, 10, p. 1202-1214 13 p.

Research output: Contribution to journalArticle

Open Access

Implementation of the effect of urease inhibitor on ammonia emissions following urea-based fertilizer application at a Zea mays field in central Illinois: A study with SURFATM-NH 3 model

Lichiheb, N., Myles, L. T., Personne, E., Heuer, M., Buban, M., Nelson, A. J., Koloutsou-Vakakis, S., Rood, M. J., Joo, E., Miller, J. & Bernacchi, C., May 15 2019, In : Agricultural and Forest Meteorology. 269-270, p. 78-87 10 p.

Research output: Contribution to journalArticle

Improving infrared spectroscopy characterization of soil organic matter with spectral subtractions

Margenot, A. J., Parikh, S. J. & Calderón, F. J., Jan 2019, In : Journal of Visualized Experiments. 2019, 143, e57464.

Research output: Contribution to journalArticle

Improving yield mapping accuracy using remote sensing

Gonçalves Trevisan, R., Shiratsuchi, L. S., Bullock, D. S. & Martin, N. F., Jan 1 2019, Precision Agriculture 2019 - Papers Presented at the 12th European Conference on Precision Agriculture, ECPA 2019. Stafford, J. V. (ed.). Wageningen Academic Publishers, p. 901-908 8 p. (Precision Agriculture 2019 - Papers Presented at the 12th European Conference on Precision Agriculture, ECPA 2019).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Increased Duration of Drying–Rewetting Cycles Increases Nitrate Removal in Woodchip Bioreactors

Maxwell, B. M., Birgand, F., Schipper, L. A., Christianson, L. E., Tian, S., Helmers, M. J., Williams, D. J., Chescheir, G. M. & Youssef, M. A., 2019, In : Agricultural and Environmental Letters. 4, 1, p. 1-4 4 p.

Research output: Contribution to journalArticle

Open Access

Increased temperatures may safeguard the nutritional quality of crops under future elevated CO2 concentrations

Köhler, I. H., Huber, S. C., Bernacchi, C. J. & Baxter, I. R., Mar 2019, In : Plant Journal. 97, 5, p. 872-886 15 p.

Research output: Contribution to journalArticle

Insights from transcriptome profiling on the non-photosynthetic and stomatal signaling response of maize carbonic anhydrase mutants to low CO2

Kolbe, A. R., Studer, A. J., Cornejo, O. E. & Cousins, A. B., Feb 15 2019, In : BMC genomics. 20, 1, 138.

Research output: Contribution to journalArticle

Integrated effects of genetic resistance and prothioconazole + tebuconazole application timing on fusarium head blight in wheat

Paul, P. A., Salgado, J. D., Bergstrom, G., Bradley, C. A., Byamukama, E., Byrne, A. M., Chapara, V., Cummings, J. A., Chilvers, M. I., Dill-Macky, R., Friskop, A., Kleczewski, N., Madden, L. V., Nagelkirk, M., Stevens, J., Smith, M., Wegulo, S. N., Wise, K. & Yabwalo, D., Feb 1 2019, In : Plant disease. 103, 2, p. 223-237 15 p.

Research output: Contribution to journalArticle

Interspecific variation in crop and weed responses to arbuscular mycorrhizal fungal community highlights opportunities for weed biocontrol

Li, M., Jordan, N. R., Koide, R. T., Yannarell, A. C. & Davis, A. S., Oct 2019, In : Applied Soil Ecology. 142, p. 34-42 9 p.

Research output: Contribution to journalArticle

In vivo evidence for a regulatory role of phosphorylation of Arabidopsis Rubisco activase at the Thr78 site

Kim, S. Y., Harvey, C. M., Giese, J., Lassowskat, I., Singh, V., Cavanagh, A. P., Spalding, M. H., Finkemeier, I., Ort, D. R. & Huber, S. C., Sep 10 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 37, p. 18723-18731 9 p.

Research output: Contribution to journalArticle

Open Access

Jersey steer ruminal papillae histology and nutrigenomics with diet changes

Novak, T. E., Rodriguez-Zas, S. L., Southey, B. R., Starkey, J. D., Stockler, R. M., Alfaro, G. F. & Moisá, S. J., Nov 1 2019, In : Journal of Animal Physiology and Animal Nutrition. 103, 6, p. 1694-1707 14 p.

Research output: Contribution to journalArticle

Open Access

Karyotype variations among date palm (Phoenix dactylifera L.) cultivars of Sindh, Pakistan

Jatt, T., Markhand, G. S., Rayburn, L., Ming, R., Jatoi, M. A. & Mirbahar, A. A., Jan 1 2019, In : Sarhad Journal of Agriculture. 35, 3, p. 708-718 11 p.

Research output: Contribution to journalArticle

Open Access

Knowledge, attitudes, and perceived barriers towards genetic testing across three rural Illinois communities

Fogleman, A. J., Zahnd, W. E., Lipka, A. E., Malhi, R. S., Ganai, S., Delfino, K. R. & Jenkins, W. D., Jul 4 2019, In : Journal of Community Genetics. 10, 3, p. 417-423 7 p.

Research output: Contribution to journalArticle

Landscape and local site variables differentially influence pollinators and pollination services in urban agricultural sites

Bennett, A. B. & Lovell, S., Feb 2019, In : PloS one. 14, 2, e0212034.

Research output: Contribution to journalArticle

Open Access

Leaf stable carbon isotope composition reflects transpiration efficiency in Zea mays

Twohey, R. J., Roberts, L. M. & Studer, A. J., Feb 1 2019, In : Plant Journal. 97, 3, p. 475-484 10 p.

Research output: Contribution to journalArticle

Length of poly(A) tail affects transcript infectivity of three ZYMV symptom variants differing at only five amino acid positions

Kim, B., Cho, I. S., Kim, I. H., Choi, G. W., Ju, H. K., Hu, W. X., Oh, J. P., Kim, J. K., Seo, E., Domier, L. L., Hammond, J. & Lim, H. S., Nov 1 2019, In : Journal of Plant Pathology. 101, 4, p. 1187-1193 7 p.

Research output: Contribution to journalArticle

Long-term efficacy of annual bluegrass control strategies on golf course putting greens

Patton, A. J., Braun, R. C., Schortgen, G. P., Weisenberger, D. V., Branham, B. E., Sharp, B., Sousek, M. D., Gaussoin, R. E. & Reicher, Z. J., Sep 1 2019, In : Crop, Forage and Turfgrass Management. 5, 1, 180068.

Research output: Contribution to journalArticle

Long-term N fertilization decreased diversity and altered the composition of soil bacterial and archaeal communities

Sun, R., Zhang, P., Riggins, C. W., Zabaloy, M. C., Rodríguez-Zas, S. & Villamil, M. B., Sep 23 2019, In : Agronomy. 9, 10, 574.

Research output: Contribution to journalArticle

Open Access

Long-term N fertilization imbalances potential N acquisition and transformations by soil microbes

Huang, L., Riggins, C. W., Rodríguez-Zas, S., Zabaloy, M. C. & Villamil, M. B., Nov 15 2019, In : Science of the Total Environment. 691, p. 562-571 10 p.

Research output: Contribution to journalArticle

Open Access

Mai1 protein acts between host recognition of pathogen effectors and mitogen-activated protein kinase signaling

Roberts, R., Hind, S. R., Pedley, K. F., Diner, B. A., Szarzanowicz, M. J., Luciano-Rosario, D., Majhi, B. B., Popov, G., Sessa, G., Oh, C. S. & Martin, G. B., Jan 1 2019, In : Molecular Plant-Microbe Interactions. 32, 11, p. 1498-1507 10 p.

Research output: Contribution to journalArticle

Maizegdb 2018: The maize multi-genome genetics and genomics database

Portwood, J. L., Woodhouse, M. R., Cannon, E. K., Gardiner, J. M., Harper, L. C., Schaeffer, M. L., Walsh, J. R., Sen, T. Z., Cho, K. T., Schott, D. A., Braun, B. L., Dietze, M., Dunfee, B., Elsik, C. G., Manchanda, N., Coe, E., Sachs, M., Stinard, P., Tolbert, J., Zimmerman, S. & 1 others, Andorf, C. M., Jan 8 2019, In : Nucleic acids research. 47, D1, p. D1146-D1154

Research output: Contribution to journalArticle

MANET 3.0: Hierarchy and modularity in evolving metabolic networks

Mughal, F. & Caetano-Anollés, G., Oct 24 2019, In : PloS one. 14, 10, e0224201.

Research output: Contribution to journalArticle

Open Access