Research Output 1965 2020

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Review article
2019

Integration of machine learning and pharmacogenomic biomarkers for predicting response to antidepressant treatment: Can computational intelligence be used to augment clinical assessments?

Athreya, A. P., Iyer, R. K., Wang, L., Weinshilboum, R. M. & Bobo, W. V., Jan 1 2019, In : Pharmacogenomics. 20, 14, p. 983-988 6 p.

Research output: Contribution to journalReview article

Open Access
Artificial Intelligence
Pharmacogenetics
Antidepressive Agents
Biomarkers
Machine Learning
2018

A survey of statistical model checking

Agha, G. A. & Palmskog, K., Jan 2018, In : ACM Transactions on Modeling and Computer Simulation. 28, 1, 6.

Research output: Contribution to journalReview article

Model checking
Model Checking
Statistical Model
Stochastic systems
Stochastic Systems

Big data and extreme-scale computing: Pathways to Convergence-Toward a shaping strategy for a future software and data ecosystem for scientific inquiry

Asch, M., Moore, T., Badia, R., Beck, M., Beckman, P., Bidot, T., Bodin, F., Cappello, F., Choudhary, A., de Supinski, B., Deelman, E., Dongarra, J., Dubey, A., Fox, G., Fu, H., Girona, S., Gropp, W. D., Heroux, M., Ishikawa, Y., Keahey, K. & 19 others, Keyes, D., Kramer, W. T., Lavignon, J. F., Lu, Y., Matsuoka, S., Mohr, B., Reed, D., Requena, S., Saltz, J., Schulthess, T., Stevens, R., Swany, M., Szalay, A., Tang, W., Varoquaux, G., Vilotte, J. P., Wisniewski, R., Xu, Z. & Zacharov, I., Jul 1 2018, In : International Journal of High Performance Computing Applications. 32, 4, p. 435-479 45 p.

Research output: Contribution to journalReview article

Ecosystem
Ecosystems
Pathway
Extremes
Software

Inferring Nighttime Ionospheric Parameters with the Far Ultraviolet Imager Onboard the Ionospheric Connection Explorer

Kamalabadi, F., Qin, J., Harding, B. J., Iliou, D., Makela, J. J., Meier, R. R., England, S. L., Frey, H. U., Mende, S. B. & Immel, T. J., Jun 1 2018, In : Space Science Reviews. 214, 4, 70.

Research output: Contribution to journalReview article

ionospherics
ionosphere
ionospheres
oxygen
F region

Reproducibility and replicability of rodent phenotyping in preclinical studies

Kafkafi, N., Agassi, J., Chesler, E. J., Crabbe, J. C., Crusio, W. E., Eilam, D., Gerlai, R., Golani, I., Gomez-Marin, A., Heller, R., Iraqi, F., Jaljuli, I., Karp, N. A., Morgan, H., Nicholson, G., Pfaff, D. W., Richter, S. H., Stark, P. B., Stiedl, O., Stodden, V. & 6 others, Tarantino, L. M., Tucci, V., Valdar, W., Williams, R. W., Würbel, H. & Benjamini, Y., Apr 2018, In : Neuroscience and Biobehavioral Reviews. 87, p. 218-232 15 p.

Research output: Contribution to journalReview article

Information Dissemination
Rodentia
Genotype
Research Personnel
Health

Technical perspective: Is your WiFi a sensor?

Roy Choudhury, R., Sep 2018, In : Communications of the ACM. 61, 9, 1 p.

Research output: Contribution to journalReview article

Sensors

The Ionospheric Connection Explorer Mission: Mission Goals and Design

Immel, T. J., England, S. L., Mende, S. B., Heelis, R. A., Englert, C. R., Edelstein, J., Frey, H. U., Korpela, E. J., Taylor, E. R., Craig, W. W., Harris, S. E., Bester, M., Bust, G. S., Crowley, G., Forbes, J. M., Gérard, J. C., Harlander, J. M., Huba, J. D., Hubert, B., Kamalabadi, F. & 13 others, Makela, J. J., Maute, A. I., Meier, R. R., Raftery, C., Rochus, P., Siegmund, O. H. W., Stephan, A. W., Swenson, G. R., Frey, S., Hysell, D. L., Saito, A., Rider, K. A. & Sirk, M. M., Feb 1 2018, In : Space Science Reviews. 214, 1, 13.

Research output: Contribution to journalReview article

aerospace environments
ionospherics
requirements
aerospace sciences
payloads
2017

Computational optical coherence tomography [invited]

Liu, Y. Z., South, F. A., Xu, Y., Scott Carney, P. & Boppart, S. A., Mar 1 2017, In : Biomedical Optics Express. 8, 3, p. 1549-1574 26 p.

Research output: Contribution to journalReview article

Optical Coherence Tomography
imaging techniques
tomography
Physics
aberration

Dynamic Thermal management for aerospace technology: Review and outlook

Doty, J., Yerkes, K., Byrd, L., Murthy, J., Alleyne, A. G., Wolff, M., Heister, S. & Fisher, T. S., Jan 1 2017, In : Journal of thermophysics and heat transfer. 31, 1, p. 86-98 13 p.

Research output: Contribution to journalReview article

electric power
aerospace vehicles
chemical energy
propulsion
thermal energy

Human-in-the-Loop Mobile Networks: A Survey of Recent Advancements

Duan, L., Huang, L., Langbort, C., Pozdnukhov, A., Walrand, J. & Zhang, L., Apr 2017, In : IEEE Journal on Selected Areas in Communications. 35, 4, p. 813-831 19 p., 7911263.

Research output: Contribution to journalReview article

Human engineering
Wireless networks
Information technology

Michelson Interferometer for Global High-Resolution Thermospheric Imaging (MIGHTI): Instrument Design and Calibration

Englert, C. R., Harlander, J. M., Brown, C. M., Marr, K. D., Miller, I. J., Stump, J. E., Hancock, J., Peterson, J. Q., Kumler, J., Morrow, W. H., Mooney, T. A., Ellis, S., Mende, S. B., Harris, S. E., Stevens, M. H., Makela, J. J., Harding, B. J. & Immel, T. J., Oct 1 2017, In : Space Science Reviews. 212, 1-2, p. 553-584 32 p.

Research output: Contribution to journalReview article

Michelson interferometers
interferometer
field of view
calibration
wavelength

Multiuniversity Research: The Power Systems Engineering Research Center [History]

Ray, D. J., Sauer, P. W., Thomas, R. J. & Giri, J., Mar 1 2017, In : IEEE Power and Energy Magazine. 15, 2, p. 74-89 16 p., 7866929.

Research output: Contribution to journalReview article

Engineering research
Systems engineering

The 2017 Plasma Roadmap: Low temperature plasma science and technology

Adamovich, I., Baalrud, S. D., Bogaerts, A., Bruggeman, P. J., Cappelli, M., Colombo, V., Czarnetzki, U., Ebert, U., Eden, J. G., Favia, P., Graves, D. B., Hamaguchi, S., Hieftje, G., Hori, M., Kaganovich, I. D., Kortshagen, U., Kushner, M. J., Mason, N. J., Mazouffre, S., Thagard, S. M. & 18 others, Metelmann, H. R., Mizuno, A., Moreau, E., Murphy, A. B., Niemira, B. A., Oehrlein, G. S., Petrovic, Z. L., Pitchford, L. C., Pu, Y. K., Rauf, S., Sakai, O., Samukawa, S., Starikovskaia, S., Tennyson, J., Terashima, K., Turner, M. M., Van De Sanden, M. C. M. & Vardelle, A., Jul 14 2017, In : Journal of Physics D: Applied Physics. 50, 32, 323001.

Research output: Contribution to journalReview article

cold plasmas
Plasmas
Temperature
physics
Physics

The MIGHTI Wind Retrieval Algorithm: Description and Verification

Harding, B. J., Makela, J. J., Englert, C. R., Marr, K. D., Harlander, J. M., England, S. L. & Immel, T. J., Oct 1 2017, In : Space Science Reviews. 212, 1-2, p. 585-600 16 p.

Research output: Contribution to journalReview article

Michelson interferometers
interferometer
retrieval
line of sight
high resolution
2016

A comprehensive empirical study of data privacy, trust, and consumer autonomy

Kesan, J. P., Hayes, C. M. & Bashir, M. N., Jan 1 2016, In : Indiana Law Journal. 91, 2, p. 267-352 86 p.

Research output: Contribution to journalReview article

privacy
autonomy
privacy law
private sector
data storage

A perspective on 16S rRNA operational taxonomic unit clustering using sequence similarity

Nguyen, N. P., Warnow, T., Pop, M. & White, B., Apr 20 2016, In : npj Biofilms and Microbiomes. 2, 16004.

Research output: Contribution to journalReview article

Cluster Analysis
Sequence Alignment
Microbiota

Enhancing reproducibility for computational methods

Stodden, V., McNutt, M., Bailey, D. H., Deelman, E., Gil, Y., Hanson, B., Heroux, M. A., Ioannidis, J. P. A. & Taufer, M., Dec 9 2016, In : Science. 354, 6317, p. 1240-1241 2 p.

Research output: Contribution to journalReview article

Image science at JOSA A: Editorial

Carney, P. S., Oct 2016, In : Journal of the Optical Society of America A: Optics and Image Science, and Vision. 33, 10, p. ED8

Research output: Contribution to journalReview article

Review of formation flying and constellation missions using nanosatellites

Chung, S-J., Bandyopadhyay, S., Foust, R., Subramanian, G. P. & Hadaegh, F. Y., Jan 1 2016, In : Journal of Spacecraft and Rockets. 53, 3, p. 567-578 12 p.

Research output: Contribution to journalReview article

Nanosatellites
nanosatellites
formation flying
constellations
NASA
envelopes
Ultrasonics
Statistics
statistics
Imaging techniques

Sampling sparse signals on the sphere: Algorithms and applications

Dokmanić, I. & Lu, Y. M., Jan 1 2016, In : IEEE Transactions on Signal Processing. 64, 1, p. 189-202 14 p., 7265080.

Research output: Contribution to journalReview article

Sampling
Innovation
Acoustic waves
Shot noise
Microphones
2015

Blood flow mechanics in cardiovascular development

Boselli, F., Freund, J. B. & Vermot, J., Jul 8 2015, In : Cellular and Molecular Life Sciences. 72, 13, p. 2545-2559 15 p.

Research output: Contribution to journalReview article

Mechanics
Hemodynamics
Gene Regulatory Networks
Morphogenesis
Embryonic Structures

Comments on "Observability of Switched Linear Systems: Characterization and Observer Design"

Tanwani, A., Shim, H. & Liberzon, D. M., Dec 2015, In : IEEE Transactions on Automatic Control. 60, 12, p. 3396-3400 5 p., 7084623.

Research output: Contribution to journalReview article

Observability
Linear systems
State estimation

Encoding and decoding with prior knowledge: From SLIM to SPICE

Ma, C., Lam, F. & Liang, Z-P., 2015, In : eMagRes. 4, 2, p. 535-542 8 p.

Research output: Contribution to journalReview article

SPICE
Computer-Assisted Image Processing
Decoding
Fourier Analysis
Magnetic Resonance Imaging

Mechanisms, Capabilities, and Applications of High-Resolution Electrohydrodynamic Jet Printing

Onses, M. S., Sutanto, E., Ferreira, P. M., Alleyne, A. G. & Rogers, J. A., Sep 1 2015, In : Small. 11, 34, p. 4237-4266 30 p.

Research output: Contribution to journalReview article

Printing
Electrohydrodynamics
Optics and Photonics
Ink
Tissue Engineering

Policy, procedures, and goals at JOSA A: Editorial

Gori, F. & Carney, P. S., 2015, In : Journal of the Optical Society of America A: Optics and Image Science, and Vision. 32, 8, p. ED1

Research output: Contribution to journalReview article

Photonics
Optics
Optics and Photonics
Manuscripts
Research Personnel

The geospace response to variable inputs from the lower atmosphere: a review of the progress made by Task Group 4 of CAWSES-II

Oberheide, J., Shiokawa, K., Gurubaran, S., Ward, W. E., Fujiwara, H., Kosch, M. J., Makela, J. J. & Takahashi, H., Dec 1 2015, In : Progress in Earth and Planetary Science. 2, 1, 2.

Research output: Contribution to journalReview article

ionosphere
atmosphere
magnetosphere
weather
energy
2014

All-to-all communication in random regular directed graphs

Kim, J., Ghayoori, A. & Srikant, R., Jan 1 2014, In : IEEE Transactions on Network Science and Engineering. 1, 1, p. 43-52 10 p., 6971166.

Research output: Contribution to journalReview article

Directed graphs
Peer to peer networks
Communication
Switches

Data access for the 1,000 Plants (1KP) project

Matasci, N., Hung, L. H., Yan, Z., Carpenter, E. J., Wickett, N. J., Mirarab, S., Nguyen, N., Warnow, T., Ayyampalayam, S., Barker, M., Burleigh, J. G., Gitzendanner, M. A., Wafula, E., Der, J. P., dePamphilis, C. W., Roure, B., Philippe, H., Ruhfel, B. R., Miles, N. W., Graham, S. W. & 24 others, Mathews, S., Surek, B., Melkonian, M., Soltis, D. E., Soltis, P. S., Rothfels, C., Pokorny, L., Shaw, J. A., DeGironimo, L., Stevenson, D. W., Villarreal, J. C., Chen, T., Kutchan, T. M., Rolf, M., Baucom, R. S., Deyholos, M. K., Samudrala, R., Tian, Z., Wu, X., Sun, X., Zhang, Y., Wang, J., Leebens-Mack, J. & Wong, G. K. S., Oct 27 2014, In : GigaScience. 3, 1, 17.

Research output: Contribution to journalReview article

Viridiplantae
Proteins
Transcriptome
Visualization
Pipelines

Designed-in security for cyber-physical systems

Peisert, S., Margulies, J., Nicol, D. M., Khurana, H. & Sawall, C., Sep 2014, In : IEEE Security and Privacy. 12, 5, p. 9-12 4 p., 6924670.

Research output: Contribution to journalReview article

system development
assets
expert
Cyber Physical System
software

Special issue: SC13-The international conference for high performance computing, networking, storage and analysis

Gropp, W. D. & Matsuoka, S., 2014, In : Scientific Programming. 22, 2, p. 57-58 2 p.

Research output: Contribution to journalReview article

The swarm at the edge of the cloud

Lee, E. A., Rabaey, J., Hartmann, B., Kubiatowicz, J., Pister, K., Simunic Rosing, T., Wawrzynek, J., Wessel, D., Sangiovanni-Vincentelli, A., Seshia, S. A., Blaauw, D., Dutta, P., Fu, K., Guestrin, C., Taskar, B., Jafari, R., Jones, D. L., Kumar, V., Mangharam, R., Pappas, G. J. & 2 others, Murray, R. M. & Rowe, A., Jun 2014, In : IEEE Design and Test. 31, 3, p. 8-20 13 p., 6781658.

Research output: Contribution to journalReview article

Smartphones
Information use
Telecommunication networks
Sensors

Visual media: History and perspectives

Huang, T. S., Le, V., Paine, T., Khorrami, P. & Tariq, U., 2014, In : IEEE Multimedia. 21, 2, p. 4-10 7 p., 6818960.

Research output: Contribution to journalReview article

Patents and inventions
Lenses
Imaging techniques
2013

Empathic design: Research strategies

Thomas, J. & McDonagh, D., Feb 7 2013, In : Australasian Medical Journal. 6, 1, p. 1-6 6 p.

Research output: Contribution to journalReview article

Research Design
Human Development
Disabled Persons
Health Personnel
Decision Making

Game theory meets network security and privacy

Manshaei, M. H., Zhu, Q., Alpcan, T., Basar, M. T. & Hubaux, J. P., Jun 2013, In : ACM Computing Surveys. 45, 3, 25.

Research output: Contribution to journalReview article

Network Security
Network security
Game theory
Game Theory
Privacy

Innovating alongside designers

McDonagh, D. C. & Thomas, J., Feb 7 2013, In : Australasian Medical Journal. 6, 1, p. 29-35 7 p.

Research output: Contribution to journalReview article

Research Design
Interdisciplinary Studies
Cultural Anthropology
Pollination
Language

Is SDN the de-constraining constraint of the future internet?

Crowcroft, J., Fidler, M., Nahrstedt, K. & Steinmetz, R., Oct 1 2013, In : Computer Communication Review. 43, 5, p. 13-18 6 p.

Research output: Contribution to journalReview article

Technical presentations
Internet
Software defined networking
Industry

Shared language: Towards more effective communication

Thomas, J. & McDonagh, D. C., Jan 1 2013, In : Australasian Medical Journal. 6, 1, p. 46-54 9 p.

Research output: Contribution to journalReview article

Language
Communication
Education
Aptitude
2012

Game-theoretic methods for the smart grid: An overview of microgrid systems, demand-side management, and smart grid communications

Saad, W., Han, Z., Poor, H. V. & Basar, M. T., Jan 1 2012, In : IEEE Signal Processing Magazine. 29, 5, p. 86-105 20 p., 6279592.

Research output: Contribution to journalReview article

Microgrid
Smart Grid
Game theory
Game Theory
Game

Introduction to special section on formal methods in pervasive computing

Bakhouya, M., Campbell, R. H., Coronato, A., De Pietro, G. & Ranganathan, A., Apr 2012, In : ACM Transactions on Autonomous and Adaptive Systems. 7, 1, 6.

Research output: Contribution to journalReview article

Formal methods
Ubiquitous computing
Availability

Large-scale measurements of thermospheric dynamics with a multisite fabry-perot interferometer network: Overview of plans and results from midlatitude measurements

Makela, J. J., Meriwether, J. W., Ridley, A. J., Ciocca, M. & Castellez, M. W., Sep 19 2012, In : International Journal of Geophysics. 2012, 872140.

Research output: Contribution to journalReview article

temperate regions
Fabry-Perot interferometers
interferometer
thermosphere
ionosphere

Time-critical cooperative control of multiple autonomous vehicles: Robust distributed strategies for path-following control and time-coordination over dynamic communications networks

Xargay, E., Dobrokhodov, V., Kaminer, I., Pascoal, A. M., Hovakimyan, N. & Cao, C., Dec 1 2012, In : IEEE Control Systems. 32, 5, p. 49-73 25 p.

Research output: Contribution to journalReview article

Cooperative Control
Path Following
Autonomous Vehicles
Dynamic Networks
Communication Networks
2011

Convective ionospheric storms: A review

Kelley, M. C., Makela, J. J., De La Beaujardiére, O. & Retterer, J., Jun 1 2011, In : Reviews of Geophysics. 49, 2, RG2003.

Research output: Contribution to journalReview article

ionospheric storms
navigation
communication
forecasting
spread F

Distributed scalar quantization for computing: High-resolution analysis and extensions

Misra, V., Goyal, V. K. & Varshney, L. R., Aug 1 2011, In : IEEE Transactions on Information Theory. 57, 8, p. 5298-5325 28 p., 5961835.

Research output: Contribution to journalReview article

entropy
Entropy
communication
Communication
Accidental
Syndrome
Empathy
Sleep
Risk Factors

Engineering of exchange interactions in electrostatic quantum dots for information processing

Melnikov, D. V. & Leburton, J-P., Mar 2011, In : Journal of Computational and Theoretical Nanoscience. 8, 3, p. 449-463 15 p.

Research output: Contribution to journalReview article

Exchange Interaction
Exchange interactions
Quantum Dots
Information Processing
Electrostatics

Network formation games among relay stations in next generation wireless networks

Saad, W., Han, Z., Basar, T., Debbah, M. & Hjørungnes, A., Sep 1 2011, In : IEEE Transactions on Communications. 59, 9, p. 2528-2542 15 p., 5936797.

Research output: Contribution to journalReview article

Wireless networks
Parallel algorithms
Long Term Evolution (LTE)
Game theory
Base stations
2010

Progress review of electromagnetic compatibility analysis technologies for packages, printed circuit boards, and novel interconnects

Li, E. P., Wei, X. C., Cangellaris, A. C., Liu, E. X., Zhang, Y. J., D'amore, M., Kim, J. & Sudo, T., May 1 2010, In : IEEE Transactions on Electromagnetic Compatibility. 52, 2, p. 248-265 18 p., 5464324.

Research output: Contribution to journalReview article

electromagnetic compatibility
Electromagnetic compatibility
printed circuits
circuit boards
Printed circuit boards

Recovery of rectified signals from hot-wire/film anemometers due to flow reversal in oscillating flows

Yang, Y., Jones, D. L. & Liu, C., Feb 8 2010, In : Review of Scientific Instruments. 81, 1, 015104.

Research output: Contribution to journalReview article

oscillating flow
Oscillating flow
anemometers
Anemometers
recovery
2009

The parallelization of video processing: From programming models to applications

Lin, D., Huang, X., Nguyen, Q., Blackburn, J., Rodrigues, C., Huang, T. S., Do, M. N., Patel, S. J. & Hwu, W-M. W., Jan 1 2009, In : IEEE Signal Processing Magazine. 26, 6, p. 103-112 10 p.

Research output: Contribution to journalReview article

Video Processing
Parallelization
Programming Model
Digital Video
Processing