Research Output 1975 2020

2020

Denitrifying bioreactor inflow manifold design for treatment of aquacultural wastewater

Lepine, C., Christianson, L., McIsaac, G. & Summerfelt, S., Feb 2020, In : Aquacultural Engineering. 88, 102036.

Research output: Contribution to journalArticle

Open Access
bioreactors
bioreactor
wastewater
inflow
total suspended solids

Detecting In-Season Crop Nitrogen Stress of Corn for Field Trials Using UAV- and CubeSat-Based Multispectral Sensing

Cai, Y., Guan, K., Nafziger, E., Chowdhary, G., Peng, B., Jin, Z., Wang, S. & Wang, S., Jan 6 2020, (Accepted/In press) In : IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing. p. 1-14

Research output: Contribution to journalArticle

Open Access
Crops
aircraft
maize
Aircraft
Nitrogen

Genome-wide expression of low temperature response genes in Rosa hybrida L.

dos Reis, M. V., Rouhana, L. V., Sadeque, A., Koga, L., Clough, S. J., Calla, B., Paiva, P. D. D. O. & Korban, S. S., Jan 2020, In : Plant Physiology and Biochemistry. 146, p. 238-248 11 p.

Research output: Contribution to journalArticle

Rosa
Genome
Temperature
genome
Genes

Integrated assessment of crop production and resource use efficiency indicators for the U.S. Corn Belt

Riccetto, S., Davis, A. S., Guan, K. & Pittelkow, C. M., Mar 2020, In : Global Food Security. 24, 100339.

Research output: Contribution to journalArticle

Open Access
Corn Belt region
resource use
crop production
Zea mays
Crops

Lithological and bioclimatic impacts on soil phosphatase activities in California temperate forests

Gu, C., Wilson, S. G. & Margenot, A. J., Feb 2020, In : Soil Biology and Biochemistry. 141, 107633.

Research output: Contribution to journalArticle

temperate forests
temperate forest
Phosphoric Monoester Hydrolases
phosphatase
lithology

Photosynthesis in the fleeting shadows: An overlooked opportunity for increasing crop productivity?

Wang, Y., Burgess, S. J., De Becker, E. & Long, S. P., Jan 6 2020, (Accepted/In press) In : The Plant Journal.

Research output: Contribution to journalArticle

Photosynthesis
Carbon
photosynthesis
Ribulose-Bisphosphate Carboxylase
ribulose-bisphosphate carboxylase

Photosynthetic efficiency and mesophyll conductance are unaffected in Arabidopsis thaliana aquaporin knock-out lines

Kromdijk, J., Głowacka, K. & Long, S. P., Jan 1 2020, In : Journal of experimental botany. 71, 1, p. 318-329 12 p.

Research output: Contribution to journalArticle

Open Access
Aquaporins
aquaporins
Chloroplasts
Arabidopsis
mesophyll

Rapid and distinct responses of particulate and mineral-associated organic nitrogen to conservation tillage and cover crops

Jilling, A., Kane, D., Williams, A., Yannarell, A. C., Davis, A., Jordan, N. R., Koide, R. T., Mortensen, D. A., Smith, R. G., Snapp, S. S., Spokas, K. A. & Stuart Grandy, A., Feb 1 2020, In : Geoderma. 359, 114001.

Research output: Contribution to journalArticle

conservation tillage
cover crop
organic nitrogen
particulate organic matter
cover crops

The influence of rising tropospheric carbon dioxide and ozone on plant productivity

Ainsworth, E. A., Lemonnier, P. & Wedow, J. M., Jan 1 2020, In : Plant Biology. 22, S1, p. 5-11 7 p.

Research output: Contribution to journalReview article

Open Access
ozone
carbon dioxide
productivity
terrestrial ecosystem
pollutants

Variation in avenanthramide content in spring oat over multiple environments

Michels, D. K., Chatham, L. A., Butts-Wilmsmeyer, C. J., Juvik, J. A. & Kolb, F. L., Jan 2020, In : Journal of Cereal Science. 91, 102886.

Research output: Contribution to journalArticle

Open Access
oats
heritability
Breeding
Genotype
avenanthramides
2019

A Comparative Analysis of Anthropogenic CO2 Emissions at City Level Using OCO-2 Observations: A Global Perspective

Fu, P., Xie, Y., Moore, C. E., Myint, S. W. & Bernacchi, C. J., Sep 1 2019, In : Earth's Future. 7, 9, p. 1058-1070 13 p.

Research output: Contribution to journalArticle

Open Access
global perspective
fossil fuel
seasonality
vegetation
carbon
glucokinase
Glucokinase
Anthocyanins
Medical problems
phenolic acids

Agronomic, economic, and environmental performance of nitrogen rates and source in Bangladesh's coastal rice agroecosystems

Shah-Al-Emran, Krupnik, T. J., Kumar, V., Ali, M. Y. & Pittelkow, C. M., Sep 1 2019, In : Field Crops Research. 241, 107567.

Research output: Contribution to journalArticle

Open Access
economic performance
agricultural ecosystem
Bangladesh
agroecosystems
agronomic traits

Aligning Product Chemistry and Soil Context for Agronomic Reuse of Human-Derived Resources

Trimmer, J. T., Margenot, A. J., Cusick, R. & Guest, J. S., Jun 4 2019, In : Environmental Science and Technology. 53, 11, p. 6501-6510 10 p.

Research output: Contribution to journalArticle

Soils
Sanitation
Nutrients
struvite
sanitation

Amino acid differences in the N-terminal half of the polyprotein of Chinese turnip mosaic virus isolates affect symptom expression in Nicotiana benthamiana and radish

Hu, W. X., Seo, E. Y., Cho, I. S., Kim, J. K., Ju, H. K., Kim, I. H., Choi, G. W., Kim, B., Ahn, C. H., Domier, L. L., Oh, S. K., Hammond, J. & Lim, H. S., Jun 1 2019, In : Archives of Virology. 164, 6, p. 1683-1689 7 p.

Research output: Contribution to journalArticle

Raphanus
Mosaic Viruses
Polyproteins
Brassica napus
Tobacco

Ammonia flux measurements above a corn canopy using relaxed eddy accumulation and a flux gradient system

Nelson, A. J., Lichiheb, N., Koloutsou-Vakakis, S., Rood, M. J., Heuer, M., Myles, L. T., Joo, E., Miller, J. & Bernacchi, C., Jan 15 2019, In : Agricultural and Forest Meteorology. 264, p. 104-113 10 p.

Research output: Contribution to journalArticle

flux measurement
eddy
ammonia
maize
canopy

Analysis of genetic diversity of lychee (Litchi chinensis Sonn.) and wild forest relatives in the Sapindaceae from Vietnam using microsatellites

Tran, H., Kanzaki, S., Triest, L., Hormaza, I., Kuk, N. J., Ming, R., Bousquet, J., Khasa, D. & Van Damme, P., Dec 1 2019, In : Genetic Resources and Crop Evolution. 66, 8, p. 1653-1669 17 p.

Research output: Contribution to journalArticle

Sapindaceae
Litchi
Litchi chinensis
Vietnam
Microsatellite Repeats

Analysis of the manage drain concentration database to evaluate agricultural management effects on drainage water nutrient concentrations

Hertzberger, A., Pittelkow, C. M., Harmel, R. D. & Christianson, L. E., Jan 1 2019, In : Transactions of the ASABE. 62, 4, p. 929-939 11 p.

Research output: Contribution to journalArticle

agricultural management
drainage water
Phosphorus
Nutrients
Drainage

An assessment of true and false positive detection rates of stepwise epistatic model selection as a function of sample size and number of markers

Chen, A. H., Ge, W., Metcalf, W., Jakobsson, E., Mainzer, L. S. & Lipka, A. E., May 1 2019, In : Heredity. 122, 5, p. 660-671 12 p.

Research output: Contribution to journalArticle

Sample Size
Gene Frequency
Zea mays
Nucleotides
Genome

A natural colorant system from corn: Flavone-anthocyanin copigmentation for altered hues and improved shelf life

Chatham, L. A., Howard, J. E. & Juvik, J. A., Jan 1 2019, (Accepted/In press) In : Food chemistry. 310, 125734.

Research output: Contribution to journalArticle

flavone
Anthocyanins
flavones
Zea mays
anthocyanins

Antagonism of Trichoderma-based biofungicides against Brazilian and North American isolates of Sclerotinia sclerotiorum and growth promotion of soybean

Macena, A. M. F., Kobori, N. N., Mascarin, G. M., Vida, J. B. & Hartman, G. L., Jan 1 2019, (Accepted/In press) In : BioControl.

Research output: Contribution to journalArticle

biopesticides
Sclerotinia sclerotiorum
growth promotion
Trichoderma
thiophanate-methyl

A physical model-based method for retrieving urban land surface temperatures under cloudy conditions

Fu, P., Xie, Y., Weng, Q., Myint, S., Meacham-Hensold, K. & Bernacchi, C., Sep 1 2019, In : Remote Sensing of Environment. 230, 111191.

Research output: Contribution to journalArticle

physical models
surface temperature
land surface
Mean square error
Temperature
meta-analysis
Productivity
productivity
compost
Soils

Are we approaching a water ceiling to maize yields in the United States?

Delucia, E. H., Chen, S., Guan, K., Peng, B., Li, Y., Gomez-Casanovas, N., Kantola, I. B., Bernacchi, C., Huang, Y., Long, S. P. & Ort, D. R., Jun 18 2019, In : Ecosphere. 10, 6, e02773.

Research output: Contribution to journalArticle

Open Access
maize
corn
vapor pressure
water
water use efficiency

A single nucleotide change in the overlapping MP and CP reading frames results in differences in symptoms caused by two isolates of Youcai mosaic virus

Ju, H. K., Kim, I. H., Hu, W. X., Kim, B., Choi, G. W., Kim, J., Lim, Y. P., Domier, L. L., Hammond, J. & Lim, H. S., Jan 1 2019, In : Archives of Virology.

Research output: Contribution to journalArticle

Mosaic Viruses
Reading Frames
Capsid Proteins
Nucleotides
Proteins

Assembly of allele-aware, chromosomal-scale autopolyploid genomes based on Hi-C data

Zhang, X., Zhang, S., Zhao, Q., Ming, R. & Tang, H., Aug 1 2019, In : Nature Plants. 5, 8, p. 833-845 13 p.

Research output: Contribution to journalArticle

autopolyploidy
alleles
genome
chromosomes
diploidy

Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world's leading biomass crop

Souza, G. M., Van Sluys, M. A., Lembke, C. G., Lee, H., Margarido, G. R. A., Hotta, C. T., Gaiarsa, J. W., Diniz, A. L., Oliveira, M. D. M., Ferreira, S. D. S., Nishiyama, M. Y., Ten-Caten, F., Ragagnin, G. T., Andrade, P. D. M., de Souza, R. F., Nicastro, G. G., Pandya, R., Kim, C., Guo, H., Durham, A. M. & 9 others, Carneiro, M. S., Zhang, J., Zhang, X., Zhang, Q., Ming, R., Schatz, M. C., Davidson, B., Paterson, A. H. & Heckerman, D., Dec 1 2019, In : GigaScience. 8, 12

Research output: Contribution to journalArticle

Open Access
Saccharum
Polyploidy
Biomass
Crops
Genes

Assessing safe food handling knowledge and practices of food service managers in Doha, Qatar

Asim, H. S., Elnemr, I., Goktepe, I., Feng, H., Park, H. K., Alzeyara, S., AlHajri, M. & Kushad, M. M., Jul 1 2019, In : Food Science and Technology International. 25, 5, p. 440-448 9 p.

Research output: Contribution to journalArticle

Qatar
Food Services
food handling
Food Handling
food service

Assessing variation in maize grain nitrogen concentration and its implications for estimating nitrogen balance in the US North Central region

Tenorio, F. A. M., Eagle, A. J., McLellan, E. L., Cassman, K. G., Howard, R., Below, F. E., Clay, D. E., Coulter, J. A., Geyer, A. B., Joos, D. K., Lauer, J. G., Licht, M. A., Lindsey, A. J., Maharjan, B., Pittelkow, C. M., Thomison, P. R., Wortmann, C. S., Sadras, V. O. & Grassini, P., Jul 1 2019, In : Field Crops Research. 240, p. 185-193 9 p.

Research output: Contribution to journalArticle

nitrogen balance
maize
corn
nitrogen
removal

Assessing variation in us soybean seed composition (protein and oil)

Assefa, Y., Purcell, L. C., Salmeron, M., Naeve, S., Casteel, S. N., Kovács, P., Archontoulis, S., Licht, M., Below, F., Kandel, H., Lindsey, L. E., Gaska, J., Conley, S., Shapiro, C., Orlowski, J. M., Golden, B. R., Kaur, G., Singh, M., Thelen, K., Laurenz, R. & 2 others, Davidson, D. & Ciampitti, I. A., Mar 11 2019, In : Frontiers in Plant Science. 10, 298.

Research output: Contribution to journalArticle

Open Access
protein composition
soybeans
oils
seeds
seed yield

A turnip mosaic virus determinant of systemic necrosis in nicotiana benthamiana and a novel resistance-breaking determinant in Chinese cabbage identified from chimeric infectious clones

Kim, I. H., Ju, H. K., Gong, J., Han, J. Y., Seo, E. Y., Cho, S. W., Hu, W. X., Choi, S. R., Lim, Y. P., Domier, L. L., Hammond, J. & Lim, H. S., Jan 1 2019, In : Phytopathology. 109, 9, p. 1638-1647 10 p.

Research output: Contribution to journalArticle

Turnip mosaic virus
Chinese cabbage
Nicotiana benthamiana
chimerism
necrosis

Author Correction: Increasing CO2 threatens human nutrition (Nature, (2014), 510, 7503, (139-142), 10.1038/nature13179)

Myers, S. S., Zanobetti, A., Kloog, I., Huybers, P., Leakey, A. D. B., Bloom, A. J., Carlisle, E., Dietterich, L. H., Fitzgerald, G., Hasegawa, T., Holbrook, N. M., Nelson, R. L., Ottman, M. J., Raboy, V., Sakai, H., Sartor, K. A., Schwartz, J., Seneweera, S., Tausz, M. & Usui, Y., Oct 17 2019, In : Nature. 574, 7778, p. E14

Research output: Contribution to journalComment/debate

Carbon Dioxide
Manuscripts
Triticum
Emotions
Air

Auxin regulation involved in gynoecium morphogenesis of papaya flowers

Zhou, P., Fatima, M., Ma, X., Liu, J. & Ming, R., Dec 1 2019, In : Horticulture Research. 6, 1, 119.

Research output: Contribution to journalArticle

Open Access
Carica
gynoecium
Indoleacetic Acids
papayas
Morphogenesis

Biomass yield in a genetically diverse Miscanthus sinensis germplasm panel evaluated at five locations revealed individuals with exceptional potential

Clark, L. V., Dwiyanti, M. S., Anzoua, K. G., Brummer, J. E., Ghimire, B. K., Głowacka, K., Hall, M., Heo, K., Jin, X., Lipka, A. E., Peng, J., Yamada, T., Yoo, J. H., Yu, C. Y., Zhao, H., Long, S. P. & Sacks, E. J., Oct 1 2019, In : GCB Bioenergy. 11, 10, p. 1125-1145 21 p.

Research output: Contribution to journalArticle

Open Access
Miscanthus giganteus
Miscanthus sinensis
germplasm
Biomass
biomass

Boron and zinc deficiencies and toxicities and their interactions with other nutrients in soybean roots, leaves, and seeds

Pawlowski, M. L., Helfenstein, J., Frossard, E. & Hartman, G. L., Apr 3 2019, In : Journal of Plant Nutrition. 42, 6, p. 634-649 16 p.

Research output: Contribution to journalArticle

Boron
Cotyledon
boron
Soybeans
Zinc

Breeding progress and preparedness for mass-scale deployment of perennial lignocellulosic biomass crops switchgrass, miscanthus, willow and poplar

Clifton-Brown, J., Harfouche, A., Casler, M. D., Dylan Jones, H., Macalpine, W. J., Murphy-Bokern, D., Smart, L. B., Adler, A., Ashman, C., Awty-Carroll, D., Bastien, C., Bopper, S., Botnari, V., Brancourt-Hulmel, M., Chen, Z., Clark, L. V., Cosentino, S., Dalton, S., Davey, C., Dolstra, O. & 39 others, Donnison, I., Flavell, R., Greef, J., Hanley, S., Hastings, A., Hertzberg, M., Hsu, T. W., Huang, L. S., Iurato, A., Jensen, E., Jin, X., Jørgensen, U., Kiesel, A., Kim, D. S., Liu, J., McCalmont, J. P., McMahon, B. G., Mos, M., Robson, P., Sacks, E. J., Sandu, A., Scalici, G., Schwarz, K., Scordia, D., Shafiei, R., Shield, I., Slavov, G., Stanton, B. J., Swaminathan, K., Taylor, G., Torres, A. F., Trindade, L. M., Tschaplinski, T., Tuskan, G. A., Yamada, T., Yeon Yu, C., Zalesny, R. S., Zong, J. & Lewandowski, I., Jan 2019, In : GCB Bioenergy. 11, 1, p. 118-151 34 p.

Research output: Contribution to journalArticle

Miscanthus
Panicum virgatum
energy crops
Crops
Biomass

BSD2 is a Rubisco-specific assembly chaperone, forms intermediary hetero-oligomeric complexes, and is nonlimiting to growth in tobacco

Conlan, B., Birch, R., Kelso, C., Holland, S., De Souza, A. P., Long, S. P., Beck, J. L. & Whitney, S. M., Apr 2019, In : Plant Cell and Environment. 42, 4, p. 1287-1301 15 p.

Research output: Contribution to journalArticle

Ribulose-Bisphosphate Carboxylase
ribulose-bisphosphate carboxylase
Tobacco
tobacco
Growth
conservation programs
landowners
agroforestry
Federal Government
Retirement

Bundle sheath chloroplast volume can house sufficient Rubisco to avoid limiting C4 photosynthesis during chilling

Pignon, C. P., Lundgren, M. R., Osborne, C. P. & Long, S. P., Jan 1 2019, In : Journal of experimental botany. 70, 1, p. 357-365 9 p.

Research output: Contribution to journalArticle

Ribulose-Bisphosphate Carboxylase
C4 photosynthesis
Photosynthesis
ribulose-bisphosphate carboxylase
Chloroplasts

Carbon assimilation in crops at high temperatures

Slattery, R. A. & Ort, D. R., Oct 1 2019, In : Plant Cell and Environment. 42, 10, p. 2750-2758 9 p.

Research output: Contribution to journalReview article

Open Access
Carbon
Temperature
Photosynthesis
crops
temperature

Carfentrazone-ethyl resistance in an Amaranthus tuberculatus population is not mediated by amino acid alterations in the PPO2 protein

Obenland, O. A., Ma, R., O’Brien, S. R., Lygin, A. V. & Riechers, D. E., Apr 2019, In : PloS one. 14, 4, e0215431.

Research output: Contribution to journalArticle

Open Access
carfentrazone
Amaranthus tuberculatus
Amaranthus
Protoporphyrinogen Oxidase
protoporphyrinogen oxidase
Amaranthus tuberculatus
protoporphyrinogen oxidase
herbicides
acetolactate synthase
2,4-D

Characterization of multiple herbicide-resistant waterhemp (Amaranthus tuberculatus) populations from Illinois to VLCFA-inhibiting herbicides

Strom, S. A., Gonzini, L. C., Mitsdarfer, C., Davis, A., Riechers, D. E. & Hager, A. G., Jul 1 2019, In : Weed Science. 67, 4, p. 369-379 11 p.

Research output: Contribution to journalArticle

Amaranthus tuberculatus
acetochlor
very long chain fatty acids
metolachlor
pyroxasulfone

Characterization of soybean STAY-GREEN genes in susceptibility to foliar chlorosis of sudden death syndrome

Chang, H. X., Tan, R., Hartman, G. L., Wen, Z., Sang, H., Domier, L. L., Whitham, S. A., Wang, D. & Chilvers, M. I., Jun 2019, In : Plant physiology. 180, 2, p. 711-717 7 p.

Research output: Contribution to journalArticle

Open Access
Hypochromic Anemia
chlorosis
Sudden Death
Soybeans
soybeans

Coevolution of resistance to PPO inhibitors in waterhemp (Amaranthus tuberculatus) and Palmer amaranth (Amaranthus palmeri)

Lillie, K. J., Giacomini, D. A., Green, J. D. & Tranel, P. J., Sep 1 2019, In : Weed Science. 67, 5, p. 521-526 6 p.

Research output: Contribution to journalArticle

Amaranthus tuberculatus
Amaranthus palmeri
protoporphyrinogen oxidase
coevolution
glycine (amino acid)

Comparative Analysis of SUS Gene Family between Saccharum officinarum and Saccharum spontaneum

Shi, Y., Xu, H., Shen, Q., Lin, J., Wang, Y., Hua, X., Yao, W., Yu, Q., Ming, R. R. & Zhang, J., Sep 1 2019, In : Tropical Plant Biology. 12, 3, p. 174-185 12 p.

Research output: Contribution to journalArticle

Saccharum spontaneum
Saccharum
Saccharum officinarum
sucrose synthase
Genes

Comparative genomics revealed the gene evolution and functional divergence of magnesium transporter families in Saccharum

Wang, Y., Hua, X., Xu, J., Chen, Z., Fan, T., Zeng, Z., Wang, H., Hour, A. L., Yu, Q., Ming, R. R. & Zhang, J., Jan 24 2019, In : BMC genomics. 20, 1, 5437.

Research output: Contribution to journalArticle

Saccharum
Genomics
Magnesium
Genes
Mya

Comparative resistomic analyses of Lysobacter species with high intrinsic multidrug resistance

Yu, M. & Zhao, Y., Dec 2019, In : Journal of Global Antimicrobial Resistance. 19, p. 320-327 8 p.

Research output: Contribution to journalArticle

Lysobacter
Multiple Drug Resistance
Microbial Drug Resistance
Xanthomonas campestris
Genes

Convergent evolution of saccate body shapes in nematodes through distinct developmental mechanisms

Thapa, S., Gates, M. K., Reuter-Carlson, U., Androwski, R. J. & Schroeder, N. E., Mar 14 2019, In : EvoDevo. 10, 1, 21 p., 5.

Research output: Contribution to journalArticle

Open Access
animal morphology
convergent evolution
Heterodera glycines
body shape
Glycine

Correction: Multiple modes of convergent adaptation in the spread of glyphosate-resistant Amaranthus tuberculatus (Proceedings of the National Academy of Sciences of the United States of America (2019) 116 (21076–21084) DOI: 10.1073/pnas.1900870116)

Kreiner, J. M., Giacomini, D. A., Bemm, F., Waithaka, B., Regalado, J., Lanz, C., Hildebrandt, J., Sikkema, P. H., Tranel, P. J., Weigel, D., Stinchcombe, J. R. & Wright, S. I., Nov 12 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 46, 1 p.

Research output: Contribution to journalComment/debate

Open Access
glyphosate
Amaranthus
Genome
Databases